Wall clock time and date at job start Sun Mar 29 2020 23:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35970 * 117.00100 * 2 1 4 4 C 1.38745 * 120.14124 * 359.97438 * 3 2 1 5 5 C 1.37906 * 120.31198 * 179.72349 * 4 3 2 6 6 C 1.39356 * 120.21028 * 0.29942 * 5 4 3 7 7 C 1.38882 * 119.03746 * 359.97438 * 6 5 4 8 8 C 1.37678 * 120.85559 * 0.02562 * 7 6 5 9 9 C 1.51141 * 106.35982 * 179.97438 * 7 6 5 10 10 C 1.53004 * 110.50004 * 118.65411 * 9 7 6 11 11 C 1.50704 * 110.62314 * 241.28747 * 9 7 6 12 12 H 1.07997 * 119.99492 * 356.20413 * 11 9 7 13 13 C 1.37875 * 119.99761 * 176.20238 * 11 9 7 14 14 N 1.31509 * 120.00226 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 119.99430 * 180.02562 * 13 11 9 16 16 H 1.48492 * 109.47485 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.46971 * 120.00259 * 15 13 11 18 18 H 1.48502 * 109.46842 * 239.99966 * 15 13 11 19 19 C 1.51374 * 104.10331 * 0.02562 * 9 7 6 20 20 O 1.21295 * 126.44050 * 179.97438 * 19 9 7 21 21 N 1.34370 * 107.12962 * 359.97438 * 19 9 7 22 22 C 1.46499 * 123.89391 * 180.02562 * 21 19 9 23 23 H 1.09000 * 109.47114 * 300.00148 * 1 2 3 24 24 H 1.08996 * 109.47307 * 60.00383 * 1 2 3 25 25 H 1.09002 * 109.46969 * 180.02562 * 1 2 3 26 26 H 1.08002 * 119.84574 * 0.02562 * 4 3 2 27 27 H 1.08001 * 119.89461 * 180.27551 * 5 4 3 28 28 H 1.08004 * 120.05979 * 180.02562 * 8 7 6 29 29 H 1.08997 * 109.47274 * 303.86974 * 10 9 7 30 30 H 1.08997 * 109.46791 * 63.86954 * 10 9 7 31 31 H 1.09003 * 109.47024 * 183.86422 * 10 9 7 32 32 H 0.97000 * 120.00002 * 179.97438 * 14 13 11 33 33 H 1.08998 * 109.47210 * 269.95600 * 22 21 19 34 34 H 1.09000 * 109.47182 * 29.95369 * 22 21 19 35 35 H 1.08998 * 109.47160 * 149.95711 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2935 2.3770 -0.0005 5 6 1.9159 3.6076 0.0052 6 6 3.3071 3.6897 0.0053 7 6 4.0516 2.5174 0.0001 8 6 3.4324 1.2877 -0.0056 9 6 5.5040 2.9355 0.0010 10 6 6.2098 2.4181 1.2561 11 6 6.2009 2.4362 -1.2385 12 1 5.6697 1.8128 -1.9425 13 6 7.5164 2.7753 -1.4736 14 7 8.1633 3.5340 -0.6161 15 14 8.3799 2.1570 -3.0104 16 1 7.4401 1.3275 -3.8065 17 1 8.8309 3.3143 -3.8243 18 1 9.5554 1.3371 -2.6216 19 6 5.4524 4.4483 0.0079 20 8 6.4030 5.2016 0.0110 21 7 4.1555 4.8000 0.0098 22 6 3.6854 6.1875 0.0156 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.2150 2.3202 -0.0005 27 1 1.3234 4.5105 0.0093 28 1 4.0240 0.3841 -0.0092 29 1 5.6817 2.7716 2.1417 30 1 6.2147 1.3282 1.2469 31 1 7.2357 2.7860 1.2738 32 1 9.0889 3.7723 -0.7813 33 1 3.5684 6.5272 1.0447 34 1 4.4119 6.8195 -0.4952 35 1 2.7261 6.2482 -0.4983 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000225565.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:53:37 Heat of formation + Delta-G solvation = -20.704892 kcal Electronic energy + Delta-G solvation = -19985.180807 eV Core-core repulsion = 16949.513732 eV Total energy + Delta-G solvation = -3035.667076 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.68498 -38.99421 -36.57992 -34.45695 -33.96637 -31.60322 -29.77297 -28.28010 -27.07064 -26.45480 -25.29771 -22.87182 -21.70677 -20.27830 -19.15753 -17.39356 -16.89203 -15.92106 -15.53945 -15.39406 -15.02145 -14.74165 -14.46663 -13.60704 -13.33076 -12.88061 -12.76207 -12.59292 -12.35121 -12.20469 -11.99877 -11.77056 -11.45315 -11.12002 -10.97983 -10.87738 -10.73873 -10.61366 -10.28465 -9.67774 -9.38014 -9.14002 -8.56025 -8.30829 -8.18880 -6.82023 -5.98408 -4.13745 1.88467 1.94231 3.29148 3.37523 3.41395 3.57329 3.71185 3.84830 4.41236 4.45744 5.04499 5.18224 5.25088 5.25776 5.32458 5.43331 5.53151 5.78215 5.80678 5.82836 5.85147 5.96437 6.12569 6.43100 6.57160 6.71790 6.76850 6.88937 6.99340 7.07265 7.29349 7.53901 7.70355 7.80237 7.92935 8.03266 8.19612 8.82245 9.42337 9.49375 10.99759 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.020103 B = 0.007915 C = 0.006346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.484887 B = 3536.583710 C = 4411.297780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.320 6.320 3 C 0.087 3.913 4 C -0.189 4.189 5 C -0.121 4.121 6 C 0.118 3.882 7 C -0.059 4.059 8 C -0.095 4.095 9 C 0.088 3.912 10 C -0.117 4.117 11 C -0.522 4.522 12 H 0.068 0.932 13 C 0.071 3.929 14 N -0.834 5.834 15 Si 0.895 3.105 16 H -0.271 1.271 17 H -0.284 1.284 18 H -0.281 1.281 19 C 0.528 3.472 20 O -0.467 6.467 21 N -0.574 5.574 22 C 0.084 3.916 23 H 0.050 0.950 24 H 0.050 0.950 25 H 0.092 0.908 26 H 0.123 0.877 27 H 0.116 0.884 28 H 0.132 0.868 29 H 0.014 0.986 30 H 0.046 0.954 31 H 0.091 0.909 32 H 0.262 0.738 33 H 0.051 0.949 34 H 0.073 0.927 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.534 -1.903 2.226 13.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.234 6.234 3 C 0.042 3.958 4 C -0.208 4.208 5 C -0.143 4.143 6 C 0.022 3.978 7 C -0.062 4.062 8 C -0.114 4.114 9 C 0.084 3.916 10 C -0.175 4.175 11 C -0.559 4.559 12 H 0.087 0.913 13 C -0.137 4.137 14 N -0.467 5.467 15 Si 0.722 3.278 16 H -0.195 1.195 17 H -0.210 1.210 18 H -0.207 1.207 19 C 0.319 3.681 20 O -0.335 6.335 21 N -0.300 5.300 22 C -0.059 4.059 23 H 0.068 0.932 24 H 0.069 0.931 25 H 0.111 0.889 26 H 0.141 0.859 27 H 0.134 0.866 28 H 0.150 0.850 29 H 0.033 0.967 30 H 0.065 0.935 31 H 0.109 0.891 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.605 -1.383 2.281 12.884 hybrid contribution -0.041 0.145 -0.946 0.958 sum -12.646 -1.238 1.335 12.777 Atomic orbital electron populations 1.22921 0.79470 1.03118 1.00905 1.86043 1.20406 1.27210 1.89749 1.18706 0.91970 0.83698 1.01422 1.20633 0.98998 0.91531 1.09647 1.19916 0.91000 0.97253 1.06152 1.18206 0.90959 0.87495 1.01170 1.20267 0.97540 0.90909 0.97459 1.19415 0.90392 0.97636 1.03970 1.17793 0.87214 0.88432 0.98166 1.21605 1.03074 0.99606 0.93178 1.20599 0.95985 1.33706 1.05642 0.91342 1.25070 0.97406 0.94454 0.96803 1.70075 1.10364 1.32026 1.34237 0.86483 0.79630 0.78638 0.83051 1.19543 1.20987 1.20712 1.21904 0.79857 0.92824 0.73563 1.90669 1.37517 1.59120 1.46217 1.46389 1.07584 1.04288 1.71758 1.21556 1.00082 0.83005 1.01239 0.93150 0.93116 0.88918 0.85935 0.86634 0.85027 0.96681 0.93527 0.89051 0.92755 0.93054 0.90775 0.91818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.81 101.05 0.99 1.31 16 2 O -0.32 -4.89 10.50 -19.65 -0.21 -5.09 16 3 C 0.09 1.49 6.69 -39.18 -0.26 1.22 16 4 C -0.19 -2.88 9.02 -39.52 -0.36 -3.24 16 5 C -0.12 -2.00 9.73 -39.29 -0.38 -2.38 16 6 C 0.12 2.40 6.70 -83.60 -0.56 1.84 16 7 C -0.06 -1.29 4.95 -104.37 -0.52 -1.81 16 8 C -0.10 -1.87 9.98 -39.57 -0.39 -2.26 16 9 C 0.09 2.20 0.66 -157.41 -0.10 2.09 16 10 C -0.12 -2.81 8.40 37.16 0.31 -2.50 16 11 C -0.52 -14.21 8.09 -34.44 -0.28 -14.49 16 12 H 0.07 1.86 7.77 -52.49 -0.41 1.45 16 13 C 0.07 1.94 5.17 -17.82 -0.09 1.85 16 14 N -0.83 -23.94 9.08 55.43 0.50 -23.44 16 15 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 16 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 C 0.53 13.64 6.69 -10.84 -0.07 13.56 16 20 O -0.47 -13.42 15.29 5.54 0.08 -13.34 16 21 N -0.57 -12.35 3.14 -120.57 -0.38 -12.73 16 22 C 0.08 1.40 10.77 59.85 0.64 2.05 16 23 H 0.05 0.45 7.67 -51.93 -0.40 0.06 16 24 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 25 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.12 1.46 6.30 -52.49 -0.33 1.13 16 27 H 0.12 1.57 7.70 -52.49 -0.40 1.17 16 28 H 0.13 2.52 8.06 -52.48 -0.42 2.10 16 29 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.09 2.43 6.28 -51.93 -0.33 2.10 16 32 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 1.28 7.95 -51.93 -0.41 0.87 16 35 H 0.06 0.87 7.62 -51.93 -0.40 0.48 16 LS Contribution 293.42 15.07 4.42 4.42 Total: -1.00 -31.73 293.42 -5.99 -37.72 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -4.32 Total: -1.07 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -1.07 Total: -2.75 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: 0.12 Total: -36.17 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -0.12 Total: -18.43 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -31.73 -5.99 -37.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000225565.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.015 kcal (2) G-P(sol) polarization free energy of solvation -31.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds