Wall clock time and date at job start Sun Mar 29 2020 23:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86798 * 120.00018 * 2 1 4 4 H 1.48500 * 109.47493 * 270.00255 * 3 2 1 5 5 H 1.48505 * 109.47029 * 30.00137 * 3 2 1 6 6 H 1.48499 * 109.46985 * 150.00367 * 3 2 1 7 7 C 1.38950 * 120.00178 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99571 * 359.97438 * 7 2 1 9 9 N 1.37099 * 120.00244 * 179.97438 * 7 2 1 10 10 C 1.34771 * 119.99952 * 179.97438 * 9 7 2 11 11 O 1.21299 * 120.00105 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99875 * 179.97438 * 10 9 7 13 13 N 1.46898 * 109.47057 * 173.86919 * 12 10 9 14 14 C 1.46428 * 111.00469 * 296.87949 * 13 12 10 15 15 C 1.53369 * 108.67785 * 178.97866 * 14 13 12 16 16 C 1.53037 * 107.94660 * 291.84226 * 15 14 13 17 17 C 1.50796 * 109.66154 * 47.36165 * 16 15 14 18 18 C 1.38617 * 118.13334 * 164.37053 * 17 16 15 19 19 C 1.38052 * 120.48435 * 179.38186 * 18 17 16 20 20 C 1.38302 * 119.89293 * 0.22440 * 19 18 17 21 21 C 1.37810 * 119.95630 * 359.64200 * 20 19 18 22 22 C 1.38376 * 122.00549 * 344.01139 * 17 16 15 23 23 H 0.96995 * 120.00113 * 359.97438 * 1 2 3 24 24 H 0.96994 * 120.00016 * 359.97438 * 9 7 2 25 25 H 1.09004 * 109.46734 * 53.87774 * 12 10 9 26 26 H 1.08994 * 109.47363 * 293.87421 * 12 10 9 27 27 H 1.09005 * 109.59931 * 298.73669 * 14 13 12 28 28 H 1.08993 * 109.60336 * 59.05190 * 14 13 12 29 29 H 1.09000 * 109.77256 * 51.45951 * 15 14 13 30 30 H 1.09004 * 109.76226 * 172.18221 * 15 14 13 31 31 H 1.09000 * 109.44022 * 287.30222 * 16 15 14 32 32 H 1.09003 * 109.43902 * 167.41955 * 16 15 14 33 33 H 1.07997 * 119.75674 * 359.36513 * 18 17 16 34 34 H 1.08003 * 120.04799 * 179.97438 * 19 18 17 35 35 H 1.07998 * 120.02725 * 179.89932 * 20 19 18 36 36 H 1.07995 * 119.79654 * 180.27895 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5457 1.4401 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 1.4688 -2.1386 -0.0005 9 7 3.3799 -1.2033 -0.0011 10 6 4.0537 -2.3705 -0.0011 11 8 3.4472 -3.4210 -0.0001 12 6 5.5607 -2.3705 -0.0022 13 7 6.0505 -3.7475 0.1459 14 6 5.6437 -4.3135 1.4337 15 6 6.1592 -5.7553 1.5212 16 6 5.3902 -6.5940 0.4979 17 6 5.3635 -5.8770 -0.8285 18 6 5.0110 -6.6018 -1.9563 19 6 4.9584 -5.9909 -3.1932 20 6 5.2636 -4.6472 -3.3118 21 6 5.6123 -3.9194 -2.1947 22 6 5.6707 -4.5326 -0.9417 23 1 -0.4850 0.8400 0.0004 24 1 3.8649 -0.3634 -0.0014 25 1 5.9246 -1.7643 0.8274 26 1 5.9233 -1.9550 -0.9424 27 1 6.0707 -3.7226 2.2440 28 1 4.5564 -4.3061 1.5093 29 1 7.2247 -5.7805 1.2925 30 1 5.9882 -6.1477 2.5237 31 1 4.3695 -6.7473 0.8480 32 1 5.8810 -7.5600 0.3782 33 1 4.7760 -7.6520 -1.8667 34 1 4.6833 -6.5624 -4.0673 35 1 5.2248 -4.1675 -4.2786 36 1 5.8457 -2.8693 -2.2896 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076667708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:57:24 Heat of formation + Delta-G solvation = -18.552359 kcal Electronic energy + Delta-G solvation = -19772.177929 eV Core-core repulsion = 16834.322857 eV Total energy + Delta-G solvation = -2937.855073 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.87181 -39.82157 -37.50090 -36.00134 -35.13725 -33.78076 -31.15384 -30.80017 -29.14059 -26.53473 -25.10071 -24.05644 -22.84353 -21.29322 -20.53818 -20.08587 -18.09369 -17.92368 -17.06817 -16.88588 -16.30494 -15.90950 -15.66309 -15.17256 -15.00509 -14.74232 -14.50106 -14.31822 -14.10622 -13.83137 -13.42452 -13.13235 -12.99089 -12.62223 -12.44078 -12.35671 -12.05435 -12.00793 -11.68479 -11.51026 -11.35374 -11.15173 -10.37208 -10.20603 -9.54438 -8.50119 -8.43992 -6.04569 0.56834 0.61362 1.28207 1.33331 1.42463 1.89420 2.20648 2.65647 2.87843 3.12304 3.17862 3.77016 3.91793 3.96486 4.10021 4.20452 4.25717 4.34613 4.44258 4.53305 4.56510 4.63664 4.75996 4.82239 4.91415 5.00466 5.05509 5.25222 5.25674 5.41839 5.50459 5.60564 5.72289 5.89499 5.92286 6.10983 6.43707 6.54762 6.84897 7.35216 7.90909 8.73643 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.025585 B = 0.006248 C = 0.005803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.141112 B = 4480.309895 C = 4824.160367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.963 3.037 4 H -0.258 1.258 5 H -0.275 1.275 6 H -0.229 1.229 7 C -0.325 4.325 8 H 0.052 0.948 9 N -0.586 5.586 10 C 0.422 3.578 11 O -0.603 6.603 12 C 0.040 3.960 13 N -0.466 5.466 14 C 0.037 3.963 15 C -0.109 4.109 16 C -0.075 4.075 17 C -0.137 4.137 18 C -0.109 4.109 19 C -0.164 4.164 20 C -0.111 4.111 21 C -0.180 4.180 22 C 0.136 3.864 23 H 0.279 0.721 24 H 0.389 0.611 25 H 0.132 0.868 26 H 0.125 0.875 27 H 0.097 0.903 28 H 0.036 0.964 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.057 0.943 32 H 0.095 0.905 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.136 0.864 36 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.711 -5.862 -0.726 17.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.213 4.213 3 Si 0.783 3.217 4 H -0.182 1.182 5 H -0.200 1.200 6 H -0.152 1.152 7 C -0.455 4.455 8 H 0.070 0.930 9 N -0.228 5.228 10 C 0.209 3.791 11 O -0.487 6.487 12 C -0.090 4.090 13 N -0.178 5.178 14 C -0.089 4.089 15 C -0.147 4.147 16 C -0.112 4.112 17 C -0.139 4.139 18 C -0.127 4.127 19 C -0.183 4.183 20 C -0.130 4.130 21 C -0.201 4.201 22 C 0.037 3.963 23 H 0.088 0.912 24 H 0.225 0.775 25 H 0.150 0.850 26 H 0.143 0.857 27 H 0.115 0.885 28 H 0.055 0.945 29 H 0.100 0.900 30 H 0.113 0.887 31 H 0.075 0.925 32 H 0.113 0.887 33 H 0.155 0.845 34 H 0.157 0.843 35 H 0.154 0.846 36 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 16.636 -6.408 -0.629 17.839 hybrid contribution -1.317 1.057 -0.124 1.693 sum 15.319 -5.351 -0.753 16.245 Atomic orbital electron populations 1.69805 1.08199 1.29256 1.50227 1.26119 0.96440 1.02728 0.96025 0.85391 0.79598 0.76754 0.79967 1.18208 1.20033 1.15230 1.18959 0.81544 0.94729 1.50242 0.92967 1.42091 1.05789 1.07633 1.67272 1.21788 0.91866 0.83709 0.81747 1.90574 1.71004 1.32173 1.54954 1.22481 0.88449 0.90975 1.07056 1.58748 1.54690 1.01931 1.02451 1.22415 0.99539 0.97439 0.89495 1.21650 1.00403 0.92659 0.99974 1.20518 1.00481 0.98926 0.91324 1.19798 1.03708 0.93409 0.97031 1.21219 0.98958 1.00383 0.92157 1.21216 1.03599 0.95329 0.98144 1.21161 0.98413 0.94823 0.98561 1.21317 1.05845 1.00444 0.92455 1.18637 0.94119 0.92529 0.90978 0.91156 0.77503 0.85028 0.85727 0.88477 0.94529 0.90039 0.88691 0.92451 0.88659 0.84477 0.84273 0.84614 0.85518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.45 13.96 21.66 0.30 -56.15 16 2 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 3 Si 0.96 38.55 27.74 68.60 1.90 40.45 16 4 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 5 H -0.28 -10.97 7.11 99.48 0.71 -10.26 16 6 H -0.23 -7.64 6.52 99.48 0.65 -6.99 16 7 C -0.33 -18.99 10.16 84.04 0.85 -18.13 16 8 H 0.05 3.66 7.39 -2.91 -0.02 3.64 16 9 N -0.59 -27.31 5.09 -306.98 -1.56 -28.87 16 10 C 0.42 18.67 6.77 87.66 0.59 19.27 16 11 O -0.60 -32.32 12.55 -3.09 -0.04 -32.36 16 12 C 0.04 1.25 5.39 85.56 0.46 1.71 16 13 N -0.47 -14.88 4.72 -700.17 -3.31 -18.19 16 14 C 0.04 1.14 5.17 86.52 0.45 1.59 16 15 C -0.11 -2.70 6.19 30.73 0.19 -2.51 16 16 C -0.08 -2.09 5.81 29.89 0.17 -1.92 16 17 C -0.14 -4.58 5.74 -19.71 -0.11 -4.69 16 18 C -0.11 -3.32 9.63 22.32 0.21 -3.11 16 19 C -0.16 -4.87 10.05 22.24 0.22 -4.64 16 20 C -0.11 -3.48 10.03 22.18 0.22 -3.26 16 21 C -0.18 -6.16 8.65 22.50 0.19 -5.97 16 22 C 0.14 4.79 4.04 38.30 0.15 4.94 16 23 H 0.28 15.41 8.31 -92.71 -0.77 14.64 16 24 H 0.39 14.98 5.76 -92.71 -0.53 14.44 16 25 H 0.13 3.20 8.14 -2.38 -0.02 3.18 16 26 H 0.13 3.33 5.87 -2.39 -0.01 3.32 16 27 H 0.10 2.47 8.14 -2.38 -0.02 2.45 16 28 H 0.04 1.46 5.80 -2.39 -0.01 1.45 16 29 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.09 1.88 8.14 -2.39 -0.02 1.87 16 31 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16 34 H 0.14 3.27 8.06 -2.91 -0.02 3.24 16 35 H 0.14 3.52 8.06 -2.91 -0.02 3.50 16 36 H 0.13 3.90 5.81 -2.91 -0.02 3.89 16 Total: -1.00 -75.83 289.87 1.89 -73.94 By element: Atomic # 1 Polarization: 37.70 SS G_CDS: 0.50 Total: 38.21 kcal Atomic # 6 Polarization: -21.12 SS G_CDS: 4.08 Total: -17.04 kcal Atomic # 7 Polarization: -98.64 SS G_CDS: -4.57 Total: -103.21 kcal Atomic # 8 Polarization: -32.32 SS G_CDS: -0.04 Total: -32.36 kcal Atomic # 14 Polarization: 38.55 SS G_CDS: 1.90 Total: 40.45 kcal Total: -75.83 1.89 -73.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076667708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.389 kcal (2) G-P(sol) polarization free energy of solvation -75.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds