Wall clock time and date at job start Mon Mar 30 2020 00:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.46928 * 2 1 4 4 C 1.36935 * 119.99813 * 82.96419 * 3 2 1 5 5 H 1.07995 * 120.00514 * 170.97396 * 4 3 2 6 6 C 1.38817 * 119.99554 * 350.96919 * 4 3 2 7 7 N 1.31611 * 120.00531 * 1.74055 * 6 4 3 8 8 Si 1.86809 * 119.99767 * 181.73645 * 6 4 3 9 9 H 1.48502 * 109.46830 * 0.02562 * 8 6 4 10 10 H 1.48495 * 109.47056 * 119.99798 * 8 6 4 11 11 H 1.48501 * 109.47185 * 240.00163 * 8 6 4 12 12 C 1.46497 * 120.00018 * 262.95961 * 3 2 1 13 13 C 1.53000 * 109.47348 * 273.09953 * 12 3 2 14 14 O 1.42894 * 109.47007 * 66.68280 * 13 12 3 15 15 C 1.35759 * 116.99895 * 179.97438 * 14 13 12 16 16 C 1.38958 * 119.90734 * 180.02562 * 15 14 13 17 17 C 1.37735 * 120.09984 * 180.02562 * 16 15 14 18 18 C 1.39759 * 119.90038 * 359.97438 * 17 16 15 19 19 C 1.43199 * 120.09290 * 179.97438 * 18 17 16 20 20 N 9.42317 * 156.42864 * 239.22933 * 2 1 3 21 21 C 1.39759 * 119.81374 * 0.24566 * 18 17 16 22 22 C 1.37737 * 119.90228 * 359.51628 * 21 18 17 23 23 H 1.09003 * 109.47029 * 306.83806 * 1 2 3 24 24 H 1.08999 * 109.47813 * 66.84737 * 1 2 3 25 25 H 1.09009 * 109.47003 * 186.84707 * 1 2 3 26 26 H 1.09003 * 109.47127 * 240.00558 * 2 1 3 27 27 H 1.08999 * 109.47680 * 120.00786 * 2 1 3 28 28 H 0.96999 * 120.00227 * 180.02562 * 7 6 4 29 29 H 1.09009 * 109.46702 * 153.10033 * 12 3 2 30 30 H 1.09000 * 109.47221 * 33.10309 * 12 3 2 31 31 H 1.09007 * 109.47129 * 306.68344 * 13 12 3 32 32 H 1.08994 * 109.46942 * 186.69096 * 13 12 3 33 33 H 1.08001 * 119.95245 * 0.03100 * 16 15 14 34 34 H 1.07992 * 120.05071 * 179.97438 * 17 16 15 35 35 H 1.07995 * 120.04656 * 179.75267 * 21 18 17 36 36 H 1.07998 * 119.95289 * 180.22516 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1095 2.0752 1.1770 5 1 2.6027 3.0356 1.2008 6 6 1.5679 1.5440 2.3395 7 7 0.9970 0.3584 2.3177 8 14 1.6495 2.5121 3.9351 9 1 2.3366 3.8064 3.6941 10 1 0.2729 2.7677 4.4299 11 1 2.4033 1.7322 4.9494 12 6 2.4090 2.0200 -1.2591 13 6 3.8748 1.7007 -1.5597 14 8 4.0131 0.3035 -1.8254 15 6 5.2605 -0.1487 -2.1130 16 6 5.4639 -1.4968 -2.3817 17 6 6.7278 -1.9599 -2.6734 18 6 7.8065 -1.0716 -2.6996 19 6 9.1224 -1.5487 -3.0019 20 7 10.1669 -1.9278 -3.2378 21 6 7.5982 0.2827 -2.4242 22 6 6.3302 0.7381 -2.1382 23 1 -0.3633 0.6162 0.8225 24 1 -0.3635 0.4040 -0.9448 25 1 -0.3633 -1.0204 0.1225 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 0.6182 -0.0126 3.1300 29 1 2.2824 3.0994 -1.1735 30 1 1.7820 1.6437 -2.0674 31 1 4.4889 1.9696 -0.7001 32 1 4.1995 2.2701 -2.4305 33 1 4.6297 -2.1824 -2.3618 34 1 6.8851 -3.0078 -2.8817 35 1 8.4297 0.9717 -2.4395 36 1 6.1677 1.7851 -1.9289 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068959192.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:01 Heat of formation + Delta-G solvation = 50.589432 kcal Electronic energy + Delta-G solvation = -18716.215580 eV Core-core repulsion = 15781.358720 eV Total energy + Delta-G solvation = -2934.856860 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.09130 -37.92066 -36.29547 -35.72058 -31.94950 -31.22245 -30.34061 -29.64059 -27.72425 -24.32363 -23.37158 -23.03397 -21.62682 -19.95861 -18.91938 -17.99656 -16.65351 -15.86526 -15.79064 -14.84156 -14.73044 -14.10097 -13.98879 -13.67397 -13.52745 -13.45233 -13.28673 -12.62884 -12.48371 -12.25179 -12.04738 -11.72273 -11.35095 -11.20259 -10.97331 -10.74579 -10.63636 -10.48555 -10.37856 -9.85378 -9.60284 -9.43940 -9.18553 -8.33210 -8.13687 -6.84791 -5.60751 -3.13383 0.85334 1.24868 2.62671 2.93698 3.35690 3.42316 3.44497 3.47169 3.84453 3.91336 4.45692 4.70152 4.77291 5.09904 5.28623 5.35190 5.39448 5.49033 5.63375 5.84251 5.91400 5.91972 5.98825 6.23956 6.29807 6.30460 6.56913 6.61933 6.77589 7.10854 7.20089 7.36876 7.45076 7.61281 7.65224 7.99578 8.21944 8.48791 9.28868 9.87988 10.30874 11.29541 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.026852 B = 0.004392 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.517066 B = 6373.145690 C = 6670.107616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.171 3.829 3 N -0.599 5.599 4 C -0.246 4.246 5 H 0.072 0.928 6 C -0.007 4.007 7 N -0.904 5.904 8 Si 0.907 3.093 9 H -0.281 1.281 10 H -0.291 1.291 11 H -0.291 1.291 12 C 0.151 3.849 13 C 0.032 3.968 14 O -0.287 6.287 15 C 0.180 3.820 16 C -0.161 4.161 17 C -0.029 4.029 18 C -0.094 4.094 19 C 0.267 3.733 20 N -0.441 5.441 21 C -0.026 4.026 22 C -0.218 4.218 23 H 0.082 0.918 24 H -0.004 1.004 25 H 0.019 0.981 26 H 0.007 0.993 27 H 0.098 0.902 28 H 0.248 0.752 29 H 0.071 0.929 30 H 0.048 0.952 31 H 0.065 0.935 32 H 0.049 0.951 33 H 0.141 0.859 34 H 0.135 0.865 35 H 0.130 0.870 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.773 -0.143 -9.466 11.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.047 3.953 3 N -0.320 5.320 4 C -0.375 4.375 5 H 0.090 0.910 6 C -0.203 4.203 7 N -0.552 5.552 8 Si 0.738 3.262 9 H -0.207 1.207 10 H -0.218 1.218 11 H -0.218 1.218 12 C 0.022 3.978 13 C -0.046 4.046 14 O -0.198 6.198 15 C 0.130 3.870 16 C -0.180 4.180 17 C -0.049 4.049 18 C -0.098 4.098 19 C -0.047 4.047 20 N -0.117 5.117 21 C -0.046 4.046 22 C -0.237 4.237 23 H 0.101 0.899 24 H 0.015 0.985 25 H 0.038 0.962 26 H 0.025 0.975 27 H 0.115 0.885 28 H 0.059 0.941 29 H 0.089 0.911 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.159 0.841 34 H 0.153 0.847 35 H 0.148 0.852 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 8.091 -0.898 -9.640 12.617 hybrid contribution -0.267 0.882 1.029 1.381 sum 7.824 -0.016 -8.611 11.635 Atomic orbital electron populations 1.22385 0.99568 0.98898 0.98477 1.21000 0.92010 0.83730 0.98587 1.44190 1.74913 1.11695 1.01189 1.19381 1.30437 1.01447 0.86224 0.90964 1.24831 0.99940 0.97340 0.98184 1.70270 1.42814 1.16239 1.25872 0.86123 0.77213 0.79015 0.83814 1.20668 1.21778 1.21846 1.20824 0.89757 0.97161 0.90082 1.24220 1.03872 0.77646 0.98879 1.86253 1.24204 1.28066 1.81271 1.19553 0.85137 0.93120 0.89158 1.20402 0.97740 0.93464 1.06367 1.20899 0.90506 0.99029 0.94474 1.15843 0.86388 0.94321 1.13229 1.25729 0.92729 0.93326 0.92896 1.81226 1.11519 1.08229 1.10698 1.20888 0.96884 0.93270 0.93596 1.21252 0.92484 1.00793 1.09145 0.89915 0.98459 0.96209 0.97459 0.88465 0.94086 0.91090 0.93384 0.91634 0.93283 0.84103 0.84732 0.85190 0.84420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.15 9.28 37.16 0.34 -2.80 16 2 C 0.17 4.08 5.48 -4.04 -0.02 4.05 16 3 N -0.60 -13.98 2.53 -173.23 -0.44 -14.42 16 4 C -0.25 -6.27 9.76 -15.06 -0.15 -6.42 16 5 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 6 C -0.01 -0.19 5.18 -17.43 -0.09 -0.28 16 7 N -0.90 -24.51 7.30 55.49 0.40 -24.11 16 8 Si 0.91 21.00 29.55 -169.99 -5.02 15.97 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 C 0.15 2.76 6.06 -4.04 -0.02 2.74 16 13 C 0.03 0.49 5.07 37.16 0.19 0.68 16 14 O -0.29 -4.73 8.86 -18.99 -0.17 -4.90 16 15 C 0.18 2.47 6.69 -39.04 -0.26 2.21 16 16 C -0.16 -1.94 9.97 -39.50 -0.39 -2.33 16 17 C -0.03 -0.30 9.75 -39.20 -0.38 -0.68 16 18 C -0.09 -1.03 5.74 -106.83 -0.61 -1.64 16 19 C 0.27 3.25 15.33 -22.47 -0.34 2.91 16 20 N -0.44 -6.24 18.54 41.84 0.78 -5.47 16 21 C -0.03 -0.27 9.75 -39.20 -0.38 -0.65 16 22 C -0.22 -2.57 9.01 -39.49 -0.36 -2.93 16 23 H 0.08 2.18 6.07 -51.93 -0.32 1.87 16 24 H 0.00 -0.08 8.14 -51.93 -0.42 -0.50 16 25 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 26 H 0.01 0.16 7.01 -51.93 -0.36 -0.20 16 27 H 0.10 2.62 5.91 -51.93 -0.31 2.32 16 28 H 0.25 6.62 8.31 -40.82 -0.34 6.28 16 29 H 0.07 1.21 8.01 -51.92 -0.42 0.80 16 30 H 0.05 0.85 8.10 -51.93 -0.42 0.43 16 31 H 0.07 1.08 7.65 -51.93 -0.40 0.68 16 32 H 0.05 0.60 7.65 -51.93 -0.40 0.21 16 33 H 0.14 1.59 8.06 -52.49 -0.42 1.16 16 34 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 36 H 0.14 1.47 6.27 -52.49 -0.33 1.14 16 LS Contribution 308.46 15.07 4.65 4.65 Total: -1.00 -28.49 308.46 -6.89 -35.38 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: -4.61 Total: -1.98 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: -2.48 Total: -5.14 kcal Atomic # 7 Polarization: -44.74 SS G_CDS: 0.74 Total: -44.00 kcal Atomic # 8 Polarization: -4.73 SS G_CDS: -0.17 Total: -4.90 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -28.49 -6.89 -35.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068959192.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.973 kcal (2) G-P(sol) polarization free energy of solvation -28.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds