Wall clock time and date at job start Mon Mar 30 2020 00:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.46984 * 2 1 4 4 C 1.50696 * 109.47094 * 119.99840 * 2 1 3 5 5 H 1.07999 * 120.00001 * 120.00227 * 4 2 1 6 6 C 1.37881 * 120.00259 * 299.99820 * 4 2 1 7 7 N 1.31516 * 119.99852 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00342 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47147 * 90.00244 * 8 6 4 10 10 H 1.48503 * 109.47348 * 210.00592 * 8 6 4 11 11 H 1.48504 * 109.47053 * 330.00664 * 8 6 4 12 12 N 1.46894 * 109.47503 * 239.99993 * 2 1 3 13 13 C 1.46904 * 111.00319 * 84.99744 * 12 2 1 14 14 H 1.09003 * 109.46970 * 325.00352 * 13 12 2 15 15 C 1.53005 * 109.47042 * 85.00013 * 13 12 2 16 16 C 1.50690 * 109.47390 * 205.00417 * 13 12 2 17 17 N 1.29911 * 124.85569 * 135.00092 * 16 13 12 18 18 C 1.36060 * 108.79979 * 180.02562 * 17 16 13 19 19 C 1.39586 * 133.80922 * 180.02562 * 18 17 16 20 20 C 1.37686 * 119.73307 * 179.97438 * 19 18 17 21 21 C 1.38720 * 120.41856 * 359.97438 * 20 19 18 22 22 C 1.37906 * 120.47863 * 359.79462 * 21 20 19 23 23 C 1.38665 * 119.87207 * 0.41473 * 22 21 20 24 24 O 1.34228 * 124.85638 * 315.04954 * 16 13 12 25 25 H 1.08996 * 109.47197 * 299.99951 * 1 2 3 26 26 H 1.09006 * 109.46865 * 60.00060 * 1 2 3 27 27 H 1.08999 * 109.46700 * 179.97438 * 1 2 3 28 28 H 0.97000 * 120.00117 * 179.97438 * 7 6 4 29 29 H 1.00898 * 110.99791 * 321.04936 * 12 2 1 30 30 H 1.08997 * 109.47185 * 300.00451 * 15 13 12 31 31 H 1.09003 * 109.46961 * 60.00333 * 15 13 12 32 32 H 1.08998 * 109.47055 * 180.02562 * 15 13 12 33 33 H 1.08003 * 120.13412 * 359.93491 * 19 18 17 34 34 H 1.07995 * 119.78840 * 179.97438 * 20 19 18 35 35 H 1.08004 * 119.75963 * 180.02562 * 21 20 19 36 36 H 1.07999 * 120.06413 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1202 4.0080 9 1 3.6296 -0.5457 4.4124 10 1 1.3430 -0.9491 5.1120 11 1 2.4859 -2.5661 3.7120 12 7 2.0197 -0.6924 -1.1994 13 6 2.0825 0.2226 -2.3469 14 1 1.2576 0.9329 -2.2907 15 6 3.4112 0.9810 -2.3223 16 6 1.9787 -0.5676 -3.6258 17 7 1.2299 -0.2471 -4.6379 18 6 1.3856 -1.1836 -5.6125 19 6 0.8440 -1.3499 -6.8882 20 6 1.2141 -2.4347 -7.6511 21 6 2.1215 -3.3620 -7.1600 22 6 2.6682 -3.2079 -5.9033 23 6 2.3034 -2.1236 -5.1197 24 8 2.6459 -1.7038 -3.8818 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.7082 1.1610 3.4844 29 1 1.4496 -1.4978 -1.4100 30 1 3.4863 1.5525 -1.3973 31 1 4.2361 0.2706 -2.3785 32 1 3.4576 1.6602 -3.1735 33 1 0.1370 -0.6309 -7.2750 34 1 0.7953 -2.5645 -8.6380 35 1 2.4046 -4.2088 -7.7677 36 1 3.3744 -3.9336 -5.5278 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602867197.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:55 Heat of formation + Delta-G solvation = 37.277274 kcal Electronic energy + Delta-G solvation = -18881.243370 eV Core-core repulsion = 15945.809252 eV Total energy + Delta-G solvation = -2935.434118 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.15193 -38.13816 -36.71910 -34.63337 -33.19215 -30.85676 -30.71599 -29.09063 -27.17638 -25.21521 -24.24096 -23.08700 -21.94134 -20.88921 -19.93608 -17.92829 -17.24778 -16.65754 -16.55102 -15.57724 -14.93653 -14.71021 -14.15434 -14.11551 -13.75083 -13.20222 -12.72843 -12.48258 -12.39459 -12.06912 -11.78806 -11.57883 -11.53353 -11.35972 -11.20423 -10.94734 -10.74444 -10.56290 -10.39854 -10.16848 -9.94976 -9.08275 -8.86402 -8.45595 -8.39654 -7.49149 -6.02556 -4.05948 0.66239 1.16270 2.47195 2.60548 3.31886 3.38168 3.42353 3.58384 3.79724 4.41552 4.48792 4.73738 4.93115 5.04260 5.07817 5.22155 5.29461 5.33016 5.56286 5.62864 5.81791 5.97665 6.10374 6.16540 6.20410 6.25869 6.29130 6.55007 6.60496 6.62620 6.77614 6.99867 7.18479 7.66641 7.72652 7.81500 8.15677 8.33576 8.48083 9.00620 9.59291 11.04656 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.037958 B = 0.004225 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.489838 B = 6625.009052 C = 6848.208629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.211 3.789 3 H 0.041 0.959 4 C -0.496 4.496 5 H 0.064 0.936 6 C 0.057 3.943 7 N -0.896 5.896 8 Si 0.899 3.101 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.672 5.672 13 C 0.170 3.830 14 H 0.085 0.915 15 C -0.136 4.136 16 C 0.274 3.726 17 N -0.491 5.491 18 C 0.025 3.975 19 C -0.066 4.066 20 C -0.124 4.124 21 C -0.103 4.103 22 C -0.089 4.089 23 C 0.001 3.999 24 O -0.196 6.196 25 H 0.093 0.907 26 H 0.007 0.993 27 H 0.029 0.971 28 H 0.260 0.740 29 H 0.331 0.669 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.137 0.863 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.681 -4.809 -17.618 18.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.104 3.896 3 H 0.059 0.941 4 C -0.535 4.535 5 H 0.082 0.918 6 C -0.144 4.144 7 N -0.536 5.536 8 Si 0.727 3.273 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.304 5.304 13 C 0.059 3.941 14 H 0.103 0.897 15 C -0.195 4.195 16 C 0.062 3.938 17 N -0.220 5.220 18 C -0.087 4.087 19 C -0.085 4.085 20 C -0.143 4.143 21 C -0.121 4.121 22 C -0.108 4.108 23 C -0.050 4.050 24 O -0.086 6.086 25 H 0.111 0.889 26 H 0.026 0.974 27 H 0.048 0.952 28 H 0.070 0.930 29 H 0.149 0.851 30 H 0.099 0.901 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.151 0.849 34 H 0.152 0.848 35 H 0.155 0.845 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.886 -4.088 -17.330 17.905 hybrid contribution -0.345 -0.919 0.696 1.203 sum 1.541 -5.006 -16.635 17.440 Atomic orbital electron populations 1.22474 1.00412 0.99475 1.00832 1.19311 0.89806 0.94721 0.85793 0.94079 1.21085 1.30467 1.12618 0.89289 0.91758 1.24937 0.95239 0.95201 0.99051 1.69875 1.37056 1.23166 1.23494 0.86475 0.78443 0.80027 0.82307 1.20704 1.21409 1.19924 1.61126 1.58678 1.08442 1.02163 1.20327 1.00266 0.92208 0.81296 0.89710 1.21831 0.95531 0.99655 1.02470 1.27061 0.86553 0.83001 0.97140 1.70721 1.23492 1.27158 1.00661 1.19995 0.99386 0.93005 0.96340 1.20295 0.99407 0.98299 0.90525 1.20993 0.98747 0.94368 1.00178 1.20955 0.97080 0.99615 0.94472 1.19896 1.02101 0.95514 0.93280 1.20472 1.00128 0.99112 0.85282 1.84622 1.57637 1.36928 1.29411 0.88884 0.97405 0.95220 0.92967 0.85129 0.90060 0.91590 0.92845 0.84879 0.84808 0.84485 0.84764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.09 8.92 37.16 0.33 -3.76 16 2 C 0.21 5.12 2.38 -68.87 -0.16 4.96 16 3 H 0.04 1.07 7.11 -51.93 -0.37 0.70 16 4 C -0.50 -13.39 8.84 -34.44 -0.30 -13.70 16 5 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 6 C 0.06 1.54 5.30 -17.82 -0.09 1.44 16 7 N -0.90 -25.08 11.32 55.43 0.63 -24.45 16 8 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 12 N -0.67 -14.12 6.03 -102.17 -0.62 -14.74 16 13 C 0.17 3.12 2.97 -68.86 -0.20 2.92 16 14 H 0.09 1.59 7.11 -51.93 -0.37 1.22 16 15 C -0.14 -2.25 9.38 37.16 0.35 -1.90 16 16 C 0.27 4.93 6.72 -13.10 -0.09 4.84 16 17 N -0.49 -8.83 11.34 -8.70 -0.10 -8.93 16 18 C 0.02 0.39 7.24 -84.71 -0.61 -0.22 16 19 C -0.07 -0.82 10.10 -39.28 -0.40 -1.21 16 20 C -0.12 -1.17 10.02 -39.60 -0.40 -1.57 16 21 C -0.10 -0.96 10.03 -39.52 -0.40 -1.36 16 22 C -0.09 -1.06 10.06 -39.55 -0.40 -1.45 16 23 C 0.00 0.02 7.43 -38.64 -0.29 -0.27 16 24 O -0.20 -3.48 10.77 3.60 0.04 -3.44 16 25 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 26 H 0.01 0.15 7.43 -51.93 -0.39 -0.23 16 27 H 0.03 0.68 8.13 -51.93 -0.42 0.26 16 28 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.33 6.92 8.09 -39.29 -0.32 6.60 16 30 H 0.08 1.40 7.43 -51.93 -0.39 1.01 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.13 1.40 8.06 -52.48 -0.42 0.98 16 34 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 35 H 0.14 0.81 8.06 -52.48 -0.42 0.39 16 36 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 305.71 15.07 4.61 4.61 Total: -1.00 -29.50 305.71 -7.77 -37.27 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -4.65 Total: 4.78 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: -2.66 Total: -11.29 kcal Atomic # 7 Polarization: -48.03 SS G_CDS: -0.09 Total: -48.12 kcal Atomic # 8 Polarization: -3.48 SS G_CDS: 0.04 Total: -3.44 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.50 -7.77 -37.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602867197.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.546 kcal (2) G-P(sol) polarization free energy of solvation -29.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds