Wall clock time and date at job start Mon Mar 30 2020 00:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46493 * 120.00070 * 2 1 4 4 C 1.50703 * 109.47085 * 269.99571 * 3 2 1 5 5 H 1.08004 * 119.99864 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00102 * 179.97438 * 4 3 2 7 7 N 1.31507 * 120.00231 * 0.02562 * 6 4 3 8 8 Si 1.86807 * 119.99828 * 180.02562 * 6 4 3 9 9 H 1.48495 * 109.46907 * 60.00514 * 8 6 4 10 10 H 1.48497 * 109.46888 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47060 * 300.00604 * 8 6 4 12 12 C 1.34773 * 119.99774 * 179.97438 * 2 1 3 13 13 O 1.21560 * 119.99930 * 183.07487 * 12 2 1 14 14 C 1.47807 * 120.00173 * 3.08287 * 12 2 1 15 15 N 1.32290 * 120.58761 * 353.84288 * 14 12 2 16 16 C 1.32689 * 121.19018 * 180.02562 * 15 14 12 17 17 C 1.35486 * 122.10778 * 0.02562 * 16 15 14 18 18 N 1.36212 * 120.52532 * 359.96418 * 17 16 15 19 19 C 1.36167 * 133.92527 * 180.38186 * 18 17 16 20 20 C 1.35346 * 107.14323 * 180.10224 * 19 18 17 21 21 N 1.33568 * 108.61167 * 359.57711 * 20 19 18 22 22 C 1.31859 * 109.13768 * 0.26746 * 21 20 19 23 23 H 1.09004 * 109.47028 * 263.90426 * 1 2 3 24 24 H 1.09001 * 109.47022 * 23.90385 * 1 2 3 25 25 H 1.09001 * 109.47333 * 143.90184 * 1 2 3 26 26 H 1.08998 * 109.47745 * 30.00023 * 3 2 1 27 27 H 1.08998 * 109.47324 * 149.99977 * 3 2 1 28 28 H 0.96999 * 120.00194 * 179.97438 * 7 6 4 29 29 H 1.07999 * 118.94690 * 179.97438 * 16 15 14 30 30 H 1.08007 * 119.73239 * 179.97438 * 17 16 15 31 31 H 1.08000 * 126.43430 * 359.93946 * 19 18 17 32 32 H 1.07998 * 125.69479 * 179.84286 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7036 -1.4208 5 1 2.0975 1.0960 -2.2417 6 6 3.1261 2.8778 -1.6728 7 7 3.5533 3.6180 -0.6733 8 14 3.4369 3.4173 -3.4341 9 1 2.1391 3.5946 -4.1337 10 1 4.1795 4.7033 -3.4341 11 1 4.2395 2.3826 -4.1344 12 6 2.1388 -1.1672 0.0005 13 8 3.3531 -1.1680 0.0570 14 6 1.4014 -2.4463 -0.0677 15 7 0.0800 -2.4656 -0.0076 16 6 -0.5941 -3.6070 -0.0672 17 6 0.0273 -4.8046 -0.1914 18 7 1.3858 -4.8753 -0.2606 19 6 2.2729 -5.9002 -0.3901 20 6 3.5123 -5.3563 -0.3986 21 7 3.3967 -4.0303 -0.2872 22 6 2.1196 -3.7133 -0.2020 23 1 -0.3633 -0.1091 1.0219 24 1 -0.3633 0.9395 -0.4164 25 1 -0.3634 -0.8304 -0.6055 26 1 1.6085 2.0284 0.5138 27 1 3.1499 1.1384 0.5138 28 1 4.0302 4.4439 -0.8506 29 1 -1.6724 -3.5806 -0.0143 30 1 -0.5594 -5.7103 -0.2359 31 1 2.0329 -6.9502 -0.4684 32 1 4.4397 -5.9028 -0.4858 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265926531.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:05:07 Heat of formation + Delta-G solvation = 99.919522 kcal Electronic energy + Delta-G solvation = -18935.045593 eV Core-core repulsion = 15898.787503 eV Total energy + Delta-G solvation = -3036.258090 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.101 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.01723 -39.26757 -37.99969 -34.78260 -34.28413 -32.49552 -30.60841 -29.62661 -27.74039 -26.17461 -24.89980 -23.30571 -22.92269 -21.80382 -19.51220 -18.57902 -17.33606 -16.50345 -16.20020 -15.83196 -15.56655 -15.35526 -14.63791 -14.41840 -14.07865 -13.86040 -13.50278 -12.86145 -12.60128 -12.28858 -12.02175 -11.91825 -11.44947 -11.15541 -10.89078 -10.53050 -10.15541 -10.08879 -9.77016 -9.52408 -9.03941 -8.97540 -8.37878 -8.27211 -7.56062 -5.99035 -4.03884 0.10077 1.12688 2.24879 2.74899 3.08556 3.36990 3.41037 3.43205 3.49075 3.97053 3.99784 4.11429 4.27913 4.48277 4.55808 4.97491 5.07844 5.20252 5.25632 5.35345 5.62095 5.94594 6.12293 6.26558 6.42648 6.62430 6.67527 7.08819 7.41657 7.47579 7.58690 7.81338 7.97220 8.26760 8.38993 8.90359 9.06328 9.60662 11.08980 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.028450 B = 0.005519 C = 0.005080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.944431 B = 5072.454681 C = 5510.805692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.573 5.573 3 C 0.244 3.756 4 C -0.528 4.528 5 H 0.057 0.943 6 C 0.063 3.937 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.551 3.449 13 O -0.500 6.500 14 C 0.202 3.798 15 N -0.428 5.428 16 C 0.028 3.972 17 C 0.015 3.985 18 N -0.357 5.357 19 C -0.087 4.087 20 C 0.029 3.971 21 N -0.429 5.429 22 C 0.191 3.809 23 H 0.045 0.955 24 H 0.064 0.936 25 H 0.094 0.906 26 H 0.038 0.962 27 H 0.048 0.952 28 H 0.264 0.736 29 H 0.182 0.818 30 H 0.171 0.829 31 H 0.188 0.812 32 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.358 -18.824 1.550 21.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.304 5.304 3 C 0.125 3.875 4 C -0.566 4.566 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.201 1.201 12 C 0.334 3.666 13 O -0.373 6.373 14 C 0.037 3.963 15 N -0.144 5.144 16 C -0.112 4.112 17 C -0.110 4.110 18 N -0.031 5.031 19 C -0.221 4.221 20 C -0.124 4.124 21 N -0.148 5.148 22 C -0.056 4.056 23 H 0.063 0.937 24 H 0.083 0.917 25 H 0.112 0.888 26 H 0.056 0.944 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.199 0.801 30 H 0.188 0.812 31 H 0.205 0.795 32 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -9.584 -17.430 1.731 19.967 hybrid contribution -0.287 -1.268 -1.120 1.716 sum -9.870 -18.699 0.611 21.153 Atomic orbital electron populations 1.22232 0.80061 1.03226 1.01267 1.48081 1.07282 1.06747 1.68331 1.19434 0.92798 0.77514 0.97756 1.21385 1.36743 1.06394 0.92111 0.92428 1.24914 0.95272 0.96314 0.97453 1.69919 1.38259 1.14351 1.30777 0.86548 0.78349 0.77812 0.84671 1.20255 1.21146 1.20143 1.17241 0.86785 0.81872 0.80732 1.90874 1.12010 1.85588 1.48817 1.22959 0.88162 0.91441 0.93783 1.68851 1.06200 1.27510 1.11861 1.22294 1.01630 0.86144 1.01104 1.22628 0.81745 1.02115 1.04479 1.42900 1.06416 1.09321 1.44491 1.22723 0.89121 0.93611 1.16659 1.22917 0.97292 0.90275 1.01946 1.70732 1.13685 1.13238 1.17161 1.22623 0.87770 0.87354 1.07890 0.93659 0.91677 0.88837 0.94410 0.93411 0.92635 0.80127 0.81202 0.79505 0.79614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.35 9.41 59.85 0.56 1.91 16 2 N -0.57 -13.16 2.86 -184.10 -0.53 -13.68 16 3 C 0.24 6.60 5.16 -5.20 -0.03 6.57 16 4 C -0.53 -15.37 9.39 -34.44 -0.32 -15.69 16 5 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 6 C 0.06 1.82 5.46 -17.82 -0.10 1.73 16 7 N -0.89 -26.96 13.29 55.43 0.74 -26.22 16 8 Si 0.90 22.30 29.54 -169.99 -5.02 17.28 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 12 C 0.55 12.88 7.66 -12.35 -0.09 12.79 16 13 O -0.50 -13.66 15.81 5.31 0.08 -13.58 16 14 C 0.20 3.80 6.84 -80.54 -0.55 3.25 16 15 N -0.43 -6.37 6.16 -8.68 -0.05 -6.42 16 16 C 0.03 0.28 11.01 -18.16 -0.20 0.08 16 17 C 0.02 0.14 11.00 -16.59 -0.18 -0.04 16 18 N -0.36 -4.65 2.95 -61.12 -0.18 -4.83 16 19 C -0.09 -0.93 11.80 -16.66 -0.20 -1.13 16 20 C 0.03 0.38 11.84 -17.83 -0.21 0.17 16 21 N -0.43 -8.13 10.76 -11.28 -0.12 -8.26 16 22 C 0.19 3.43 7.66 -153.99 -1.18 2.25 16 23 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 24 H 0.06 1.16 8.03 -51.93 -0.42 0.74 16 25 H 0.09 1.53 5.17 -52.42 -0.27 1.26 16 26 H 0.04 1.02 8.07 -51.93 -0.42 0.60 16 27 H 0.05 1.44 7.38 -51.93 -0.38 1.06 16 28 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 29 H 0.18 1.05 8.06 -52.49 -0.42 0.63 16 30 H 0.17 0.78 8.06 -52.48 -0.42 0.36 16 31 H 0.19 1.10 8.06 -52.49 -0.42 0.67 16 32 H 0.19 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 285.04 15.07 4.30 4.30 Total: -1.00 -37.02 285.04 -6.44 -43.46 By element: Atomic # 1 Polarization: -0.78 SS G_CDS: -3.15 Total: -3.93 kcal Atomic # 6 Polarization: 14.38 SS G_CDS: -2.50 Total: 11.88 kcal Atomic # 7 Polarization: -59.27 SS G_CDS: -0.14 Total: -59.41 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: 0.08 Total: -13.58 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -37.02 -6.44 -43.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265926531.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.378 kcal (2) G-P(sol) polarization free energy of solvation -37.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds