Wall clock time and date at job start Mon Mar 30 2020 00:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.46928 * 2 1 4 4 C 1.36935 * 119.99813 * 82.96419 * 3 2 1 5 5 H 1.07995 * 120.00514 * 170.97396 * 4 3 2 6 6 C 1.38817 * 119.99554 * 350.96919 * 4 3 2 7 7 N 1.31611 * 120.00531 * 1.74055 * 6 4 3 8 8 Si 1.86809 * 119.99767 * 181.73645 * 6 4 3 9 9 H 1.48502 * 109.46830 * 0.02562 * 8 6 4 10 10 H 1.48495 * 109.47056 * 119.99798 * 8 6 4 11 11 H 1.48501 * 109.47185 * 240.00163 * 8 6 4 12 12 C 1.46497 * 120.00018 * 262.95961 * 3 2 1 13 13 C 1.53000 * 109.47348 * 273.09953 * 12 3 2 14 14 O 1.42894 * 109.47007 * 66.68280 * 13 12 3 15 15 C 1.35759 * 116.99895 * 179.97438 * 14 13 12 16 16 C 1.38958 * 119.90734 * 180.02562 * 15 14 13 17 17 C 1.37735 * 120.09984 * 180.02562 * 16 15 14 18 18 C 1.39759 * 119.90038 * 359.97438 * 17 16 15 19 19 C 1.43199 * 120.09290 * 179.97438 * 18 17 16 20 20 N 9.42317 * 156.42864 * 239.22933 * 2 1 3 21 21 C 1.39759 * 119.81374 * 0.24566 * 18 17 16 22 22 C 1.37737 * 119.90228 * 359.51628 * 21 18 17 23 23 H 1.09003 * 109.47029 * 306.83806 * 1 2 3 24 24 H 1.08999 * 109.47813 * 66.84737 * 1 2 3 25 25 H 1.09009 * 109.47003 * 186.84707 * 1 2 3 26 26 H 1.09003 * 109.47127 * 240.00558 * 2 1 3 27 27 H 1.08999 * 109.47680 * 120.00786 * 2 1 3 28 28 H 0.96999 * 120.00227 * 180.02562 * 7 6 4 29 29 H 1.09009 * 109.46702 * 153.10033 * 12 3 2 30 30 H 1.09000 * 109.47221 * 33.10309 * 12 3 2 31 31 H 1.09007 * 109.47129 * 306.68344 * 13 12 3 32 32 H 1.08994 * 109.46942 * 186.69096 * 13 12 3 33 33 H 1.08001 * 119.95245 * 0.03100 * 16 15 14 34 34 H 1.07992 * 120.05071 * 179.97438 * 17 16 15 35 35 H 1.07995 * 120.04656 * 179.75267 * 21 18 17 36 36 H 1.07998 * 119.95289 * 180.22516 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1095 2.0752 1.1770 5 1 2.6027 3.0356 1.2008 6 6 1.5679 1.5440 2.3395 7 7 0.9970 0.3584 2.3177 8 14 1.6495 2.5121 3.9351 9 1 2.3366 3.8064 3.6941 10 1 0.2729 2.7677 4.4299 11 1 2.4033 1.7322 4.9494 12 6 2.4090 2.0200 -1.2591 13 6 3.8748 1.7007 -1.5597 14 8 4.0131 0.3035 -1.8254 15 6 5.2605 -0.1487 -2.1130 16 6 5.4639 -1.4968 -2.3817 17 6 6.7278 -1.9599 -2.6734 18 6 7.8065 -1.0716 -2.6996 19 6 9.1224 -1.5487 -3.0019 20 7 10.1669 -1.9278 -3.2378 21 6 7.5982 0.2827 -2.4242 22 6 6.3302 0.7381 -2.1382 23 1 -0.3633 0.6162 0.8225 24 1 -0.3635 0.4040 -0.9448 25 1 -0.3633 -1.0204 0.1225 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 0.6182 -0.0126 3.1300 29 1 2.2824 3.0994 -1.1735 30 1 1.7820 1.6437 -2.0674 31 1 4.4889 1.9696 -0.7001 32 1 4.1995 2.2701 -2.4305 33 1 4.6297 -2.1824 -2.3618 34 1 6.8851 -3.0078 -2.8817 35 1 8.4297 0.9717 -2.4395 36 1 6.1677 1.7851 -1.9289 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068959192.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:01 Heat of formation + Delta-G solvation = 36.468443 kcal Electronic energy + Delta-G solvation = -18716.827912 eV Core-core repulsion = 15781.358720 eV Total energy + Delta-G solvation = -2935.469192 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.09619 -39.01792 -37.74598 -37.01419 -33.58160 -32.20242 -31.70266 -31.10106 -29.32639 -25.96140 -24.59745 -24.14557 -22.98899 -21.64945 -19.83508 -19.14959 -18.40816 -17.26428 -16.93743 -16.40493 -15.61773 -15.43380 -15.20729 -14.94657 -14.85821 -14.66021 -14.44530 -14.07102 -13.72422 -13.61541 -13.20849 -13.06412 -12.96470 -12.74204 -12.64598 -12.36110 -12.24393 -11.89201 -11.78041 -11.54844 -11.43071 -11.28293 -10.27321 -10.04273 -9.14002 -8.70382 -7.56852 -5.08495 -0.08146 0.38938 1.51704 1.54108 1.61665 1.65877 1.97451 2.38992 2.58516 2.93136 2.96580 3.43897 3.75004 3.85007 3.94270 4.21203 4.36107 4.48389 4.54799 4.56902 4.63571 4.88353 4.92875 5.03734 5.12823 5.13951 5.24830 5.33960 5.35692 5.40367 5.48375 5.66066 5.70710 6.03867 6.28086 6.48840 6.53754 6.57748 7.33225 8.03556 8.42325 9.32212 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.026852 B = 0.004392 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.517066 B = 6373.145690 C = 6670.107616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.180 3.820 3 N -0.615 5.615 4 C -0.246 4.246 5 H 0.080 0.920 6 C -0.060 4.060 7 N -0.926 5.926 8 Si 0.963 3.037 9 H -0.269 1.269 10 H -0.299 1.299 11 H -0.300 1.300 12 C 0.144 3.856 13 C 0.043 3.957 14 O -0.314 6.314 15 C 0.155 3.845 16 C -0.170 4.170 17 C -0.019 4.019 18 C -0.094 4.094 19 C 0.289 3.711 20 N -0.476 5.476 21 C -0.019 4.019 22 C -0.219 4.219 23 H 0.052 0.948 24 H 0.010 0.990 25 H 0.024 0.976 26 H 0.020 0.980 27 H 0.063 0.937 28 H 0.239 0.761 29 H 0.083 0.917 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.087 0.913 33 H 0.143 0.857 34 H 0.159 0.841 35 H 0.154 0.846 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.923 0.642 -10.565 13.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.056 3.944 3 N -0.337 5.337 4 C -0.376 4.376 5 H 0.098 0.902 6 C -0.254 4.254 7 N -0.576 5.576 8 Si 0.794 3.206 9 H -0.193 1.193 10 H -0.226 1.226 11 H -0.228 1.228 12 C 0.018 3.982 13 C -0.035 4.035 14 O -0.227 6.227 15 C 0.107 3.893 16 C -0.188 4.188 17 C -0.039 4.039 18 C -0.098 4.098 19 C -0.024 4.024 20 N -0.152 5.152 21 C -0.039 4.039 22 C -0.237 4.237 23 H 0.071 0.929 24 H 0.029 0.971 25 H 0.043 0.957 26 H 0.038 0.962 27 H 0.081 0.919 28 H 0.049 0.951 29 H 0.101 0.899 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.105 0.895 33 H 0.161 0.839 34 H 0.176 0.824 35 H 0.172 0.828 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 9.270 -0.089 -10.780 14.218 hybrid contribution -0.569 0.617 1.273 1.525 sum 8.701 0.528 -9.507 12.899 Atomic orbital electron populations 1.22209 0.99461 0.98653 0.97774 1.20718 0.92000 0.84306 0.97413 1.44342 1.75445 1.11538 1.02383 1.19709 1.29257 1.01540 0.87099 0.90200 1.25473 1.00782 0.98320 1.00777 1.70476 1.43998 1.17382 1.25694 0.85236 0.76461 0.78301 0.80624 1.19309 1.22622 1.22760 1.21054 0.91532 0.97637 0.88024 1.23880 1.01229 0.78245 1.00097 1.86175 1.25977 1.28270 1.82239 1.19823 0.84729 0.94110 0.90654 1.20540 0.98530 0.93108 1.06642 1.21109 0.89560 1.00162 0.93074 1.15929 0.85868 0.94762 1.13243 1.25759 0.92482 0.92344 0.91860 1.81260 1.12603 1.09380 1.12000 1.21126 0.97122 0.93429 0.92223 1.21376 0.92342 1.01118 1.08902 0.92921 0.97138 0.95666 0.96176 0.91902 0.95080 0.89870 0.92784 0.92795 0.89494 0.83883 0.82387 0.82797 0.83318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.72 9.28 71.98 0.67 -5.05 16 2 C 0.18 8.63 5.48 86.38 0.47 9.11 16 3 N -0.61 -28.38 2.53 -701.99 -1.78 -30.16 16 4 C -0.25 -12.46 9.76 84.04 0.82 -11.64 16 5 H 0.08 3.83 7.83 -2.91 -0.02 3.81 16 6 C -0.06 -3.19 5.18 84.86 0.44 -2.75 16 7 N -0.93 -51.35 7.30 21.65 0.16 -51.19 16 8 Si 0.96 43.50 29.55 68.60 2.03 45.53 16 9 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 10 H -0.30 -13.74 7.11 99.48 0.71 -13.04 16 11 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 12 C 0.14 5.05 6.06 86.38 0.52 5.57 16 13 C 0.04 1.24 5.07 71.98 0.36 1.60 16 14 O -0.31 -9.93 8.86 -90.85 -0.80 -10.74 16 15 C 0.15 4.01 6.69 22.62 0.15 4.16 16 16 C -0.17 -3.81 9.97 22.32 0.22 -3.59 16 17 C -0.02 -0.35 9.75 22.52 0.22 -0.13 16 18 C -0.09 -1.81 5.74 -21.30 -0.12 -1.94 16 19 C 0.29 6.39 15.33 88.33 1.35 7.75 16 20 N -0.48 -12.72 18.54 19.00 0.35 -12.36 16 21 C -0.02 -0.34 9.75 22.52 0.22 -0.12 16 22 C -0.22 -4.62 9.01 22.33 0.20 -4.42 16 23 H 0.05 2.81 6.07 -2.39 -0.01 2.80 16 24 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 25 H 0.02 1.10 8.14 -2.38 -0.02 1.08 16 26 H 0.02 0.89 7.01 -2.39 -0.02 0.88 16 27 H 0.06 3.47 5.91 -2.39 -0.01 3.46 16 28 H 0.24 13.14 8.31 -92.71 -0.77 12.37 16 29 H 0.08 2.67 8.01 -2.38 -0.02 2.65 16 30 H 0.05 1.82 8.10 -2.39 -0.02 1.80 16 31 H 0.05 1.68 7.65 -2.38 -0.02 1.66 16 32 H 0.09 1.85 7.65 -2.39 -0.02 1.84 16 33 H 0.14 3.08 8.06 -2.91 -0.02 3.06 16 34 H 0.16 2.12 8.06 -2.91 -0.02 2.09 16 35 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 36 H 0.15 2.75 6.27 -2.91 -0.02 2.74 16 Total: -1.00 -61.17 308.46 6.57 -54.60 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: 1.08 Total: 5.76 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: 5.54 Total: -1.45 kcal Atomic # 7 Polarization: -92.44 SS G_CDS: -1.27 Total: -93.71 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: -0.80 Total: -10.74 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -61.17 6.57 -54.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068959192.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.068 kcal (2) G-P(sol) polarization free energy of solvation -61.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds