Wall clock time and date at job start Mon Mar 30 2020 00:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.40066 * 120.56441 * 214.16484 * 3 2 1 5 5 C 1.38344 * 118.28219 * 179.74795 * 4 3 2 6 6 C 1.38356 * 119.31253 * 0.25653 * 5 4 3 7 7 C 1.50701 * 119.44999 * 180.02562 * 6 5 4 8 8 N 1.46502 * 109.47192 * 95.00360 * 7 6 5 9 9 C 1.34783 * 120.00030 * 180.02562 * 8 7 6 10 10 O 1.21587 * 119.99861 * 359.97438 * 9 8 7 11 11 N 1.34769 * 119.99883 * 179.97438 * 9 8 7 12 12 C 1.46500 * 120.00068 * 179.97438 * 11 9 8 13 13 C 1.50697 * 109.47391 * 179.97438 * 12 11 9 14 14 H 1.08000 * 119.99817 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99915 * 180.02562 * 13 12 11 16 16 N 1.31509 * 119.99938 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99589 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47070 * 60.00057 * 17 15 13 19 19 H 1.48501 * 109.46887 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47224 * 299.99600 * 17 15 13 21 21 N 1.31913 * 121.09763 * 359.97438 * 6 5 4 22 22 C 1.31705 * 121.88087 * 0.02562 * 21 6 5 23 23 H 1.08002 * 120.86083 * 0.03012 * 4 3 2 24 24 H 1.08002 * 120.34490 * 180.23119 * 5 4 3 25 25 H 1.09003 * 109.46805 * 214.99954 * 7 6 5 26 26 H 1.08994 * 109.47498 * 334.99607 * 7 6 5 27 27 H 0.97003 * 119.99973 * 359.97438 * 8 7 6 28 28 H 0.97003 * 120.00120 * 359.97438 * 11 9 8 29 29 H 1.08996 * 109.47097 * 300.00103 * 12 11 9 30 30 H 1.09001 * 109.47209 * 59.99695 * 12 11 9 31 31 H 0.96999 * 119.99657 * 180.02562 * 16 15 13 32 32 H 1.08000 * 119.71595 * 180.02562 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2798 0.9989 0.6773 5 6 4.6621 0.9509 0.6508 6 6 5.2914 -0.0684 -0.0415 7 6 6.7971 -0.1240 -0.0719 8 7 7.2743 -1.0169 0.9869 9 6 8.5964 -1.2213 1.1511 10 8 9.3929 -0.6651 0.4200 11 7 9.0354 -2.0423 2.1255 12 6 10.4724 -2.2650 2.3036 13 6 10.6949 -3.2156 3.4516 14 1 9.8505 -3.6137 3.9945 15 6 11.9767 -3.5763 3.8094 16 7 13.0050 -3.0911 3.1485 17 14 12.2526 -4.7540 5.2328 18 1 11.5840 -6.0476 4.9416 19 1 13.7092 -4.9798 5.4132 20 1 11.6840 -4.1714 6.4747 21 7 4.5953 -0.9930 -0.6746 22 6 3.2782 -0.9908 -0.6790 23 1 2.7629 1.7832 1.2103 24 1 5.2441 1.7016 1.1648 25 1 7.1272 -0.4999 -1.0404 26 1 7.2009 0.8759 0.0865 27 1 6.6388 -1.4604 1.5704 28 1 8.3999 -2.4858 2.7090 29 1 10.8896 -2.6920 1.3917 30 1 10.9633 -1.3158 2.5180 31 1 13.9067 -3.3451 3.4001 32 1 2.7434 -1.7653 -1.2086 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787358607.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:12:39 Heat of formation + Delta-G solvation = 32.601743 kcal Electronic energy + Delta-G solvation = -17384.597019 eV Core-core repulsion = 14345.419811 eV Total energy + Delta-G solvation = -3039.177208 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.101 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.93036 -39.13501 -37.14331 -34.98893 -34.03332 -33.14405 -32.42727 -31.76397 -27.98048 -26.44217 -24.35053 -23.26826 -22.24519 -20.24346 -19.59184 -18.29568 -17.28483 -16.79237 -15.84215 -15.64655 -14.97043 -14.90014 -14.79634 -14.54809 -13.89537 -13.78129 -13.56910 -13.41524 -13.07259 -12.99635 -12.87255 -12.20437 -11.94049 -11.70904 -10.97180 -10.86520 -10.46138 -10.29974 -10.04901 -9.74063 -9.38408 -9.34598 -8.84952 -8.69003 -7.77388 -6.14538 -4.21109 -0.00760 0.68015 2.13999 2.41220 3.16261 3.26327 3.26543 3.31548 3.33015 3.57447 3.80265 3.92798 4.15607 4.18953 4.34025 4.53096 4.74565 5.10424 5.15440 5.21535 5.27271 5.40417 5.62840 5.72580 5.99011 6.71521 6.93765 7.08066 7.39018 7.50186 7.54175 7.57804 7.89078 8.03817 8.76193 8.92103 9.31093 9.47647 10.95641 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.037760 B = 0.003072 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.353204 B = 9112.140618 C = 9555.144007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C 0.258 3.742 3 C -0.083 4.083 4 C -0.026 4.026 5 C -0.152 4.152 6 C 0.145 3.855 7 C 0.188 3.812 8 N -0.752 5.752 9 C 0.696 3.304 10 O -0.599 6.599 11 N -0.728 5.728 12 C 0.267 3.733 13 C -0.543 4.543 14 H 0.062 0.938 15 C 0.064 3.936 16 N -0.885 5.885 17 Si 0.904 3.096 18 H -0.276 1.276 19 H -0.285 1.285 20 H -0.276 1.276 21 N -0.464 5.464 22 C 0.156 3.844 23 H 0.148 0.852 24 H 0.152 0.848 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.393 0.607 28 H 0.387 0.613 29 H 0.025 0.975 30 H 0.025 0.975 31 H 0.266 0.734 32 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.171 7.258 -4.377 20.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.083 5.083 2 C -0.059 4.059 3 C -0.088 4.088 4 C -0.054 4.054 5 C -0.173 4.173 6 C 0.007 3.993 7 C 0.063 3.937 8 N -0.410 5.410 9 C 0.395 3.605 10 O -0.478 6.478 11 N -0.379 5.379 12 C 0.146 3.854 13 C -0.581 4.581 14 H 0.080 0.920 15 C -0.140 4.140 16 N -0.523 5.523 17 Si 0.731 3.269 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.201 1.201 21 N -0.172 5.172 22 C -0.006 4.006 23 H 0.165 0.835 24 H 0.170 0.830 25 H 0.104 0.896 26 H 0.103 0.897 27 H 0.226 0.774 28 H 0.219 0.781 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.076 0.924 32 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -19.431 7.106 -5.509 21.411 hybrid contribution -0.490 -0.390 1.746 1.855 sum -19.921 6.716 -3.763 21.357 Atomic orbital electron populations 1.81301 1.11854 1.07293 1.07899 1.25387 0.92263 0.94160 0.94050 1.17069 0.85621 1.00597 1.05548 1.21689 0.94003 0.95806 0.93896 1.22075 0.94445 1.00475 1.00260 1.21688 0.96975 0.89714 0.90911 1.19909 0.84991 0.95696 0.93141 1.44999 1.06352 1.52330 1.37324 1.16073 0.81380 0.80810 0.82192 1.90886 1.53992 1.54379 1.48497 1.45712 1.11295 1.47535 1.33404 1.18991 0.73078 0.96598 0.96727 1.21188 0.92738 1.28240 1.15949 0.92007 1.24938 0.95725 0.96364 0.96972 1.69964 0.98775 1.43426 1.40101 0.86475 0.77217 0.81055 0.82137 1.20098 1.21090 1.20114 1.67698 1.07305 1.24453 1.17711 1.23028 0.89496 0.94976 0.93053 0.83474 0.82991 0.89563 0.89676 0.77449 0.78121 0.95656 0.95670 0.92400 0.81438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -4.25 18.54 41.84 0.78 -3.47 16 2 C 0.26 2.04 15.37 -22.47 -0.35 1.69 16 3 C -0.08 -0.53 5.74 -106.78 -0.61 -1.14 16 4 C -0.03 -0.14 9.91 -38.86 -0.39 -0.52 16 5 C -0.15 -0.93 9.70 -39.50 -0.38 -1.31 16 6 C 0.15 1.26 6.15 -82.51 -0.51 0.75 16 7 C 0.19 2.14 5.97 -5.19 -0.03 2.10 16 8 N -0.75 -10.34 5.55 -66.41 -0.37 -10.71 16 9 C 0.70 13.69 8.57 -86.92 -0.74 12.95 16 10 O -0.60 -14.35 16.34 5.29 0.09 -14.27 16 11 N -0.73 -15.11 5.55 -66.42 -0.37 -15.48 16 12 C 0.27 7.03 5.43 -5.19 -0.03 7.00 16 13 C -0.54 -14.59 9.28 -34.44 -0.32 -14.91 16 14 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 15 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 16 N -0.89 -25.91 13.29 55.43 0.74 -25.17 16 17 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 18 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 19 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 20 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 21 N -0.46 -4.30 10.25 -9.12 -0.09 -4.39 16 22 C 0.16 1.09 10.92 -17.10 -0.19 0.90 16 23 H 0.15 0.43 8.06 -52.49 -0.42 0.01 16 24 H 0.15 0.67 8.06 -52.49 -0.42 0.25 16 25 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.09 0.91 8.04 -51.93 -0.42 0.49 16 27 H 0.39 4.45 8.48 -40.82 -0.35 4.10 16 28 H 0.39 6.84 8.34 -40.82 -0.34 6.50 16 29 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 32 H 0.17 0.81 8.06 -52.49 -0.42 0.39 16 LS Contribution 302.24 15.07 4.55 4.55 Total: -1.00 -34.05 302.24 -6.51 -40.57 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -3.17 Total: 3.53 kcal Atomic # 6 Polarization: 12.82 SS G_CDS: -3.64 Total: 9.18 kcal Atomic # 7 Polarization: -59.91 SS G_CDS: 0.68 Total: -59.23 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: 0.09 Total: -14.27 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -34.05 -6.51 -40.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787358607.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.170 kcal (2) G-P(sol) polarization free energy of solvation -34.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds