Wall clock time and date at job start Sun Mar 29 2020 23:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 N 1.28958 * 124.82786 * 2 1 4 4 C 1.31804 * 117.21608 * 179.71271 * 3 2 1 5 5 C 1.34607 * 114.25895 * 0.48177 * 4 3 2 6 6 N 1.39294 * 126.08286 * 179.82491 * 5 4 3 7 7 C 1.38491 * 120.00498 * 219.55699 * 6 5 4 8 8 C 1.38904 * 120.30228 * 6.22498 * 7 6 5 9 9 C 1.38048 * 120.01259 * 180.30064 * 8 7 6 10 10 C 1.38964 * 120.64799 * 359.71314 * 9 8 7 11 11 C 1.36404 * 120.61860 * 359.97438 * 10 9 8 12 12 C 1.40750 * 119.95548 * 0.02562 * 11 10 9 13 13 C 1.40986 * 120.31604 * 180.02562 * 12 11 10 14 14 H 1.07996 * 120.00240 * 208.51250 * 13 12 11 15 15 C 1.39840 * 119.99984 * 28.50383 * 13 12 11 16 16 N 1.30923 * 120.00077 * 189.72381 * 15 13 12 17 17 Si 1.86806 * 120.00095 * 9.72663 * 15 13 12 18 18 H 1.48501 * 109.46978 * 269.99998 * 17 15 13 19 19 H 1.48506 * 109.46950 * 29.99402 * 17 15 13 20 20 H 1.48495 * 109.47423 * 149.99586 * 17 15 13 21 21 S 1.70959 * 124.82378 * 179.97438 * 2 1 3 22 22 H 1.09005 * 109.47648 * 270.02593 * 1 2 3 23 23 H 1.08999 * 109.47342 * 30.02465 * 1 2 3 24 24 H 1.09001 * 109.47854 * 150.02441 * 1 2 3 25 25 H 1.07994 * 122.87049 * 180.32136 * 4 3 2 26 26 H 0.97004 * 119.99585 * 39.55346 * 6 5 4 27 27 H 1.07995 * 119.99193 * 0.02562 * 8 7 6 28 28 H 1.08005 * 119.67717 * 179.69750 * 9 8 7 29 29 H 1.07994 * 119.69584 * 179.97438 * 10 9 8 30 30 H 1.07995 * 120.02250 * 179.97438 * 11 10 9 31 31 H 0.96992 * 120.00034 * 355.04084 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2434 1.0586 0.0000 4 6 3.5498 0.8840 0.0059 5 6 3.9355 -0.4056 0.0008 6 7 5.2490 -0.8691 0.0017 7 6 5.5962 -1.9680 -0.7663 8 6 4.6741 -2.5337 -1.6375 9 6 5.0246 -3.6328 -2.3957 10 6 6.2982 -4.1807 -2.3025 11 6 7.2262 -3.6422 -1.4602 12 6 6.8964 -2.5214 -0.6753 13 6 7.8499 -1.9583 0.1974 14 1 7.5273 -1.4466 1.0921 15 6 9.2133 -2.0626 -0.0953 16 7 10.1035 -1.7127 0.7987 17 14 9.7646 -2.7011 -1.7620 18 1 9.9188 -4.1768 -1.7004 19 1 8.7481 -2.3521 -2.7868 20 1 11.0650 -2.0822 -2.1239 21 16 2.4832 -1.4034 0.0006 22 1 -0.3634 0.0005 1.0277 23 1 -0.3634 0.8897 -0.5142 24 1 -0.3635 -0.8902 -0.5134 25 1 4.2509 1.7054 0.0115 26 1 5.9206 -0.4221 0.5403 27 1 3.6813 -2.1164 -1.7184 28 1 4.3017 -4.0714 -3.0677 29 1 6.5558 -5.0409 -2.9024 30 1 8.2131 -4.0760 -1.3951 31 1 9.8191 -1.3141 1.6360 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212140191.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:49:38 Heat of formation + Delta-G solvation = 44.729056 kcal Electronic energy + Delta-G solvation = -16438.868717 eV Core-core repulsion = 13810.677508 eV Total energy + Delta-G solvation = -2628.191208 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 260.068 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.86365 -40.01419 -36.73023 -35.66050 -32.66724 -32.16227 -30.42064 -27.81236 -26.50104 -24.93465 -23.50708 -22.18633 -20.75586 -20.07463 -19.26051 -18.01274 -17.69710 -16.56573 -16.13650 -15.91603 -15.43752 -15.27715 -14.76711 -14.49077 -14.38397 -14.04745 -13.87705 -13.37089 -13.14388 -12.84570 -12.67916 -12.36174 -12.23193 -11.73922 -11.43689 -11.36522 -10.94149 -10.59200 -10.02359 -9.75283 -9.62981 -9.25015 -8.33930 -6.45840 -0.27733 0.16115 0.69340 0.86007 0.99609 1.36958 1.55468 1.75615 1.85406 2.18338 2.45955 2.67230 3.38969 3.45890 4.13525 4.19787 4.35339 4.41177 4.55803 4.69975 4.74000 4.75340 4.95508 4.99409 5.17596 5.30414 5.40401 5.47753 5.64060 5.94508 5.98328 6.15012 6.37633 6.53323 6.69191 6.77468 6.86596 8.04658 Molecular weight = 260.07amu Principal moments of inertia in cm(-1) A = 0.031750 B = 0.006181 C = 0.005415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.678227 B = 4528.599158 C = 5169.733093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.009 3.991 3 N -0.472 5.472 4 C -0.042 4.042 5 C 0.034 3.966 6 N -0.628 5.628 7 C 0.064 3.936 8 C -0.154 4.154 9 C -0.183 4.183 10 C -0.111 4.111 11 C -0.226 4.226 12 C 0.043 3.957 13 C -0.538 4.538 14 H 0.051 0.949 15 C 0.007 3.993 16 N -0.856 5.856 17 Si 1.109 2.891 18 H -0.259 1.259 19 H -0.257 1.257 20 H -0.292 1.292 21 S 0.120 5.880 22 H 0.097 0.903 23 H 0.092 0.908 24 H 0.099 0.901 25 H 0.176 0.824 26 H 0.411 0.589 27 H 0.123 0.877 28 H 0.137 0.863 29 H 0.133 0.867 30 H 0.106 0.894 31 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.338 -0.755 -3.927 14.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.269 4.269 3 N -0.187 5.187 4 C -0.196 4.196 5 C -0.187 4.187 6 N -0.252 5.252 7 C -0.034 4.034 8 C -0.177 4.177 9 C -0.203 4.203 10 C -0.130 4.130 11 C -0.246 4.246 12 C 0.038 3.962 13 C -0.569 4.569 14 H 0.070 0.930 15 C -0.204 4.204 16 N -0.481 5.481 17 Si 0.932 3.068 18 H -0.186 1.186 19 H -0.182 1.182 20 H -0.220 1.220 21 S 0.371 5.629 22 H 0.115 0.885 23 H 0.111 0.889 24 H 0.117 0.883 25 H 0.193 0.807 26 H 0.250 0.750 27 H 0.141 0.859 28 H 0.155 0.845 29 H 0.151 0.849 30 H 0.124 0.876 31 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -13.504 -1.668 -4.727 14.404 hybrid contribution 0.193 1.674 1.953 2.580 sum -13.311 0.006 -2.774 13.596 Atomic orbital electron populations 1.20542 0.82434 1.05171 1.04834 1.27460 1.03029 0.90477 1.05984 1.66198 1.04110 1.32370 1.16007 1.21854 0.91967 0.94751 1.11061 1.23740 0.90422 0.95686 1.08881 1.40822 1.04969 1.31473 1.47955 1.18058 0.96049 0.91417 0.97855 1.20913 0.98693 0.99305 0.98815 1.20719 0.97152 0.98726 1.03663 1.20712 0.93571 1.00152 0.98547 1.20818 1.00441 0.98845 1.04491 1.17571 0.91560 0.92619 0.94451 1.20278 0.93425 1.35422 1.07727 0.93049 1.28171 0.92800 0.93120 1.06346 1.70652 1.38234 1.31561 1.07636 0.83150 0.75282 0.77010 0.71339 1.18561 1.18195 1.22006 1.84126 0.96979 1.11378 1.70389 0.88455 0.88940 0.88273 0.80668 0.75036 0.85943 0.84547 0.84908 0.87625 0.91429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.17 10.46 71.23 0.75 -0.42 16 2 C 0.01 0.25 7.37 88.53 0.65 0.90 16 3 N -0.47 -15.13 10.54 -190.80 -2.01 -17.14 16 4 C -0.04 -1.43 11.40 83.86 0.96 -0.47 16 5 C 0.03 1.23 6.52 82.67 0.54 1.77 16 6 N -0.63 -25.85 5.47 -181.85 -0.99 -26.84 16 7 C 0.06 2.85 6.63 39.08 0.26 3.11 16 8 C -0.15 -6.12 8.69 22.38 0.19 -5.92 16 9 C -0.18 -6.68 10.03 22.40 0.22 -6.46 16 10 C -0.11 -4.24 9.96 22.02 0.22 -4.02 16 11 C -0.23 -10.18 6.87 22.46 0.15 -10.03 16 12 C 0.04 2.10 5.25 -21.16 -0.11 1.99 16 13 C -0.54 -28.44 8.84 23.33 0.21 -28.23 16 14 H 0.05 2.83 7.04 -2.91 -0.02 2.81 16 15 C 0.01 0.39 5.49 85.22 0.47 0.86 16 16 N -0.86 -46.93 13.66 21.81 0.30 -46.63 16 17 Si 1.11 48.33 24.69 68.60 1.69 50.02 16 18 H -0.26 -10.37 6.60 99.48 0.66 -9.71 16 19 H -0.26 -11.01 6.53 99.48 0.65 -10.36 16 20 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 21 S 0.12 3.59 19.93 -56.49 -1.13 2.46 16 22 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 23 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.18 5.51 8.06 -2.91 -0.02 5.49 16 26 H 0.41 17.25 7.16 -92.71 -0.66 16.59 16 27 H 0.12 4.41 4.90 -12.06 -0.06 4.35 16 28 H 0.14 3.96 8.06 -2.91 -0.02 3.94 16 29 H 0.13 4.12 8.06 -2.91 -0.02 4.09 16 30 H 0.11 4.69 3.77 -2.91 -0.01 4.68 16 31 H 0.28 14.95 8.73 -92.71 -0.81 14.14 16 Total: -1.00 -59.55 272.25 2.69 -56.85 By element: Atomic # 1 Polarization: 27.86 SS G_CDS: 0.32 Total: 28.18 kcal Atomic # 6 Polarization: -51.42 SS G_CDS: 4.51 Total: -46.91 kcal Atomic # 7 Polarization: -87.90 SS G_CDS: -2.71 Total: -90.61 kcal Atomic # 14 Polarization: 48.33 SS G_CDS: 1.69 Total: 50.02 kcal Atomic # 16 Polarization: 3.59 SS G_CDS: -1.13 Total: 2.46 kcal Total: -59.55 2.69 -56.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212140191.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.583 kcal (2) G-P(sol) polarization free energy of solvation -59.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds