Wall clock time and date at job start Sun Mar 29 2020 23:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86798 * 120.00018 * 2 1 4 4 H 1.48500 * 109.47493 * 270.00255 * 3 2 1 5 5 H 1.48505 * 109.47029 * 30.00137 * 3 2 1 6 6 H 1.48499 * 109.46985 * 150.00367 * 3 2 1 7 7 C 1.38950 * 120.00178 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99571 * 359.97438 * 7 2 1 9 9 N 1.37099 * 120.00244 * 179.97438 * 7 2 1 10 10 C 1.34771 * 119.99952 * 179.97438 * 9 7 2 11 11 O 1.21299 * 120.00105 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99875 * 179.97438 * 10 9 7 13 13 N 1.46898 * 109.47057 * 173.86919 * 12 10 9 14 14 C 1.46428 * 111.00469 * 296.87949 * 13 12 10 15 15 C 1.53369 * 108.67785 * 178.97866 * 14 13 12 16 16 C 1.53037 * 107.94660 * 291.84226 * 15 14 13 17 17 C 1.50796 * 109.66154 * 47.36165 * 16 15 14 18 18 C 1.38617 * 118.13334 * 164.37053 * 17 16 15 19 19 C 1.38052 * 120.48435 * 179.38186 * 18 17 16 20 20 C 1.38302 * 119.89293 * 0.22440 * 19 18 17 21 21 C 1.37810 * 119.95630 * 359.64200 * 20 19 18 22 22 C 1.38376 * 122.00549 * 344.01139 * 17 16 15 23 23 H 0.96995 * 120.00113 * 359.97438 * 1 2 3 24 24 H 0.96994 * 120.00016 * 359.97438 * 9 7 2 25 25 H 1.09004 * 109.46734 * 53.87774 * 12 10 9 26 26 H 1.08994 * 109.47363 * 293.87421 * 12 10 9 27 27 H 1.09005 * 109.59931 * 298.73669 * 14 13 12 28 28 H 1.08993 * 109.60336 * 59.05190 * 14 13 12 29 29 H 1.09000 * 109.77256 * 51.45951 * 15 14 13 30 30 H 1.09004 * 109.76226 * 172.18221 * 15 14 13 31 31 H 1.09000 * 109.44022 * 287.30222 * 16 15 14 32 32 H 1.09003 * 109.43902 * 167.41955 * 16 15 14 33 33 H 1.07997 * 119.75674 * 359.36513 * 18 17 16 34 34 H 1.08003 * 120.04799 * 179.97438 * 19 18 17 35 35 H 1.07998 * 120.02725 * 179.89932 * 20 19 18 36 36 H 1.07995 * 119.79654 * 180.27895 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5457 1.4401 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 1.4688 -2.1386 -0.0005 9 7 3.3799 -1.2033 -0.0011 10 6 4.0537 -2.3705 -0.0011 11 8 3.4472 -3.4210 -0.0001 12 6 5.5607 -2.3705 -0.0022 13 7 6.0505 -3.7475 0.1459 14 6 5.6437 -4.3135 1.4337 15 6 6.1592 -5.7553 1.5212 16 6 5.3902 -6.5940 0.4979 17 6 5.3635 -5.8770 -0.8285 18 6 5.0110 -6.6018 -1.9563 19 6 4.9584 -5.9909 -3.1932 20 6 5.2636 -4.6472 -3.3118 21 6 5.6123 -3.9194 -2.1947 22 6 5.6707 -4.5326 -0.9417 23 1 -0.4850 0.8400 0.0004 24 1 3.8649 -0.3634 -0.0014 25 1 5.9246 -1.7643 0.8274 26 1 5.9233 -1.9550 -0.9424 27 1 6.0707 -3.7226 2.2440 28 1 4.5564 -4.3061 1.5093 29 1 7.2247 -5.7805 1.2925 30 1 5.9882 -6.1477 2.5237 31 1 4.3695 -6.7473 0.8480 32 1 5.8810 -7.5600 0.3782 33 1 4.7760 -7.6520 -1.8667 34 1 4.6833 -6.5624 -4.0673 35 1 5.2248 -4.1675 -4.2786 36 1 5.8457 -2.8693 -2.2896 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076667708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:57:25 Heat of formation + Delta-G solvation = 3.978470 kcal Electronic energy + Delta-G solvation = -19771.200919 eV Core-core repulsion = 16834.322857 eV Total energy + Delta-G solvation = -2936.878063 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.51986 -38.16973 -36.18387 -34.25005 -33.69628 -31.74026 -29.95394 -29.52269 -27.66895 -24.79357 -23.72268 -22.86771 -21.47157 -19.48172 -19.17483 -18.34551 -16.76984 -16.29075 -15.74629 -15.25766 -14.79434 -14.48599 -14.31153 -13.57739 -13.48881 -13.24045 -13.11595 -12.93009 -12.59847 -12.33744 -12.04608 -11.80158 -11.47833 -11.19844 -11.16216 -10.85596 -10.64737 -10.52378 -10.17351 -10.05200 -9.80463 -9.52207 -8.68093 -8.29785 -8.22471 -7.15158 -6.36689 -3.88016 1.82531 1.87975 2.98258 3.03014 3.11593 3.62780 3.91817 4.05243 4.38227 4.60762 4.93740 5.04492 5.11259 5.25753 5.28378 5.38579 5.56299 5.62581 5.66987 5.77244 5.79497 5.83329 5.94886 5.98145 6.06659 6.15931 6.23431 6.42755 6.45750 6.63476 6.82782 6.96534 7.14474 7.36796 7.50528 7.70779 8.07849 8.51568 8.88420 9.35723 9.73228 10.76199 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.025585 B = 0.006248 C = 0.005803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.141112 B = 4480.309895 C = 4824.160367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.043 3.957 3 Si 0.879 3.121 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.269 1.269 7 C -0.306 4.306 8 H 0.119 0.881 9 N -0.583 5.583 10 C 0.417 3.583 11 O -0.562 6.562 12 C 0.033 3.967 13 N -0.474 5.474 14 C 0.041 3.959 15 C -0.117 4.117 16 C -0.074 4.074 17 C -0.115 4.115 18 C -0.096 4.096 19 C -0.158 4.158 20 C -0.097 4.097 21 C -0.158 4.158 22 C 0.163 3.837 23 H 0.274 0.726 24 H 0.371 0.629 25 H 0.095 0.905 26 H 0.100 0.900 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.114 0.886 34 H 0.113 0.887 35 H 0.115 0.885 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.657 -6.816 -0.749 15.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.161 4.161 3 Si 0.705 3.295 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.194 1.194 7 C -0.434 4.434 8 H 0.136 0.864 9 N -0.222 5.222 10 C 0.202 3.798 11 O -0.445 6.445 12 C -0.097 4.097 13 N -0.186 5.186 14 C -0.085 4.085 15 C -0.155 4.155 16 C -0.111 4.111 17 C -0.118 4.118 18 C -0.115 4.115 19 C -0.177 4.177 20 C -0.116 4.116 21 C -0.178 4.178 22 C 0.065 3.935 23 H 0.085 0.915 24 H 0.204 0.796 25 H 0.114 0.886 26 H 0.118 0.882 27 H 0.092 0.908 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.132 0.868 34 H 0.131 0.869 35 H 0.133 0.867 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 13.550 -7.336 -0.649 15.422 hybrid contribution -0.305 1.556 -0.072 1.588 sum 13.244 -5.779 -0.722 14.469 Atomic orbital electron populations 1.69620 1.05692 1.27598 1.48895 1.25058 0.95498 0.98039 0.97480 0.86679 0.79803 0.83992 0.78984 1.19532 1.20099 1.19434 1.19434 0.79281 0.96600 1.48124 0.86351 1.42270 1.07597 1.06213 1.66090 1.20617 0.89451 0.84894 0.84801 1.90578 1.69188 1.30518 1.54262 1.22330 0.93302 0.89829 1.04211 1.58595 1.55397 1.02153 1.02484 1.22361 1.02049 0.95032 0.89034 1.21646 1.00176 0.94618 0.99020 1.20451 1.00890 0.97617 0.92144 1.19327 1.03853 0.93133 0.95444 1.20813 0.99429 0.99068 0.92204 1.20806 1.04539 0.95199 0.97175 1.20787 0.98698 0.94242 0.97827 1.21023 1.05158 0.99672 0.91981 1.18322 0.93054 0.91753 0.90407 0.91540 0.79645 0.88649 0.88191 0.90778 0.90161 0.91283 0.90987 0.90786 0.91337 0.86799 0.86870 0.86674 0.86374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.53 13.96 55.50 0.77 -24.76 16 2 C 0.04 1.16 5.50 -17.47 -0.10 1.06 16 3 Si 0.88 19.16 27.74 -169.99 -4.71 14.45 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 6 H -0.27 -5.31 6.52 56.52 0.37 -4.94 16 7 C -0.31 -8.56 10.16 -14.93 -0.15 -8.71 16 8 H 0.12 3.82 7.39 -52.49 -0.39 3.44 16 9 N -0.58 -13.65 5.09 -10.96 -0.06 -13.71 16 10 C 0.42 9.24 6.77 -10.99 -0.07 9.16 16 11 O -0.56 -14.51 12.55 5.54 0.07 -14.44 16 12 C 0.03 0.56 5.39 -4.98 -0.03 0.53 16 13 N -0.47 -7.97 4.72 -172.66 -0.82 -8.79 16 14 C 0.04 0.66 5.17 -3.89 -0.02 0.64 16 15 C -0.12 -1.55 6.19 -26.52 -0.16 -1.72 16 16 C -0.07 -1.06 5.81 -27.82 -0.16 -1.22 16 17 C -0.11 -1.95 5.74 -104.38 -0.60 -2.55 16 18 C -0.10 -1.52 9.63 -39.51 -0.38 -1.90 16 19 C -0.16 -2.44 10.05 -39.63 -0.40 -2.84 16 20 C -0.10 -1.56 10.03 -39.71 -0.40 -1.96 16 21 C -0.16 -2.77 8.65 -39.22 -0.34 -3.10 16 22 C 0.16 2.94 4.04 -83.85 -0.34 2.61 16 23 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 24 H 0.37 7.61 5.76 -40.82 -0.24 7.38 16 25 H 0.10 1.36 8.14 -51.93 -0.42 0.93 16 26 H 0.10 1.49 5.87 -51.93 -0.30 1.19 16 27 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.08 1.57 5.80 -51.93 -0.30 1.27 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 34 H 0.11 1.44 8.06 -52.48 -0.42 1.02 16 35 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 36 H 0.12 1.91 5.81 -52.49 -0.30 1.60 16 LS Contribution 289.87 15.07 4.37 4.37 Total: -1.00 -32.22 289.87 -8.03 -40.25 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -4.51 Total: 12.63 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: -3.15 Total: -10.00 kcal Atomic # 7 Polarization: -47.16 SS G_CDS: -0.10 Total: -47.25 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: 0.07 Total: -14.44 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -4.71 Total: 14.45 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -32.22 -8.03 -40.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076667708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.225 kcal (2) G-P(sol) polarization free energy of solvation -32.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds