Wall clock time and date at job start Mon Mar 30 2020 00:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86795 * 120.00227 * 2 1 4 4 H 1.48503 * 109.47294 * 270.00278 * 3 2 1 5 5 H 1.48499 * 109.47218 * 30.00138 * 3 2 1 6 6 H 1.48505 * 109.47256 * 150.00144 * 3 2 1 7 7 C 1.38811 * 119.99700 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00547 * 359.97438 * 7 2 1 9 9 N 1.36945 * 120.00031 * 179.97438 * 7 2 1 10 10 C 1.46493 * 119.99892 * 179.72716 * 9 7 2 11 11 C 1.53001 * 109.47086 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.47367 * 179.97438 * 11 10 9 13 13 N 1.46498 * 109.47310 * 180.02562 * 12 11 10 14 14 C 1.34778 * 120.00062 * 180.02562 * 13 12 11 15 15 O 1.21274 * 120.00271 * 359.97438 * 14 13 12 16 16 C 1.50698 * 120.00117 * 179.97438 * 14 13 12 17 17 F 1.39905 * 110.43812 * 310.70246 * 16 14 13 18 18 C 1.54810 * 110.48991 * 188.15523 * 16 14 13 19 19 C 1.55230 * 101.98700 * 220.51740 * 18 16 14 20 20 O 1.44379 * 103.56455 * 36.88350 * 19 18 16 21 21 C 1.43738 * 106.97475 * 320.00857 * 20 19 18 22 22 H 0.97004 * 120.00256 * 359.97438 * 1 2 3 23 23 H 0.97000 * 119.99317 * 359.97438 * 9 7 2 24 24 H 1.08998 * 109.47351 * 299.99725 * 10 9 7 25 25 H 1.09001 * 109.47288 * 59.99879 * 10 9 7 26 26 H 1.08998 * 109.47065 * 300.00224 * 11 10 9 27 27 H 1.09001 * 109.46892 * 59.99959 * 11 10 9 28 28 H 1.09007 * 109.47198 * 299.99944 * 12 11 10 29 29 H 1.08998 * 109.47543 * 59.99686 * 12 11 10 30 30 H 0.96998 * 120.00378 * 359.97438 * 13 12 11 31 31 H 1.09000 * 110.90766 * 338.64226 * 18 16 14 32 32 H 1.09001 * 110.90630 * 102.24781 * 18 16 14 33 33 H 1.08997 * 110.52445 * 278.38663 * 19 18 16 34 34 H 1.08999 * 110.77363 * 155.49944 * 19 18 16 35 35 H 1.09007 * 109.88015 * 267.08832 * 21 20 19 36 36 H 1.08999 * 110.00641 * 146.00931 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0101 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2023 -0.0011 10 6 4.1120 -2.4710 0.0044 11 6 5.6162 -2.1915 0.0019 12 6 6.3812 -3.5165 0.0083 13 7 7.8215 -3.2489 0.0065 14 6 8.6973 -4.2733 0.0108 15 8 8.2930 -5.4167 0.0166 16 6 10.1789 -3.9981 0.0084 17 9 10.5023 -3.0731 -0.9902 18 6 10.9737 -5.3114 -0.1915 19 6 12.1556 -5.1267 0.7977 20 8 11.5534 -4.4510 1.9225 21 6 10.6342 -3.4838 1.3879 22 1 -0.4851 0.8401 0.0004 23 1 3.8645 -0.3622 -0.0014 24 1 3.8490 -3.0385 0.8971 25 1 3.8482 -3.0466 -0.8829 26 1 5.8789 -1.6242 -0.8910 27 1 5.8802 -1.6157 0.8890 28 1 6.1184 -4.0834 0.9015 29 1 6.1172 -4.0927 -0.8785 30 1 8.1449 -2.3344 0.0015 31 1 10.3700 -6.1769 0.0814 32 1 11.3322 -5.3967 -1.2174 33 1 12.9348 -4.5091 0.3512 34 1 12.5599 -6.0923 1.1016 35 1 11.1321 -2.5202 1.2784 36 1 9.7731 -3.3828 2.0484 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164566026.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:59 Heat of formation + Delta-G solvation = -118.242299 kcal Electronic energy + Delta-G solvation = -19264.037573 eV Core-core repulsion = 15891.090395 eV Total energy + Delta-G solvation = -3372.947178 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.45478 -40.39171 -38.92545 -36.34823 -34.65119 -32.38674 -31.99064 -30.46129 -29.49454 -25.86144 -24.07278 -23.00396 -22.03405 -21.39273 -20.40227 -18.49949 -17.53523 -17.43733 -16.80532 -16.07697 -15.77937 -15.63180 -15.05343 -14.96745 -14.67324 -14.36181 -14.05550 -13.67921 -13.56480 -12.85878 -12.65729 -12.62210 -12.18841 -12.09887 -12.05442 -11.36142 -11.27712 -11.10252 -10.93612 -10.77033 -10.44071 -10.19921 -10.03432 -9.62763 -9.37123 -8.93985 -7.28524 -5.80016 -3.16582 2.02720 2.59121 3.24823 3.33880 3.36344 3.42363 3.46381 3.74447 4.11563 4.28725 4.47336 4.55608 4.64474 4.80982 4.98220 5.09306 5.10401 5.16939 5.26517 5.39617 5.49916 5.53186 5.68034 5.82745 5.85410 6.04007 6.12278 6.16949 6.61968 6.65101 7.06351 7.70763 7.95680 8.38638 9.17106 9.89131 10.08240 11.38305 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.043765 B = 0.003282 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.627391 B = 8530.130433 C = 8812.793336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.004 3.996 3 Si 0.887 3.113 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.247 4.247 8 H 0.091 0.909 9 N -0.757 5.757 10 C 0.161 3.839 11 C -0.143 4.143 12 C 0.120 3.880 13 N -0.715 5.715 14 C 0.506 3.494 15 O -0.516 6.516 16 C 0.067 3.933 17 F -0.183 7.183 18 C -0.166 4.166 19 C 0.046 3.954 20 O -0.363 6.363 21 C 0.036 3.964 22 H 0.260 0.740 23 H 0.361 0.639 24 H 0.030 0.970 25 H 0.031 0.969 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.405 0.595 31 H 0.116 0.884 32 H 0.101 0.899 33 H 0.068 0.932 34 H 0.106 0.894 35 H 0.087 0.913 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.437 -7.729 0.504 27.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.192 4.192 3 Si 0.717 3.283 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.377 4.377 8 H 0.109 0.891 9 N -0.403 5.403 10 C 0.033 3.967 11 C -0.181 4.181 12 C -0.003 4.003 13 N -0.366 5.366 14 C 0.289 3.711 15 O -0.391 6.391 16 C 0.045 3.955 17 F -0.164 7.164 18 C -0.204 4.204 19 C -0.030 4.030 20 O -0.281 6.281 21 C -0.042 4.042 22 H 0.070 0.930 23 H 0.193 0.807 24 H 0.048 0.952 25 H 0.049 0.951 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.239 0.761 31 H 0.134 0.866 32 H 0.119 0.881 33 H 0.087 0.913 34 H 0.124 0.876 35 H 0.105 0.895 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 25.914 -8.656 0.705 27.330 hybrid contribution 0.610 1.925 -0.394 2.057 sum 26.524 -6.731 0.312 27.367 Atomic orbital electron populations 1.69702 1.05120 1.25897 1.57392 1.24692 0.95273 0.97287 1.01937 0.86514 0.79136 0.84871 0.77765 1.21041 1.21660 1.20395 1.19068 0.80530 0.94851 1.43245 0.89131 1.42681 1.04141 1.02111 1.91323 1.20488 0.87453 0.89603 0.99149 1.22011 0.97279 0.96004 1.02810 1.21466 0.77368 0.98338 1.03133 1.46056 1.07470 1.09335 1.73764 1.20272 0.87402 0.85914 0.77525 1.90745 1.78963 1.20878 1.48554 1.22582 0.94002 0.90321 0.88572 1.92950 1.93611 1.67307 1.62501 1.23757 0.97260 0.96733 1.02667 1.23711 0.94795 0.98424 0.86115 1.88955 1.57270 1.52702 1.29206 1.23752 0.94936 0.93669 0.91826 0.92989 0.80666 0.95172 0.95103 0.91145 0.91187 0.90665 0.90736 0.76069 0.86551 0.88075 0.91328 0.87617 0.89506 0.87822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.37 13.97 55.49 0.78 -28.59 16 2 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 3 Si 0.89 21.88 27.73 -169.99 -4.71 17.17 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.28 -6.37 6.52 56.52 0.37 -6.01 16 7 C -0.25 -7.02 10.47 -15.06 -0.16 -7.18 16 8 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 9 N -0.76 -17.78 5.41 -59.91 -0.32 -18.11 16 10 C 0.16 2.97 6.26 -4.04 -0.03 2.95 16 11 C -0.14 -1.93 5.44 -26.73 -0.15 -2.08 16 12 C 0.12 1.46 5.67 -4.05 -0.02 1.43 16 13 N -0.72 -7.51 5.54 -60.30 -0.33 -7.84 16 14 C 0.51 5.87 6.66 -10.99 -0.07 5.80 16 15 O -0.52 -7.63 15.42 5.56 0.09 -7.54 16 16 C 0.07 0.62 1.55 -90.24 -0.14 0.48 16 17 F -0.18 -1.74 16.82 2.25 0.04 -1.70 16 18 C -0.17 -1.33 6.40 -24.60 -0.16 -1.49 16 19 C 0.05 0.31 7.72 38.34 0.30 0.61 16 20 O -0.36 -3.42 11.52 -35.23 -0.41 -3.83 16 21 C 0.04 0.29 7.22 37.73 0.27 0.57 16 22 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 23 H 0.36 8.15 5.53 -40.82 -0.23 7.93 16 24 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.40 3.36 8.46 -40.82 -0.35 3.02 16 31 H 0.12 1.08 6.80 -51.93 -0.35 0.73 16 32 H 0.10 0.67 8.12 -51.93 -0.42 0.25 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.09 0.57 8.03 -51.93 -0.42 0.15 16 36 H 0.10 0.81 7.69 -51.93 -0.40 0.41 16 LS Contribution 306.19 15.07 4.61 4.61 Total: -1.00 -33.83 306.19 -5.65 -39.48 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -5.13 Total: 5.24 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -0.25 Total: 1.11 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: 0.12 Total: -54.54 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: -0.32 Total: -11.37 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.04 Total: -1.70 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.71 Total: 17.17 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -33.83 -5.65 -39.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164566026.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.759 kcal (2) G-P(sol) polarization free energy of solvation -33.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds