Wall clock time and date at job start Mon Mar 30 2020 00:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.46984 * 2 1 4 4 C 1.50696 * 109.47094 * 119.99840 * 2 1 3 5 5 H 1.07999 * 120.00001 * 120.00227 * 4 2 1 6 6 C 1.37881 * 120.00259 * 299.99820 * 4 2 1 7 7 N 1.31516 * 119.99852 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00342 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47147 * 90.00244 * 8 6 4 10 10 H 1.48503 * 109.47348 * 210.00592 * 8 6 4 11 11 H 1.48504 * 109.47053 * 330.00664 * 8 6 4 12 12 N 1.46894 * 109.47503 * 239.99993 * 2 1 3 13 13 C 1.46904 * 111.00319 * 84.99744 * 12 2 1 14 14 H 1.09003 * 109.46970 * 325.00352 * 13 12 2 15 15 C 1.53005 * 109.47042 * 85.00013 * 13 12 2 16 16 C 1.50690 * 109.47390 * 205.00417 * 13 12 2 17 17 N 1.29911 * 124.85569 * 135.00092 * 16 13 12 18 18 C 1.36060 * 108.79979 * 180.02562 * 17 16 13 19 19 C 1.39586 * 133.80922 * 180.02562 * 18 17 16 20 20 C 1.37686 * 119.73307 * 179.97438 * 19 18 17 21 21 C 1.38720 * 120.41856 * 359.97438 * 20 19 18 22 22 C 1.37906 * 120.47863 * 359.79462 * 21 20 19 23 23 C 1.38665 * 119.87207 * 0.41473 * 22 21 20 24 24 O 1.34228 * 124.85638 * 315.04954 * 16 13 12 25 25 H 1.08996 * 109.47197 * 299.99951 * 1 2 3 26 26 H 1.09006 * 109.46865 * 60.00060 * 1 2 3 27 27 H 1.08999 * 109.46700 * 179.97438 * 1 2 3 28 28 H 0.97000 * 120.00117 * 179.97438 * 7 6 4 29 29 H 1.00898 * 110.99791 * 321.04936 * 12 2 1 30 30 H 1.08997 * 109.47185 * 300.00451 * 15 13 12 31 31 H 1.09003 * 109.46961 * 60.00333 * 15 13 12 32 32 H 1.08998 * 109.47055 * 180.02562 * 15 13 12 33 33 H 1.08003 * 120.13412 * 359.93491 * 19 18 17 34 34 H 1.07995 * 119.78840 * 179.97438 * 20 19 18 35 35 H 1.08004 * 119.75963 * 180.02562 * 21 20 19 36 36 H 1.07999 * 120.06413 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1202 4.0080 9 1 3.6296 -0.5457 4.4124 10 1 1.3430 -0.9491 5.1120 11 1 2.4859 -2.5661 3.7120 12 7 2.0197 -0.6924 -1.1994 13 6 2.0825 0.2226 -2.3469 14 1 1.2576 0.9329 -2.2907 15 6 3.4112 0.9810 -2.3223 16 6 1.9787 -0.5676 -3.6258 17 7 1.2299 -0.2471 -4.6379 18 6 1.3856 -1.1836 -5.6125 19 6 0.8440 -1.3499 -6.8882 20 6 1.2141 -2.4347 -7.6511 21 6 2.1215 -3.3620 -7.1600 22 6 2.6682 -3.2079 -5.9033 23 6 2.3034 -2.1236 -5.1197 24 8 2.6459 -1.7038 -3.8818 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.7082 1.1610 3.4844 29 1 1.4496 -1.4978 -1.4100 30 1 3.4863 1.5525 -1.3973 31 1 4.2361 0.2706 -2.3785 32 1 3.4576 1.6602 -3.1735 33 1 0.1370 -0.6309 -7.2750 34 1 0.7953 -2.5645 -8.6380 35 1 2.4046 -4.2088 -7.7677 36 1 3.3744 -3.9336 -5.5278 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602867197.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:55 Heat of formation + Delta-G solvation = 16.502414 kcal Electronic energy + Delta-G solvation = -18882.144236 eV Core-core repulsion = 15945.809252 eV Total energy + Delta-G solvation = -2936.334984 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.32118 -39.17034 -38.30496 -35.90513 -35.00369 -32.59076 -31.63060 -30.21671 -28.88706 -27.26365 -25.54233 -24.12279 -23.05136 -22.40944 -21.58921 -19.02348 -18.69951 -18.06285 -17.82408 -17.06438 -16.66503 -16.10696 -15.57933 -15.09142 -14.88667 -14.74632 -14.51928 -13.78927 -13.55268 -13.46912 -13.15091 -13.12974 -12.99746 -12.83092 -12.55089 -12.53349 -12.38093 -12.33549 -12.13071 -11.87389 -11.55206 -11.08248 -10.47989 -9.82076 -9.48798 -9.22844 -8.10126 -6.20622 -0.36188 0.21949 1.30321 1.44200 1.45023 1.45717 1.56257 2.42554 2.59265 2.64987 3.19204 3.42479 3.49464 3.85285 4.03853 4.15424 4.19380 4.23380 4.32373 4.46374 4.65175 4.74597 4.79437 4.84004 4.87200 5.04834 5.06818 5.15566 5.23300 5.31551 5.33799 5.37106 5.66509 5.71939 5.76776 6.19476 6.46125 6.49179 6.63011 6.90252 7.48410 8.95890 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.037958 B = 0.004225 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.489838 B = 6625.009052 C = 6848.208629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.217 3.783 3 H 0.021 0.979 4 C -0.515 4.515 5 H 0.055 0.945 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.961 3.039 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.271 1.271 12 N -0.672 5.672 13 C 0.175 3.825 14 H 0.077 0.923 15 C -0.129 4.129 16 C 0.254 3.746 17 N -0.504 5.504 18 C -0.013 4.013 19 C -0.079 4.079 20 C -0.107 4.107 21 C -0.080 4.080 22 C -0.103 4.103 23 C -0.026 4.026 24 O -0.213 6.213 25 H 0.068 0.932 26 H 0.023 0.977 27 H 0.029 0.971 28 H 0.262 0.738 29 H 0.331 0.669 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.146 0.854 34 H 0.178 0.822 35 H 0.183 0.817 36 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.942 -6.539 -19.965 21.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.109 3.891 3 H 0.039 0.961 4 C -0.553 4.553 5 H 0.074 0.926 6 C -0.186 4.186 7 N -0.560 5.560 8 Si 0.787 3.213 9 H -0.202 1.202 10 H -0.210 1.210 11 H -0.196 1.196 12 N -0.303 5.303 13 C 0.064 3.936 14 H 0.095 0.905 15 C -0.187 4.187 16 C 0.042 3.958 17 N -0.235 5.235 18 C -0.124 4.124 19 C -0.097 4.097 20 C -0.126 4.126 21 C -0.098 4.098 22 C -0.121 4.121 23 C -0.076 4.076 24 O -0.104 6.104 25 H 0.087 0.913 26 H 0.042 0.958 27 H 0.048 0.952 28 H 0.071 0.929 29 H 0.148 0.852 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.163 0.837 34 H 0.195 0.805 35 H 0.201 0.799 36 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 2.154 -5.826 -19.700 20.656 hybrid contribution -0.450 -0.467 1.183 1.349 sum 1.705 -6.293 -18.517 19.631 Atomic orbital electron populations 1.22294 1.00073 0.99232 1.00353 1.19065 0.89923 0.93567 0.86531 0.96080 1.21351 1.30644 1.12609 0.90718 0.92648 1.25665 0.95367 0.95852 1.01733 1.69992 1.37748 1.24164 1.24109 0.85514 0.77982 0.78974 0.78867 1.20201 1.20963 1.19586 1.60978 1.58230 1.08707 1.02421 1.20199 1.00813 0.91708 0.80865 0.90491 1.21764 0.94542 0.99620 1.02777 1.26634 0.88060 0.83881 0.97182 1.70610 1.23337 1.28214 1.01338 1.20446 1.01160 0.93245 0.97583 1.20698 0.99741 0.99839 0.89469 1.21559 0.97310 0.92471 1.01230 1.21585 0.94856 1.00102 0.93255 1.20385 1.02895 0.94855 0.94008 1.21082 1.01067 1.00560 0.84891 1.84548 1.58051 1.36912 1.30876 0.91273 0.95803 0.95232 0.92891 0.85218 0.91167 0.91745 0.90714 0.83657 0.80475 0.79934 0.83033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.79 8.92 71.98 0.64 -7.15 16 2 C 0.22 10.89 2.38 44.17 0.11 10.99 16 3 H 0.02 1.15 7.11 -2.38 -0.02 1.13 16 4 C -0.51 -28.38 8.84 25.60 0.23 -28.15 16 5 H 0.06 3.09 7.81 -2.91 -0.02 3.07 16 6 C 0.01 0.68 5.30 84.66 0.45 1.13 16 7 N -0.92 -52.34 11.32 21.45 0.24 -52.10 16 8 Si 0.96 43.78 29.54 68.60 2.03 45.81 16 9 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 11 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 12 N -0.67 -29.22 6.03 -477.17 -2.88 -32.10 16 13 C 0.17 6.66 2.97 44.17 0.13 6.79 16 14 H 0.08 3.02 7.11 -2.39 -0.02 3.00 16 15 C -0.13 -4.37 9.38 71.98 0.68 -3.69 16 16 C 0.25 9.45 6.72 88.39 0.59 10.04 16 17 N -0.50 -18.56 11.34 -296.27 -3.36 -21.92 16 18 C -0.01 -0.41 7.24 39.32 0.28 -0.13 16 19 C -0.08 -1.77 10.10 22.46 0.23 -1.54 16 20 C -0.11 -1.54 10.02 22.25 0.22 -1.32 16 21 C -0.08 -1.12 10.03 22.31 0.22 -0.90 16 22 C -0.10 -2.19 10.06 22.29 0.22 -1.97 16 23 C -0.03 -0.81 7.43 22.88 0.17 -0.64 16 24 O -0.21 -7.78 10.77 -10.02 -0.11 -7.89 16 25 H 0.07 3.71 6.07 -2.39 -0.01 3.70 16 26 H 0.02 1.03 7.43 -2.38 -0.02 1.02 16 27 H 0.03 1.38 8.13 -2.39 -0.02 1.36 16 28 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 29 H 0.33 14.31 8.09 -89.70 -0.73 13.58 16 30 H 0.07 2.51 7.43 -2.39 -0.02 2.49 16 31 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.15 2.78 8.06 -2.91 -0.02 2.75 16 34 H 0.18 1.06 8.06 -2.91 -0.02 1.04 16 35 H 0.18 0.94 8.06 -2.91 -0.02 0.92 16 36 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -65.83 305.71 0.47 -65.36 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 0.37 Total: 19.38 kcal Atomic # 6 Polarization: -20.71 SS G_CDS: 4.18 Total: -16.54 kcal Atomic # 7 Polarization: -100.13 SS G_CDS: -5.99 Total: -106.12 kcal Atomic # 8 Polarization: -7.78 SS G_CDS: -0.11 Total: -7.89 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -65.83 0.47 -65.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602867197.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.864 kcal (2) G-P(sol) polarization free energy of solvation -65.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds