Wall clock time and date at job start Mon Mar 30 2020 00:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86803 * 119.99739 * 2 1 4 4 H 1.48505 * 109.47013 * 269.99599 * 3 2 1 5 5 H 1.48497 * 109.47265 * 29.99915 * 3 2 1 6 6 H 1.48504 * 109.47163 * 149.99859 * 3 2 1 7 7 C 1.39933 * 120.00091 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99832 * 162.62064 * 7 2 1 9 9 C 1.41435 * 119.99864 * 342.61163 * 7 2 1 10 10 C 1.40795 * 120.17247 * 154.90719 * 9 7 2 11 11 C 1.37717 * 120.05084 * 180.02562 * 10 9 7 12 12 C 1.38363 * 120.41663 * 359.74194 * 11 10 9 13 13 C 1.39927 * 120.35405 * 0.51122 * 12 11 10 14 14 C 1.47760 * 120.03052 * 179.76932 * 13 12 11 15 15 O 1.21465 * 120.00118 * 179.72628 * 14 13 12 16 16 O 1.34710 * 120.00121 * 359.72268 * 14 13 12 17 17 C 1.45199 * 116.99868 * 180.02562 * 16 14 13 18 18 C 1.53006 * 109.46805 * 180.02562 * 17 16 14 19 19 C 1.53004 * 109.46902 * 179.97438 * 18 17 16 20 20 C 1.52999 * 117.49611 * 243.74413 * 19 18 17 21 21 C 1.52998 * 117.49481 * 175.08566 * 19 18 17 22 22 C 1.39087 * 119.93321 * 359.49027 * 13 12 11 23 23 H 0.96993 * 120.00065 * 0.02562 * 1 2 3 24 24 H 1.08001 * 119.97174 * 0.04178 * 10 9 7 25 25 H 1.08000 * 119.79081 * 180.02562 * 11 10 9 26 26 H 1.08003 * 119.81959 * 180.28478 * 12 11 10 27 27 H 1.09000 * 109.47042 * 60.00099 * 17 16 14 28 28 H 1.08994 * 109.47025 * 299.99534 * 17 16 14 29 29 H 1.08994 * 109.47476 * 59.99797 * 18 17 16 30 30 H 1.09004 * 109.46814 * 299.99425 * 18 17 16 31 31 H 1.08997 * 115.55182 * 29.41690 * 19 18 17 32 32 H 1.08995 * 117.49991 * 0.02562 * 20 19 18 33 33 H 1.09001 * 117.49395 * 145.02459 * 20 19 18 34 34 H 1.09001 * 117.49754 * 214.97533 * 21 19 18 35 35 H 1.08996 * 117.50360 * 0.02562 * 21 19 18 36 36 H 1.08007 * 120.20232 * 180.22335 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 1.4397 2.6527 0.7000 6 1 3.5398 1.4403 0.7001 7 6 2.0080 -1.2118 -0.0005 8 1 3.0510 -1.2330 -0.2799 9 6 1.3493 -2.4089 0.3650 10 6 1.8189 -3.6484 -0.1097 11 6 1.1753 -4.8124 0.2473 12 6 0.0686 -4.7748 1.0770 13 6 -0.4159 -3.5520 1.5545 14 6 -1.6013 -3.5197 2.4360 15 8 -2.0185 -2.4584 2.8542 16 8 -2.2194 -4.6674 2.7758 17 6 -3.3779 -4.5599 3.6445 18 6 -3.9409 -5.9560 3.9188 19 6 -5.1613 -5.8428 4.8347 20 6 -5.0675 -6.4869 6.2193 21 6 -5.9401 -7.1250 5.1354 22 6 0.2228 -2.3675 1.2031 23 1 -0.4850 0.8400 -0.0004 24 1 2.6847 -3.6864 -0.7542 25 1 1.5394 -5.7609 -0.1189 26 1 -0.4260 -5.6939 1.3546 27 1 -4.1399 -3.9493 3.1600 28 1 -3.0844 -4.0956 4.5858 29 1 -3.1788 -6.5663 4.4034 30 1 -4.2344 -6.4208 2.9776 31 1 -5.7302 -4.9171 4.7477 32 1 -4.1364 -6.9909 6.4779 33 1 -5.5751 -5.9851 7.0431 34 1 -7.0212 -7.0427 5.2467 35 1 -5.5828 -8.0491 4.6812 36 1 -0.1453 -1.4215 1.5721 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744285708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:11:07 Heat of formation + Delta-G solvation = -59.704028 kcal Electronic energy + Delta-G solvation = -18259.292259 eV Core-core repulsion = 15287.359964 eV Total energy + Delta-G solvation = -2971.932294 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.120 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.74771 -37.89155 -37.28748 -35.70002 -33.75781 -31.29782 -30.10266 -29.49972 -25.43973 -24.33532 -22.63987 -22.34623 -20.98726 -20.69240 -19.67191 -17.80941 -16.47529 -16.21693 -15.98077 -15.53671 -14.93658 -14.63876 -14.35106 -13.86344 -13.43167 -13.28140 -12.68265 -12.50805 -12.08315 -11.83494 -11.73605 -11.64389 -11.34799 -11.18680 -11.09606 -10.78386 -10.54134 -10.51543 -10.29297 -10.18880 -9.98081 -9.73403 -9.46514 -9.24462 -7.74792 -7.55977 -6.83252 -4.44545 1.98540 2.77394 3.06217 3.08706 3.14190 3.18773 3.59799 3.60835 3.89817 4.54474 4.58255 4.68217 4.72216 5.01906 5.18399 5.40436 5.43370 5.46903 5.53453 5.58593 5.71945 5.88061 5.90672 5.98254 6.11245 6.16711 6.39862 6.64035 6.92889 6.95404 7.00785 7.16384 7.30448 7.67751 7.74812 7.90129 8.09632 8.43480 8.57390 8.76301 8.78343 10.12203 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.031811 B = 0.003968 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.991183 B = 7054.588951 C = 7773.121064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.460 4.460 8 H 0.082 0.918 9 C 0.096 3.904 10 C -0.201 4.201 11 C -0.104 4.104 12 C -0.194 4.194 13 C -0.115 4.115 14 C 0.512 3.488 15 O -0.519 6.519 16 O -0.358 6.358 17 C 0.069 3.931 18 C -0.088 4.088 19 C -0.152 4.152 20 C -0.181 4.181 21 C -0.178 4.178 22 C -0.089 4.089 23 H 0.285 0.715 24 H 0.099 0.901 25 H 0.097 0.903 26 H 0.103 0.897 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.107 0.893 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.035 -8.474 6.783 12.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.489 4.489 8 H 0.100 0.900 9 C 0.093 3.907 10 C -0.221 4.221 11 C -0.122 4.122 12 C -0.213 4.213 13 C -0.116 4.116 14 C 0.359 3.641 15 O -0.408 6.408 16 O -0.275 6.275 17 C -0.006 4.006 18 C -0.125 4.125 19 C -0.170 4.170 20 C -0.218 4.218 21 C -0.215 4.215 22 C -0.109 4.109 23 H 0.096 0.904 24 H 0.117 0.883 25 H 0.115 0.885 26 H 0.121 0.879 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.125 0.875 32 H 0.114 0.886 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.114 0.886 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.400 -7.999 6.915 12.906 hybrid contribution 0.102 0.864 0.031 0.870 sum -7.298 -7.135 6.946 12.346 Atomic orbital electron populations 1.69775 1.07609 1.29811 1.33993 1.25966 0.94780 1.01593 0.92246 0.86269 0.80596 0.80419 0.79245 1.19414 1.19967 1.18360 1.19555 0.98085 0.90882 1.40413 0.89955 1.17540 0.91146 0.92620 0.89367 1.21193 1.03163 0.92783 1.04975 1.20512 0.96195 0.96916 0.98600 1.20571 1.00272 0.95355 1.05142 1.18844 0.94944 0.95919 1.01924 1.21862 0.83007 0.80864 0.78367 1.90757 1.65338 1.31478 1.53269 1.86567 1.42139 1.36161 1.62676 1.22870 0.86435 0.97661 0.93603 1.21101 0.95544 0.96071 0.99781 1.22164 0.99488 0.97710 0.97651 1.23086 1.02197 1.04199 0.92293 1.22976 0.98208 0.96847 1.03443 1.21648 0.96503 0.95971 0.96767 0.90422 0.88330 0.88526 0.87871 0.91571 0.91555 0.90686 0.90392 0.87487 0.88583 0.88834 0.88772 0.88626 0.84729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.70 10.97 55.55 0.61 -20.09 16 2 C 0.07 1.83 5.14 -17.34 -0.09 1.74 16 3 Si 0.91 18.60 29.59 -169.99 -5.03 13.57 16 4 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 5 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 6 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 7 C -0.46 -11.98 9.05 -37.73 -0.34 -12.32 16 8 H 0.08 2.02 7.90 -52.49 -0.41 1.61 16 9 C 0.10 2.52 5.57 -106.87 -0.59 1.93 16 10 C -0.20 -4.76 9.78 -38.81 -0.38 -5.14 16 11 C -0.10 -2.25 10.01 -39.73 -0.40 -2.65 16 12 C -0.19 -4.30 9.62 -38.90 -0.37 -4.68 16 13 C -0.11 -2.81 5.87 -105.06 -0.62 -3.42 16 14 C 0.51 11.74 7.90 34.62 0.27 12.02 16 15 O -0.52 -12.92 16.12 -19.24 -0.31 -13.23 16 16 O -0.36 -6.87 9.46 -40.52 -0.38 -7.26 16 17 C 0.07 1.04 5.43 37.16 0.20 1.25 16 18 C -0.09 -1.02 5.88 -26.73 -0.16 -1.18 16 19 C -0.15 -1.49 5.73 -90.62 -0.52 -2.01 16 20 C -0.18 -1.57 10.18 -26.69 -0.27 -1.84 16 21 C -0.18 -1.47 10.25 -26.69 -0.27 -1.75 16 22 C -0.09 -2.39 8.23 -38.43 -0.32 -2.70 16 23 H 0.28 6.86 8.30 -40.82 -0.34 6.53 16 24 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 25 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 26 H 0.10 2.05 7.59 -52.48 -0.40 1.66 16 27 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.07 0.85 7.87 -51.93 -0.41 0.44 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.11 1.03 8.08 -51.93 -0.42 0.61 16 32 H 0.10 0.81 8.03 -51.93 -0.42 0.39 16 33 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.14 3.84 5.77 -52.48 -0.30 3.54 16 LS Contribution 314.60 15.07 4.74 4.74 Total: -1.00 -28.54 314.60 -9.11 -37.65 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -4.88 Total: 5.40 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: -3.86 Total: -20.77 kcal Atomic # 7 Polarization: -20.70 SS G_CDS: 0.61 Total: -20.09 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -0.69 Total: -20.49 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.03 Total: 13.57 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.54 -9.11 -37.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744285708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.059 kcal (2) G-P(sol) polarization free energy of solvation -28.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds