Wall clock time and date at job start Mon Mar 30 2020 00:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86795 * 120.00227 * 2 1 4 4 H 1.48503 * 109.47294 * 270.00278 * 3 2 1 5 5 H 1.48499 * 109.47218 * 30.00138 * 3 2 1 6 6 H 1.48505 * 109.47256 * 150.00144 * 3 2 1 7 7 C 1.38811 * 119.99700 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00547 * 359.97438 * 7 2 1 9 9 N 1.36945 * 120.00031 * 179.97438 * 7 2 1 10 10 C 1.46493 * 119.99892 * 179.72716 * 9 7 2 11 11 C 1.53001 * 109.47086 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.47367 * 179.97438 * 11 10 9 13 13 N 1.46498 * 109.47310 * 180.02562 * 12 11 10 14 14 C 1.34778 * 120.00062 * 180.02562 * 13 12 11 15 15 O 1.21274 * 120.00271 * 359.97438 * 14 13 12 16 16 C 1.50698 * 120.00117 * 179.97438 * 14 13 12 17 17 F 1.39905 * 110.43812 * 310.70246 * 16 14 13 18 18 C 1.54810 * 110.48991 * 188.15523 * 16 14 13 19 19 C 1.55230 * 101.98700 * 220.51740 * 18 16 14 20 20 O 1.44379 * 103.56455 * 36.88350 * 19 18 16 21 21 C 1.43738 * 106.97475 * 320.00857 * 20 19 18 22 22 H 0.97004 * 120.00256 * 359.97438 * 1 2 3 23 23 H 0.97000 * 119.99317 * 359.97438 * 9 7 2 24 24 H 1.08998 * 109.47351 * 299.99725 * 10 9 7 25 25 H 1.09001 * 109.47288 * 59.99879 * 10 9 7 26 26 H 1.08998 * 109.47065 * 300.00224 * 11 10 9 27 27 H 1.09001 * 109.46892 * 59.99959 * 11 10 9 28 28 H 1.09007 * 109.47198 * 299.99944 * 12 11 10 29 29 H 1.08998 * 109.47543 * 59.99686 * 12 11 10 30 30 H 0.96998 * 120.00378 * 359.97438 * 13 12 11 31 31 H 1.09000 * 110.90766 * 338.64226 * 18 16 14 32 32 H 1.09001 * 110.90630 * 102.24781 * 18 16 14 33 33 H 1.08997 * 110.52445 * 278.38663 * 19 18 16 34 34 H 1.08999 * 110.77363 * 155.49944 * 19 18 16 35 35 H 1.09007 * 109.88015 * 267.08832 * 21 20 19 36 36 H 1.08999 * 110.00641 * 146.00931 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0101 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2023 -0.0011 10 6 4.1120 -2.4710 0.0044 11 6 5.6162 -2.1915 0.0019 12 6 6.3812 -3.5165 0.0083 13 7 7.8215 -3.2489 0.0065 14 6 8.6973 -4.2733 0.0108 15 8 8.2930 -5.4167 0.0166 16 6 10.1789 -3.9981 0.0084 17 9 10.5023 -3.0731 -0.9902 18 6 10.9737 -5.3114 -0.1915 19 6 12.1556 -5.1267 0.7977 20 8 11.5534 -4.4510 1.9225 21 6 10.6342 -3.4838 1.3879 22 1 -0.4851 0.8401 0.0004 23 1 3.8645 -0.3622 -0.0014 24 1 3.8490 -3.0385 0.8971 25 1 3.8482 -3.0466 -0.8829 26 1 5.8789 -1.6242 -0.8910 27 1 5.8802 -1.6157 0.8890 28 1 6.1184 -4.0834 0.9015 29 1 6.1172 -4.0927 -0.8785 30 1 8.1449 -2.3344 0.0015 31 1 10.3700 -6.1769 0.0814 32 1 11.3322 -5.3967 -1.2174 33 1 12.9348 -4.5091 0.3512 34 1 12.5599 -6.0923 1.1016 35 1 11.1321 -2.5202 1.2784 36 1 9.7731 -3.3828 2.0484 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164566026.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:59 Heat of formation + Delta-G solvation = -144.619092 kcal Electronic energy + Delta-G solvation = -19265.181356 eV Core-core repulsion = 15891.090395 eV Total energy + Delta-G solvation = -3374.090961 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.132 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.17483 -41.23297 -39.64990 -37.70261 -36.11972 -33.96606 -32.94820 -31.87691 -30.32519 -27.28610 -25.04331 -24.09792 -23.18043 -22.75287 -21.32116 -19.77083 -19.10355 -18.14498 -17.63354 -16.98156 -16.80532 -16.54295 -16.23100 -15.82525 -15.76335 -15.64480 -15.26864 -14.90257 -14.80889 -14.22358 -13.92926 -13.81178 -13.34496 -12.89640 -12.80659 -12.66767 -12.58875 -12.53367 -12.13907 -12.03142 -11.97817 -11.81971 -11.22520 -10.99023 -10.79645 -10.32039 -9.33168 -8.04254 -5.39476 1.13755 1.38042 1.43310 1.50634 1.72504 2.48442 2.66059 2.77064 3.08898 3.27042 3.35617 3.51731 3.67610 3.88156 4.03373 4.12789 4.19146 4.20680 4.41608 4.54742 4.65061 4.66428 4.68263 4.73048 4.83307 4.91989 5.14087 5.25523 5.26993 5.59720 5.73641 6.19317 6.21519 6.85414 7.06235 7.80707 8.01162 9.17283 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.043765 B = 0.003282 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.627391 B = 8530.130433 C = 8812.793336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.067 4.067 3 Si 0.963 3.037 4 H -0.277 1.277 5 H -0.296 1.296 6 H -0.245 1.245 7 C -0.243 4.243 8 H 0.053 0.947 9 N -0.759 5.759 10 C 0.154 3.846 11 C -0.124 4.124 12 C 0.128 3.872 13 N -0.705 5.705 14 C 0.504 3.496 15 O -0.553 6.553 16 C 0.072 3.928 17 F -0.183 7.183 18 C -0.168 4.168 19 C 0.046 3.954 20 O -0.384 6.384 21 C 0.037 3.963 22 H 0.259 0.741 23 H 0.369 0.631 24 H 0.026 0.974 25 H 0.026 0.974 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.418 0.582 31 H 0.100 0.900 32 H 0.114 0.886 33 H 0.086 0.914 34 H 0.121 0.879 35 H 0.107 0.893 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.489 -6.476 0.537 30.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.259 4.259 3 Si 0.789 3.211 4 H -0.203 1.203 5 H -0.223 1.223 6 H -0.169 1.169 7 C -0.374 4.374 8 H 0.071 0.929 9 N -0.405 5.405 10 C 0.027 3.973 11 C -0.162 4.162 12 C 0.004 3.996 13 N -0.357 5.357 14 C 0.287 3.713 15 O -0.431 6.431 16 C 0.050 3.950 17 F -0.163 7.163 18 C -0.206 4.206 19 C -0.029 4.029 20 O -0.303 6.303 21 C -0.041 4.041 22 H 0.068 0.932 23 H 0.202 0.798 24 H 0.044 0.956 25 H 0.044 0.956 26 H 0.101 0.899 27 H 0.103 0.897 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.255 0.745 31 H 0.118 0.882 32 H 0.132 0.868 33 H 0.104 0.896 34 H 0.139 0.861 35 H 0.125 0.875 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 29.032 -7.407 0.738 29.971 hybrid contribution -0.378 1.405 -0.423 1.515 sum 28.654 -6.002 0.315 29.277 Atomic orbital electron populations 1.69902 1.07368 1.26911 1.59377 1.25628 0.96233 1.01737 1.02263 0.85303 0.78761 0.78830 0.78225 1.20254 1.22285 1.16947 1.19050 0.82840 0.93537 1.41926 0.92865 1.42657 1.02475 1.04240 1.91131 1.20654 0.90458 0.87570 0.98592 1.21778 0.93478 0.96840 1.04115 1.21228 0.78303 0.97396 1.02637 1.45919 1.06623 1.10024 1.73091 1.20725 0.88555 0.85399 0.76595 1.90733 1.79796 1.22354 1.50237 1.22530 0.92153 0.91024 0.89321 1.92953 1.93431 1.67323 1.62614 1.23779 0.97434 0.95479 1.03865 1.23889 0.94421 0.99456 0.85168 1.88931 1.57647 1.53227 1.30533 1.23826 0.95141 0.94209 0.90881 0.93228 0.79756 0.95566 0.95616 0.89935 0.89737 0.91139 0.91524 0.74488 0.88197 0.86805 0.89557 0.86097 0.87521 0.87756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.45 13.97 21.65 0.30 -63.14 16 2 C -0.07 -3.96 5.50 84.86 0.47 -3.50 16 3 Si 0.96 44.45 27.73 68.60 1.90 46.35 16 4 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 6 H -0.25 -9.91 6.52 99.48 0.65 -9.26 16 7 C -0.24 -13.92 10.47 84.03 0.88 -13.04 16 8 H 0.05 3.37 8.06 -2.91 -0.02 3.35 16 9 N -0.76 -34.62 5.41 -343.46 -1.86 -36.48 16 10 C 0.15 5.52 6.26 86.38 0.54 6.06 16 11 C -0.12 -3.03 5.44 30.59 0.17 -2.86 16 12 C 0.13 2.90 5.67 86.38 0.49 3.39 16 13 N -0.71 -13.29 5.54 -463.08 -2.56 -15.85 16 14 C 0.50 10.99 6.66 87.66 0.58 11.57 16 15 O -0.55 -16.14 15.42 -3.01 -0.05 -16.19 16 16 C 0.07 1.17 1.55 -10.55 -0.02 1.16 16 17 F -0.18 -2.99 16.82 44.97 0.76 -2.23 16 18 C -0.17 -2.42 6.40 31.98 0.20 -2.21 16 19 C 0.05 0.53 7.72 72.75 0.56 1.09 16 20 O -0.38 -6.48 11.52 -148.98 -1.72 -8.20 16 21 C 0.04 0.52 7.22 72.36 0.52 1.04 16 22 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 23 H 0.37 15.55 5.53 -92.71 -0.51 15.03 16 24 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.08 1.87 8.14 -2.39 -0.02 1.86 16 28 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 29 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.42 5.67 8.46 -92.71 -0.78 4.88 16 31 H 0.10 1.81 6.80 -2.39 -0.02 1.79 16 32 H 0.11 1.31 8.12 -2.39 -0.02 1.29 16 33 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.11 1.06 8.03 -2.38 -0.02 1.04 16 36 H 0.10 1.41 7.69 -2.39 -0.02 1.39 16 Total: -1.00 -73.83 306.19 0.92 -72.91 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: -0.26 Total: 20.15 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: 4.40 Total: 2.69 kcal Atomic # 7 Polarization: -111.35 SS G_CDS: -4.12 Total: -115.47 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: -1.76 Total: -24.39 kcal Atomic # 9 Polarization: -2.99 SS G_CDS: 0.76 Total: -2.23 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.90 Total: 46.35 kcal Total: -73.83 0.92 -72.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164566026.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.714 kcal (2) G-P(sol) polarization free energy of solvation -73.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds