Wall clock time and date at job start Mon Mar 30 2020 00:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46493 * 120.00070 * 2 1 4 4 C 1.50703 * 109.47085 * 269.99571 * 3 2 1 5 5 H 1.08004 * 119.99864 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00102 * 179.97438 * 4 3 2 7 7 N 1.31507 * 120.00231 * 0.02562 * 6 4 3 8 8 Si 1.86807 * 119.99828 * 180.02562 * 6 4 3 9 9 H 1.48495 * 109.46907 * 60.00514 * 8 6 4 10 10 H 1.48497 * 109.46888 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47060 * 300.00604 * 8 6 4 12 12 C 1.34773 * 119.99774 * 179.97438 * 2 1 3 13 13 O 1.21560 * 119.99930 * 183.07487 * 12 2 1 14 14 C 1.47807 * 120.00173 * 3.08287 * 12 2 1 15 15 N 1.32290 * 120.58761 * 353.84288 * 14 12 2 16 16 C 1.32689 * 121.19018 * 180.02562 * 15 14 12 17 17 C 1.35486 * 122.10778 * 0.02562 * 16 15 14 18 18 N 1.36212 * 120.52532 * 359.96418 * 17 16 15 19 19 C 1.36167 * 133.92527 * 180.38186 * 18 17 16 20 20 C 1.35346 * 107.14323 * 180.10224 * 19 18 17 21 21 N 1.33568 * 108.61167 * 359.57711 * 20 19 18 22 22 C 1.31859 * 109.13768 * 0.26746 * 21 20 19 23 23 H 1.09004 * 109.47028 * 263.90426 * 1 2 3 24 24 H 1.09001 * 109.47022 * 23.90385 * 1 2 3 25 25 H 1.09001 * 109.47333 * 143.90184 * 1 2 3 26 26 H 1.08998 * 109.47745 * 30.00023 * 3 2 1 27 27 H 1.08998 * 109.47324 * 149.99977 * 3 2 1 28 28 H 0.96999 * 120.00194 * 179.97438 * 7 6 4 29 29 H 1.07999 * 118.94690 * 179.97438 * 16 15 14 30 30 H 1.08007 * 119.73239 * 179.97438 * 17 16 15 31 31 H 1.08000 * 126.43430 * 359.93946 * 19 18 17 32 32 H 1.07998 * 125.69479 * 179.84286 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7036 -1.4208 5 1 2.0975 1.0960 -2.2417 6 6 3.1261 2.8778 -1.6728 7 7 3.5533 3.6180 -0.6733 8 14 3.4369 3.4173 -3.4341 9 1 2.1391 3.5946 -4.1337 10 1 4.1795 4.7033 -3.4341 11 1 4.2395 2.3826 -4.1344 12 6 2.1388 -1.1672 0.0005 13 8 3.3531 -1.1680 0.0570 14 6 1.4014 -2.4463 -0.0677 15 7 0.0800 -2.4656 -0.0076 16 6 -0.5941 -3.6070 -0.0672 17 6 0.0273 -4.8046 -0.1914 18 7 1.3858 -4.8753 -0.2606 19 6 2.2729 -5.9002 -0.3901 20 6 3.5123 -5.3563 -0.3986 21 7 3.3967 -4.0303 -0.2872 22 6 2.1196 -3.7133 -0.2020 23 1 -0.3633 -0.1091 1.0219 24 1 -0.3633 0.9395 -0.4164 25 1 -0.3634 -0.8304 -0.6055 26 1 1.6085 2.0284 0.5138 27 1 3.1499 1.1384 0.5138 28 1 4.0302 4.4439 -0.8506 29 1 -1.6724 -3.5806 -0.0143 30 1 -0.5594 -5.7103 -0.2359 31 1 2.0329 -6.9502 -0.4684 32 1 4.4397 -5.9028 -0.4858 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265926531.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:05:07 Heat of formation + Delta-G solvation = 72.829479 kcal Electronic energy + Delta-G solvation = -18936.220305 eV Core-core repulsion = 15898.787503 eV Total energy + Delta-G solvation = -3037.432802 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.101 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.02588 -40.79191 -39.24933 -36.64423 -35.45102 -34.61057 -31.69659 -30.70484 -29.65054 -27.63311 -26.45800 -24.70616 -24.28558 -22.95885 -20.95545 -19.60781 -18.76956 -18.65492 -17.32066 -17.23459 -16.92264 -16.53783 -16.33003 -16.06665 -15.34018 -14.85720 -14.71944 -14.38612 -14.02741 -13.88157 -13.67654 -13.49058 -13.14051 -12.88366 -12.61172 -12.54419 -12.21321 -11.75315 -11.24644 -11.15523 -10.64697 -10.44440 -10.05802 -9.43963 -9.18585 -8.22544 -6.38058 -0.99060 0.15731 1.29233 1.36081 1.41572 1.48747 1.68752 1.87916 2.09304 2.38947 2.60472 2.90431 3.02033 3.07102 3.27137 3.74465 4.01909 4.16636 4.36365 4.39566 4.60205 4.74787 4.83712 4.97445 5.03307 5.20345 5.30874 5.46753 5.56253 5.76831 5.82506 6.03472 6.39683 6.63528 6.69653 6.82478 7.21141 7.36762 8.84716 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.028450 B = 0.005519 C = 0.005080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.944431 B = 5072.454681 C = 5510.805692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.584 5.584 3 C 0.258 3.742 4 C -0.547 4.547 5 H 0.051 0.949 6 C 0.010 3.990 7 N -0.926 5.926 8 Si 0.970 3.030 9 H -0.258 1.258 10 H -0.274 1.274 11 H -0.280 1.280 12 C 0.545 3.455 13 O -0.564 6.564 14 C 0.141 3.859 15 N -0.413 5.413 16 C 0.007 3.993 17 C 0.059 3.941 18 N -0.357 5.357 19 C -0.055 4.055 20 C 0.005 3.995 21 N -0.503 5.503 22 C 0.160 3.840 23 H 0.065 0.935 24 H 0.061 0.939 25 H 0.114 0.886 26 H 0.032 0.968 27 H 0.001 0.999 28 H 0.269 0.731 29 H 0.235 0.765 30 H 0.239 0.761 31 H 0.249 0.751 32 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.602 -22.362 0.330 26.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.315 5.315 3 C 0.137 3.863 4 C -0.586 4.586 5 H 0.069 0.931 6 C -0.189 4.189 7 N -0.566 5.566 8 Si 0.793 3.207 9 H -0.182 1.182 10 H -0.198 1.198 11 H -0.206 1.206 12 C 0.331 3.669 13 O -0.442 6.442 14 C -0.022 4.022 15 N -0.130 5.130 16 C -0.134 4.134 17 C -0.065 4.065 18 N -0.032 5.032 19 C -0.188 4.188 20 C -0.145 4.145 21 N -0.224 5.224 22 C -0.087 4.087 23 H 0.084 0.916 24 H 0.080 0.920 25 H 0.132 0.868 26 H 0.050 0.950 27 H 0.019 0.981 28 H 0.078 0.922 29 H 0.251 0.749 30 H 0.255 0.745 31 H 0.265 0.735 32 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -12.855 -20.973 0.518 24.604 hybrid contribution 0.587 -0.456 -0.680 1.008 sum -12.268 -21.428 -0.162 24.692 Atomic orbital electron populations 1.22445 0.76955 1.03893 1.02972 1.48066 1.09115 1.05550 1.68745 1.18910 0.91273 0.79578 0.96501 1.21621 1.37459 1.06821 0.92667 0.93121 1.25863 0.94619 0.96187 1.02256 1.70040 1.38602 1.14771 1.33141 0.85443 0.78936 0.77400 0.78876 1.18239 1.19843 1.20597 1.17923 0.86532 0.83539 0.78897 1.90797 1.14849 1.87004 1.51537 1.21712 0.89426 0.89598 1.01431 1.68536 1.04509 1.30728 1.09199 1.23213 1.03623 0.85042 1.01522 1.23807 0.80285 1.04382 0.98054 1.43282 1.07881 1.08267 1.43758 1.23613 0.87465 0.95060 1.12657 1.23584 1.00064 0.88799 1.02101 1.70614 1.15513 1.16556 1.19738 1.22333 0.88216 0.88507 1.09601 0.91614 0.92039 0.86815 0.94962 0.98057 0.92216 0.74905 0.74492 0.73497 0.77146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.87 9.41 127.77 1.20 4.07 16 2 N -0.58 -28.67 2.86 -854.63 -2.44 -31.11 16 3 C 0.26 15.10 5.16 85.64 0.44 15.54 16 4 C -0.55 -33.60 9.39 25.60 0.24 -33.36 16 5 H 0.05 3.10 7.81 -2.91 -0.02 3.07 16 6 C 0.01 0.60 5.46 84.66 0.46 1.07 16 7 N -0.93 -58.03 13.29 21.45 0.28 -57.75 16 8 Si 0.97 46.78 29.54 68.60 2.03 48.80 16 9 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 10 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 11 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 12 C 0.55 27.58 7.66 86.78 0.66 28.24 16 13 O -0.56 -34.13 15.81 -3.90 -0.06 -34.19 16 14 C 0.14 5.46 6.84 43.69 0.30 5.76 16 15 N -0.41 -11.62 6.16 -181.36 -1.12 -12.74 16 16 C 0.01 0.10 11.01 83.93 0.92 1.03 16 17 C 0.06 0.73 11.00 83.38 0.92 1.65 16 18 N -0.36 -7.93 2.95 -347.29 -1.02 -8.96 16 19 C -0.06 -0.93 11.80 83.35 0.98 0.05 16 20 C 0.01 0.14 11.84 83.76 0.99 1.13 16 21 N -0.50 -19.91 10.76 -189.61 -2.04 -21.95 16 22 C 0.16 5.80 7.66 135.58 1.04 6.84 16 23 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 24 H 0.06 2.23 8.03 -2.39 -0.02 2.21 16 25 H 0.11 3.65 5.17 -3.36 -0.02 3.63 16 26 H 0.03 1.87 8.07 -2.39 -0.02 1.85 16 27 H 0.00 0.09 7.38 -2.39 -0.02 0.07 16 28 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 29 H 0.23 1.03 8.06 -2.91 -0.02 1.01 16 30 H 0.24 -0.22 8.06 -2.91 -0.02 -0.24 16 31 H 0.25 0.97 8.06 -2.91 -0.02 0.94 16 32 H 0.21 3.70 8.06 -2.91 -0.02 3.68 16 Total: -1.00 -93.27 285.04 4.93 -88.33 By element: Atomic # 1 Polarization: -3.60 SS G_CDS: 1.14 Total: -2.46 kcal Atomic # 6 Polarization: 23.85 SS G_CDS: 8.16 Total: 32.02 kcal Atomic # 7 Polarization: -126.17 SS G_CDS: -6.34 Total: -132.51 kcal Atomic # 8 Polarization: -34.13 SS G_CDS: -0.06 Total: -34.19 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.80 kcal Total: -93.27 4.93 -88.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265926531.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.164 kcal (2) G-P(sol) polarization free energy of solvation -93.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds