Wall clock time and date at job start Sun Mar 29 2020 23:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35970 * 117.00100 * 2 1 4 4 C 1.38745 * 120.14124 * 359.97438 * 3 2 1 5 5 C 1.37906 * 120.31198 * 179.72349 * 4 3 2 6 6 C 1.39356 * 120.21028 * 0.29942 * 5 4 3 7 7 C 1.38882 * 119.03746 * 359.97438 * 6 5 4 8 8 C 1.37678 * 120.85559 * 0.02562 * 7 6 5 9 9 C 1.51141 * 106.35982 * 179.97438 * 7 6 5 10 10 C 1.53004 * 110.50004 * 118.65411 * 9 7 6 11 11 C 1.50704 * 110.62314 * 241.28747 * 9 7 6 12 12 H 1.07997 * 119.99492 * 356.20413 * 11 9 7 13 13 C 1.37875 * 119.99761 * 176.20238 * 11 9 7 14 14 N 1.31509 * 120.00226 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 119.99430 * 180.02562 * 13 11 9 16 16 H 1.48492 * 109.47485 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.46971 * 120.00259 * 15 13 11 18 18 H 1.48502 * 109.46842 * 239.99966 * 15 13 11 19 19 C 1.51374 * 104.10331 * 0.02562 * 9 7 6 20 20 O 1.21295 * 126.44050 * 179.97438 * 19 9 7 21 21 N 1.34370 * 107.12962 * 359.97438 * 19 9 7 22 22 C 1.46499 * 123.89391 * 180.02562 * 21 19 9 23 23 H 1.09000 * 109.47114 * 300.00148 * 1 2 3 24 24 H 1.08996 * 109.47307 * 60.00383 * 1 2 3 25 25 H 1.09002 * 109.46969 * 180.02562 * 1 2 3 26 26 H 1.08002 * 119.84574 * 0.02562 * 4 3 2 27 27 H 1.08001 * 119.89461 * 180.27551 * 5 4 3 28 28 H 1.08004 * 120.05979 * 180.02562 * 8 7 6 29 29 H 1.08997 * 109.47274 * 303.86974 * 10 9 7 30 30 H 1.08997 * 109.46791 * 63.86954 * 10 9 7 31 31 H 1.09003 * 109.47024 * 183.86422 * 10 9 7 32 32 H 0.97000 * 120.00002 * 179.97438 * 14 13 11 33 33 H 1.08998 * 109.47210 * 269.95600 * 22 21 19 34 34 H 1.09000 * 109.47182 * 29.95369 * 22 21 19 35 35 H 1.08998 * 109.47160 * 149.95711 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2935 2.3770 -0.0005 5 6 1.9159 3.6076 0.0052 6 6 3.3071 3.6897 0.0053 7 6 4.0516 2.5174 0.0001 8 6 3.4324 1.2877 -0.0056 9 6 5.5040 2.9355 0.0010 10 6 6.2098 2.4181 1.2561 11 6 6.2009 2.4362 -1.2385 12 1 5.6697 1.8128 -1.9425 13 6 7.5164 2.7753 -1.4736 14 7 8.1633 3.5340 -0.6161 15 14 8.3799 2.1570 -3.0104 16 1 7.4401 1.3275 -3.8065 17 1 8.8309 3.3143 -3.8243 18 1 9.5554 1.3371 -2.6216 19 6 5.4524 4.4483 0.0079 20 8 6.4030 5.2016 0.0110 21 7 4.1555 4.8000 0.0098 22 6 3.6854 6.1875 0.0156 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.2150 2.3202 -0.0005 27 1 1.3234 4.5105 0.0093 28 1 4.0240 0.3841 -0.0092 29 1 5.6817 2.7716 2.1417 30 1 6.2147 1.3282 1.2469 31 1 7.2357 2.7860 1.2738 32 1 9.0889 3.7723 -0.7813 33 1 3.5684 6.5272 1.0447 34 1 4.4119 6.8195 -0.4952 35 1 2.7261 6.2482 -0.4983 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000225565.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:53:37 Heat of formation + Delta-G solvation = -40.958249 kcal Electronic energy + Delta-G solvation = -19986.059059 eV Core-core repulsion = 16949.513732 eV Total energy + Delta-G solvation = -3036.545327 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.27819 -40.30797 -38.19989 -36.16694 -35.68970 -33.45475 -31.13533 -29.86650 -28.23168 -27.74123 -27.34424 -24.52597 -23.16086 -21.77609 -20.89243 -18.75983 -18.61359 -17.44918 -17.14450 -16.72082 -16.49735 -16.30626 -16.17949 -15.08520 -14.98117 -14.63108 -14.16600 -14.03756 -13.74521 -13.66051 -13.44215 -13.19489 -13.03360 -12.91751 -12.80554 -12.63833 -12.30740 -12.06846 -12.00391 -11.57361 -11.12440 -10.64187 -10.53951 -10.22865 -9.67844 -8.29616 -8.04272 -6.26512 0.49816 0.50052 1.38673 1.40345 1.52184 2.02125 2.15610 2.42652 2.50042 2.98229 3.17247 3.78074 3.95339 4.03378 4.31991 4.34842 4.44973 4.50455 4.55179 4.55783 4.58540 4.75660 4.82248 4.85355 4.97193 5.05944 5.17143 5.30905 5.41689 5.47430 5.60694 5.72668 5.86301 6.07358 6.15316 6.36214 6.65138 6.74450 7.38845 7.57612 8.91725 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.020103 B = 0.007915 C = 0.006346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.484887 B = 3536.583710 C = 4411.297780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.337 6.337 3 C 0.098 3.902 4 C -0.174 4.174 5 C -0.099 4.099 6 C 0.089 3.911 7 C -0.086 4.086 8 C -0.117 4.117 9 C 0.070 3.930 10 C -0.106 4.106 11 C -0.534 4.534 12 H 0.060 0.940 13 C 0.023 3.977 14 N -0.862 5.862 15 Si 0.954 3.046 16 H -0.264 1.264 17 H -0.287 1.287 18 H -0.273 1.273 19 C 0.517 3.483 20 O -0.515 6.515 21 N -0.574 5.574 22 C 0.079 3.921 23 H 0.068 0.932 24 H 0.066 0.934 25 H 0.116 0.884 26 H 0.170 0.830 27 H 0.156 0.844 28 H 0.120 0.880 29 H 0.025 0.975 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.258 0.742 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.434 -2.313 1.848 17.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.251 6.251 3 C 0.052 3.948 4 C -0.193 4.193 5 C -0.120 4.120 6 C -0.006 4.006 7 C -0.089 4.089 8 C -0.136 4.136 9 C 0.066 3.934 10 C -0.164 4.164 11 C -0.572 4.572 12 H 0.078 0.922 13 C -0.182 4.182 14 N -0.496 5.496 15 Si 0.779 3.221 16 H -0.188 1.188 17 H -0.213 1.213 18 H -0.198 1.198 19 C 0.307 3.693 20 O -0.388 6.388 21 N -0.300 5.300 22 C -0.062 4.062 23 H 0.087 0.913 24 H 0.084 0.916 25 H 0.134 0.866 26 H 0.187 0.813 27 H 0.174 0.826 28 H 0.138 0.862 29 H 0.044 0.956 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -16.584 -1.822 1.907 16.792 hybrid contribution 0.926 0.156 -0.788 1.226 sum -15.658 -1.666 1.118 15.786 Atomic orbital electron populations 1.23347 0.76419 1.05418 1.02443 1.86041 1.23489 1.26359 1.89256 1.18725 0.91126 0.85272 0.99634 1.21122 1.01124 0.90051 1.06963 1.20370 0.89243 0.99390 1.03032 1.18482 0.92415 0.86110 1.03613 1.20048 0.95850 0.92705 1.00276 1.19413 0.92115 0.96510 1.05540 1.17795 0.89616 0.88806 0.97158 1.21429 1.01345 0.99703 0.93897 1.20824 0.96372 1.33539 1.06427 0.92216 1.25814 0.98181 0.94689 0.99490 1.70249 1.10230 1.33283 1.35816 0.85565 0.78771 0.78009 0.79735 1.18845 1.21312 1.19809 1.21871 0.81002 0.93006 0.73380 1.90616 1.39389 1.60062 1.48771 1.46175 1.06490 1.06482 1.70808 1.21831 1.01283 0.80176 1.02909 0.91337 0.91582 0.86606 0.81308 0.82631 0.86173 0.95628 0.93045 0.92113 0.93236 0.91152 0.92191 0.87921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.39 16 2 O -0.34 -9.18 10.50 -93.21 -0.98 -10.16 16 3 C 0.10 3.06 6.69 22.53 0.15 3.21 16 4 C -0.17 -4.40 9.02 22.31 0.20 -4.20 16 5 C -0.10 -2.81 9.73 22.46 0.22 -2.59 16 6 C 0.09 3.46 6.70 38.30 0.26 3.72 16 7 C -0.09 -3.79 4.95 -19.70 -0.10 -3.88 16 8 C -0.12 -4.54 9.98 22.28 0.22 -4.32 16 9 C 0.07 3.64 0.66 -54.06 -0.04 3.60 16 10 C -0.11 -5.36 8.40 71.98 0.60 -4.75 16 11 C -0.53 -30.24 8.09 25.60 0.21 -30.04 16 12 H 0.06 3.37 7.77 -2.91 -0.02 3.34 16 13 C 0.02 1.31 5.17 84.66 0.44 1.75 16 14 N -0.86 -51.96 9.08 21.45 0.19 -51.76 16 15 Si 0.95 45.07 29.54 68.60 2.03 47.09 16 16 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 17 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 18 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 19 C 0.52 27.60 6.69 87.94 0.59 28.19 16 20 O -0.52 -31.13 15.29 -3.08 -0.05 -31.18 16 21 N -0.57 -24.46 3.14 -654.00 -2.05 -26.51 16 22 C 0.08 2.50 10.77 127.77 1.38 3.88 16 23 H 0.07 0.84 7.67 -2.39 -0.02 0.82 16 24 H 0.07 0.85 7.66 -2.39 -0.02 0.83 16 25 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.17 2.75 6.30 -2.91 -0.02 2.73 16 27 H 0.16 3.17 7.70 -2.91 -0.02 3.15 16 28 H 0.12 4.77 8.06 -2.91 -0.02 4.74 16 29 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.05 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.06 3.43 6.28 -2.39 -0.01 3.42 16 32 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 33 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.06 2.06 7.95 -2.39 -0.02 2.04 16 35 H 0.10 2.41 7.62 -2.39 -0.02 2.39 16 Total: -1.00 -73.55 293.42 5.48 -68.07 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: 1.10 Total: 8.51 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: 5.24 Total: -4.05 kcal Atomic # 7 Polarization: -76.41 SS G_CDS: -1.86 Total: -78.27 kcal Atomic # 8 Polarization: -40.32 SS G_CDS: -1.03 Total: -41.34 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Total: -73.55 5.48 -68.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000225565.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.111 kcal (2) G-P(sol) polarization free energy of solvation -73.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds