Wall clock time and date at job start Sun Mar 29 2020 23:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46141 * 110.99947 * 2 1 4 4 C 1.51003 * 113.76254 * 163.71945 * 3 2 1 5 5 N 1.47308 * 110.20414 * 64.00046 * 4 3 2 6 6 C 1.34776 * 121.14713 * 97.34833 * 5 4 3 7 7 O 1.21746 * 119.99815 * 0.02562 * 6 5 4 8 8 C 1.46172 * 119.99820 * 180.02562 * 6 5 4 9 9 H 1.07991 * 120.00059 * 354.78809 * 8 6 5 10 10 C 1.40127 * 119.99639 * 174.78577 * 8 6 5 11 11 N 1.30635 * 120.00011 * 6.21186 * 10 8 6 12 12 Si 1.86798 * 119.99760 * 186.21109 * 10 8 6 13 13 H 1.48500 * 109.47469 * 94.98595 * 12 10 8 14 14 H 1.48499 * 109.46886 * 214.98333 * 12 10 8 15 15 H 1.48501 * 109.47199 * 334.98407 * 12 10 8 16 16 C 1.39589 * 117.70216 * 277.37143 * 5 4 3 17 17 C 1.38952 * 120.58950 * 248.09365 * 16 5 4 18 18 C 1.38132 * 119.63292 * 176.60746 * 17 16 5 19 19 C 1.38356 * 120.23597 * 0.05811 * 18 17 16 20 20 C 1.38462 * 120.19908 * 0.62659 * 19 18 17 21 21 C 1.37821 * 119.71261 * 359.85127 * 20 19 18 22 22 C 1.46432 * 111.00070 * 233.53421 * 2 1 3 23 23 H 1.09001 * 109.46672 * 182.51430 * 1 2 3 24 24 H 1.09003 * 109.46769 * 302.51175 * 1 2 3 25 25 H 1.09000 * 109.47170 * 62.51244 * 1 2 3 26 26 H 1.09006 * 108.63047 * 284.82232 * 3 2 1 27 27 H 1.08997 * 108.62784 * 42.61541 * 3 2 1 28 28 H 1.09004 * 109.34561 * 303.78415 * 4 3 2 29 29 H 1.08996 * 109.22917 * 184.15505 * 4 3 2 30 30 H 0.97005 * 119.99612 * 179.97438 * 11 10 8 31 31 H 1.07999 * 120.18642 * 356.58983 * 17 16 5 32 32 H 1.07995 * 119.88460 * 180.02562 * 18 17 16 33 33 H 1.08001 * 119.90399 * 180.62872 * 19 18 17 34 34 H 1.08003 * 120.14438 * 179.87610 * 20 19 18 35 35 H 1.09004 * 109.51367 * 331.61896 * 22 2 1 36 36 H 1.08992 * 109.51913 * 91.79629 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9928 1.3643 0.0000 4 6 3.4493 1.4570 0.3874 5 7 4.2853 0.7616 -0.6063 6 6 4.8989 1.4385 -1.5971 7 8 4.7674 2.6458 -1.6817 8 6 5.7223 0.7229 -2.5701 9 1 5.9078 -0.3338 -2.4471 10 6 6.2709 1.4082 -3.6623 11 7 6.1492 2.7061 -3.7471 12 14 7.1762 0.4658 -4.9971 13 1 6.2410 0.1623 -6.1100 14 1 8.3021 1.2889 -5.5072 15 1 7.7053 -0.8029 -4.4352 16 6 4.4196 -0.6227 -0.4866 17 6 5.6404 -1.1871 -0.1375 18 6 5.7342 -2.5532 0.0442 19 6 4.6197 -3.3562 -0.1214 20 6 3.4058 -2.7969 -0.4830 21 6 3.3110 -1.4354 -0.6746 22 6 1.9938 -0.8125 -1.0994 23 1 -0.3633 -1.0267 0.0451 24 1 -0.3633 0.5524 0.8667 25 1 -0.3633 0.4743 -0.9117 26 1 1.8708 1.7842 -0.9986 27 1 1.4079 1.9618 0.6993 28 1 3.5928 0.9971 1.3652 29 1 3.7420 2.5058 0.4352 30 1 6.5293 3.1805 -4.5030 31 1 6.5111 -0.5613 -0.0093 32 1 6.6809 -2.9961 0.3159 33 1 4.6968 -4.4225 0.0320 34 1 2.5369 -3.4248 -0.6139 35 1 1.2804 -1.5998 -1.3430 36 1 2.1544 -0.1820 -1.9738 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082275310.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:31:29 Heat of formation + Delta-G solvation = 6.415833 kcal Electronic energy + Delta-G solvation = -20064.226624 eV Core-core repulsion = 17127.454254 eV Total energy + Delta-G solvation = -2936.772371 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.81856 -37.17639 -36.72586 -33.88479 -32.51944 -31.41332 -30.25786 -28.14656 -26.40046 -26.06972 -23.91060 -22.19737 -21.52694 -20.19608 -19.04551 -17.48756 -15.97204 -15.67009 -15.37737 -14.96412 -14.50602 -14.36221 -14.26864 -13.97546 -13.38912 -12.95722 -12.63741 -12.47551 -12.21777 -11.98650 -11.59746 -11.43048 -11.29910 -11.02186 -10.96806 -10.89770 -10.78402 -10.49460 -10.29103 -10.21291 -8.91320 -8.46451 -8.25974 -8.00230 -7.69564 -7.22941 -6.27432 -4.70278 1.91149 1.97948 3.10690 3.18597 3.22874 4.02068 4.08715 4.39482 4.42078 4.57550 5.15915 5.32177 5.36233 5.51428 5.54790 5.58554 5.64865 5.71811 5.83268 5.92577 5.93604 5.98366 6.08397 6.21100 6.28630 6.35730 6.51697 6.61305 6.92036 7.01675 7.17526 7.31109 7.36932 7.40469 7.42471 7.83939 8.04159 8.30524 8.96495 9.35311 10.45989 10.65272 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.018024 B = 0.008840 C = 0.006977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.151307 B = 3166.578744 C = 4011.987393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.549 5.549 3 C 0.047 3.953 4 C 0.128 3.872 5 N -0.603 5.603 6 C 0.558 3.442 7 O -0.571 6.571 8 C -0.535 4.535 9 H 0.075 0.925 10 C 0.088 3.912 11 N -0.765 5.765 12 Si 0.905 3.095 13 H -0.272 1.272 14 H -0.278 1.278 15 H -0.262 1.262 16 C 0.205 3.795 17 C -0.119 4.119 18 C -0.116 4.116 19 C -0.144 4.144 20 C -0.103 4.103 21 C -0.095 4.095 22 C 0.107 3.893 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.021 0.979 26 H 0.036 0.964 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.088 0.912 30 H 0.269 0.731 31 H 0.124 0.876 32 H 0.115 0.885 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.071 0.929 36 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.392 -9.235 6.047 12.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.273 5.273 3 C -0.082 4.082 4 C 0.005 3.995 5 N -0.335 5.335 6 C 0.366 3.634 7 O -0.453 6.453 8 C -0.572 4.572 9 H 0.093 0.907 10 C -0.132 4.132 11 N -0.393 5.393 12 Si 0.729 3.271 13 H -0.197 1.197 14 H -0.203 1.203 15 H -0.186 1.186 16 C 0.111 3.889 17 C -0.139 4.139 18 C -0.135 4.135 19 C -0.163 4.163 20 C -0.122 4.122 21 C -0.098 4.098 22 C -0.020 4.020 23 H 0.083 0.917 24 H 0.084 0.916 25 H 0.040 0.960 26 H 0.055 0.945 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.107 0.893 30 H 0.080 0.920 31 H 0.142 0.858 32 H 0.133 0.867 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.089 0.911 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.275 -8.477 6.288 12.279 hybrid contribution 0.170 -0.169 -1.472 1.491 sum -6.105 -8.645 4.817 11.628 Atomic orbital electron populations 1.22323 0.87338 1.01615 1.00204 1.60757 1.06759 1.13794 1.46031 1.21947 0.97379 0.88087 1.00795 1.20952 0.88293 0.98888 0.91361 1.46059 1.52620 1.03770 1.31095 1.18284 0.79310 0.86588 0.79194 1.90621 1.65990 1.14300 1.74372 1.20989 1.31649 0.96472 1.08070 0.90698 1.25740 0.94702 0.94506 0.98266 1.70007 1.34423 1.07633 1.27269 0.86382 0.79320 0.80377 0.80990 1.19743 1.20345 1.18605 1.17324 0.92207 0.84638 0.94756 1.21400 0.97973 0.95009 0.99555 1.20932 0.98131 0.93400 1.00998 1.20950 0.93129 0.99027 1.03160 1.20680 0.97339 0.93651 1.00563 1.20096 0.95203 0.93191 1.01327 1.20995 0.93082 0.96062 0.91885 0.91665 0.91639 0.96016 0.94540 0.91124 0.92020 0.89331 0.92012 0.85816 0.86678 0.86890 0.86768 0.91101 0.92822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.40 60.07 0.56 0.98 16 2 N -0.55 -8.93 4.58 -246.02 -1.13 -10.06 16 3 C 0.05 0.83 5.19 -5.24 -0.03 0.80 16 4 C 0.13 2.58 5.91 -4.60 -0.03 2.55 16 5 N -0.60 -14.07 2.32 -115.69 -0.27 -14.34 16 6 C 0.56 15.81 7.56 -13.08 -0.10 15.72 16 7 O -0.57 -18.16 14.64 5.15 0.08 -18.08 16 8 C -0.54 -15.10 8.64 -35.69 -0.31 -15.41 16 9 H 0.07 2.01 6.07 -52.49 -0.32 1.69 16 10 C 0.09 2.45 5.50 -17.35 -0.10 2.35 16 11 N -0.76 -22.67 11.85 55.55 0.66 -22.01 16 12 Si 0.90 20.29 29.56 -169.99 -5.03 15.27 16 13 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 14 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 15 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 16 C 0.20 4.28 4.22 -83.88 -0.35 3.92 16 17 C -0.12 -2.32 8.44 -39.36 -0.33 -2.65 16 18 C -0.12 -1.87 10.03 -39.58 -0.40 -2.26 16 19 C -0.14 -2.14 10.05 -39.46 -0.40 -2.54 16 20 C -0.10 -1.62 9.70 -39.65 -0.38 -2.00 16 21 C -0.10 -1.76 5.50 -104.06 -0.57 -2.33 16 22 C 0.11 1.85 5.25 -4.70 -0.02 1.83 16 23 H 0.06 0.72 7.95 -51.93 -0.41 0.31 16 24 H 0.06 0.73 7.99 -51.93 -0.42 0.32 16 25 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.04 0.74 7.85 -51.93 -0.41 0.34 16 27 H 0.07 1.06 7.83 -51.93 -0.41 0.65 16 28 H 0.06 1.13 8.06 -51.93 -0.42 0.72 16 29 H 0.09 1.88 7.32 -51.93 -0.38 1.50 16 30 H 0.27 7.24 8.29 -40.82 -0.34 6.90 16 31 H 0.12 2.48 8.06 -52.49 -0.42 2.06 16 32 H 0.12 1.55 8.06 -52.49 -0.42 1.12 16 33 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 34 H 0.11 1.48 7.99 -52.48 -0.42 1.06 16 35 H 0.07 1.03 7.43 -51.93 -0.39 0.64 16 36 H 0.05 1.09 7.70 -51.93 -0.40 0.69 16 LS Contribution 296.47 15.07 4.47 4.47 Total: -1.00 -33.15 296.47 -8.46 -41.61 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -4.79 Total: 2.18 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: -2.45 Total: 0.96 kcal Atomic # 7 Polarization: -45.67 SS G_CDS: -0.74 Total: -46.40 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: 0.08 Total: -18.08 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.03 Total: 15.27 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -33.15 -8.46 -41.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082275310.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.025 kcal (2) G-P(sol) polarization free energy of solvation -33.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds