Wall clock time and date at job start Sun Mar 29 2020 23:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35970 * 116.99409 * 2 1 4 4 C 1.38741 * 120.15156 * 359.97438 * 3 2 1 5 5 C 1.37905 * 120.31838 * 179.97438 * 4 3 2 6 6 C 1.39356 * 120.20408 * 359.97438 * 5 4 3 7 7 C 1.38883 * 119.03969 * 0.02562 * 6 5 4 8 8 C 1.37662 * 120.85890 * 359.97438 * 7 6 5 9 9 C 1.51147 * 106.35434 * 179.97438 * 7 6 5 10 10 C 1.52999 * 110.50202 * 241.20616 * 9 7 6 11 11 C 1.50699 * 110.50036 * 118.65391 * 9 7 6 12 12 H 1.08004 * 120.00156 * 0.02562 * 11 9 7 13 13 C 1.37878 * 120.00314 * 179.97438 * 11 9 7 14 14 N 1.31518 * 119.99545 * 0.02562 * 13 11 9 15 15 Si 1.86797 * 120.00541 * 180.02562 * 13 11 9 16 16 H 1.48492 * 109.47430 * 59.99458 * 15 13 11 17 17 H 1.48497 * 109.47412 * 180.02562 * 15 13 11 18 18 H 1.48507 * 109.46833 * 299.99666 * 15 13 11 19 19 C 1.51376 * 104.10549 * 0.02562 * 9 7 6 20 20 O 1.21291 * 126.43741 * 179.97438 * 19 9 7 21 21 N 1.34371 * 107.12934 * 359.97438 * 19 9 7 22 22 C 1.46500 * 123.89274 * 180.02562 * 21 19 9 23 23 H 1.08999 * 109.47426 * 299.99658 * 1 2 3 24 24 H 1.09002 * 109.47010 * 60.00143 * 1 2 3 25 25 H 1.08999 * 109.46997 * 179.97438 * 1 2 3 26 26 H 1.08005 * 119.83640 * 0.25713 * 4 3 2 27 27 H 1.08004 * 119.89534 * 179.97438 * 5 4 3 28 28 H 1.08000 * 120.06700 * 180.02562 * 8 7 6 29 29 H 1.08998 * 109.47286 * 60.00378 * 10 9 7 30 30 H 1.09007 * 109.46774 * 180.02562 * 10 9 7 31 31 H 1.08996 * 109.47136 * 299.99811 * 10 9 7 32 32 H 0.96998 * 119.99808 * 180.02562 * 14 13 11 33 33 H 1.09001 * 109.46509 * 269.95657 * 22 21 19 34 34 H 1.09002 * 109.47253 * 29.95035 * 22 21 19 35 35 H 1.08998 * 109.47291 * 149.95440 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2116 0.0000 4 6 1.2935 2.3771 -0.0005 5 6 1.9159 3.6077 0.0000 6 6 3.3070 3.6898 0.0016 7 6 4.0515 2.5174 0.0021 8 6 3.4325 1.2878 0.0016 9 6 5.5040 2.9356 0.0033 10 6 6.2109 2.4206 -1.2521 11 6 6.1975 2.4311 1.2425 12 1 5.6475 1.8566 1.9732 13 6 7.5344 2.7020 1.4430 14 7 8.2043 3.4011 0.5530 15 14 8.3943 2.0761 2.9787 16 1 8.3187 0.5936 3.0190 17 1 9.8175 2.4993 2.9564 18 1 7.7299 2.6385 4.1819 19 6 5.4523 4.4484 0.0040 20 8 6.4029 5.2017 0.0054 21 7 4.1554 4.8001 0.0027 22 6 3.6853 6.1876 0.0023 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.2150 2.3202 0.0032 27 1 1.3233 4.5106 -0.0008 28 1 4.0240 0.3842 0.0024 29 1 5.7250 2.8314 -2.1371 30 1 7.2557 2.7308 -1.2338 31 1 6.1559 1.3323 -1.2795 32 1 9.1450 3.5914 0.6938 33 1 3.5669 6.5313 1.0299 34 1 4.4125 6.8176 -0.5100 35 1 2.7267 6.2463 -0.5131 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000225567.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:53:40 Heat of formation + Delta-G solvation = -22.295106 kcal Electronic energy + Delta-G solvation = -19974.989697 eV Core-core repulsion = 16939.253664 eV Total energy + Delta-G solvation = -3035.736032 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.69595 -39.00113 -36.59865 -34.47281 -34.00495 -31.60493 -29.77379 -28.25889 -27.07624 -26.46341 -25.31771 -22.86932 -21.71850 -20.28608 -19.15711 -17.39964 -16.89963 -15.93222 -15.54931 -15.40321 -15.04058 -14.72412 -14.51335 -13.61269 -13.34604 -12.92113 -12.76844 -12.55826 -12.37452 -12.19508 -12.03682 -11.76773 -11.44652 -11.11214 -10.97834 -10.87340 -10.78356 -10.58035 -10.27938 -9.65897 -9.41584 -9.15019 -8.59766 -8.30693 -8.19374 -6.83131 -5.99405 -4.15320 1.88019 1.93426 3.31387 3.36564 3.38466 3.56848 3.69690 3.82668 4.40468 4.44840 5.04054 5.17380 5.23926 5.24974 5.32048 5.42716 5.52937 5.77357 5.79693 5.82423 5.85100 5.96384 6.11552 6.42752 6.57051 6.73564 6.76503 6.89836 6.99232 7.07320 7.30251 7.53837 7.69980 7.79651 7.97195 8.02276 8.20750 8.81023 9.38852 9.48531 10.98813 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.019918 B = 0.007937 C = 0.006337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.398407 B = 3527.048312 C = 4417.258530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.320 6.320 3 C 0.088 3.912 4 C -0.189 4.189 5 C -0.121 4.121 6 C 0.117 3.883 7 C -0.058 4.058 8 C -0.095 4.095 9 C 0.088 3.912 10 C -0.120 4.120 11 C -0.522 4.522 12 H 0.067 0.933 13 C 0.072 3.928 14 N -0.839 5.839 15 Si 0.898 3.102 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.277 1.277 19 C 0.530 3.470 20 O -0.473 6.473 21 N -0.573 5.573 22 C 0.083 3.917 23 H 0.050 0.950 24 H 0.050 0.950 25 H 0.092 0.908 26 H 0.123 0.877 27 H 0.116 0.884 28 H 0.132 0.868 29 H 0.013 0.987 30 H 0.100 0.900 31 H 0.044 0.956 32 H 0.264 0.736 33 H 0.051 0.949 34 H 0.073 0.927 35 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.561 -1.786 -2.275 13.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.234 6.234 3 C 0.043 3.957 4 C -0.208 4.208 5 C -0.143 4.143 6 C 0.021 3.979 7 C -0.061 4.061 8 C -0.114 4.114 9 C 0.084 3.916 10 C -0.178 4.178 11 C -0.559 4.559 12 H 0.085 0.915 13 C -0.135 4.135 14 N -0.472 5.472 15 Si 0.725 3.275 16 H -0.199 1.199 17 H -0.211 1.211 18 H -0.203 1.203 19 C 0.320 3.680 20 O -0.342 6.342 21 N -0.299 5.299 22 C -0.059 4.059 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.111 0.889 26 H 0.141 0.859 27 H 0.134 0.866 28 H 0.150 0.850 29 H 0.032 0.968 30 H 0.118 0.882 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.628 -1.279 -2.334 12.905 hybrid contribution -0.078 0.132 0.970 0.982 sum -12.706 -1.147 -1.364 12.830 Atomic orbital electron populations 1.22924 0.79462 1.03127 1.00908 1.86047 1.20412 1.27196 1.89737 1.18711 0.91971 0.83702 1.01359 1.20633 0.99007 0.91526 1.09672 1.19917 0.90987 0.97261 1.06103 1.18207 0.90967 0.87468 1.01278 1.20275 0.97554 0.90902 0.97395 1.19415 0.90386 0.97653 1.03948 1.17789 0.87218 0.88294 0.98263 1.21642 1.04178 0.99095 0.92864 1.20532 0.94249 1.36541 1.04575 0.91491 1.25047 0.97366 0.94361 0.96738 1.69966 1.09099 1.34637 1.33477 0.86568 0.78483 0.79300 0.83187 1.19898 1.21088 1.20257 1.21948 0.79857 0.92897 0.73316 1.90652 1.37703 1.59218 1.46670 1.46358 1.07566 1.04325 1.71694 1.21566 0.99955 0.82938 1.01456 0.93112 0.93142 0.88911 0.85923 0.86624 0.84997 0.96790 0.88203 0.93730 0.92580 0.93006 0.90789 0.91760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.81 101.05 0.99 1.31 16 2 O -0.32 -4.88 10.50 -19.65 -0.21 -5.09 16 3 C 0.09 1.50 6.69 -39.17 -0.26 1.23 16 4 C -0.19 -2.88 9.02 -39.52 -0.36 -3.24 16 5 C -0.12 -1.99 9.73 -39.29 -0.38 -2.37 16 6 C 0.12 2.38 6.70 -83.60 -0.56 1.82 16 7 C -0.06 -1.28 4.94 -104.37 -0.52 -1.80 16 8 C -0.09 -1.87 9.98 -39.57 -0.39 -2.26 16 9 C 0.09 2.21 0.66 -157.41 -0.10 2.11 16 10 C -0.12 -2.91 8.42 37.16 0.31 -2.59 16 11 C -0.52 -14.23 8.08 -34.44 -0.28 -14.51 16 12 H 0.07 1.81 7.77 -52.48 -0.41 1.41 16 13 C 0.07 1.99 5.17 -17.82 -0.09 1.90 16 14 N -0.84 -23.98 9.18 55.43 0.51 -23.47 16 15 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 16 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 17 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 C 0.53 13.67 6.72 -10.84 -0.07 13.59 16 20 O -0.47 -13.60 15.67 5.55 0.09 -13.51 16 21 N -0.57 -12.33 3.14 -120.57 -0.38 -12.71 16 22 C 0.08 1.39 10.77 59.85 0.64 2.04 16 23 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 24 H 0.05 0.45 7.67 -51.93 -0.40 0.05 16 25 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.12 1.45 6.30 -52.48 -0.33 1.12 16 27 H 0.12 1.57 7.70 -52.48 -0.40 1.16 16 28 H 0.13 2.54 8.06 -52.49 -0.42 2.12 16 29 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.10 2.67 5.89 -51.92 -0.31 2.37 16 31 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 1.24 7.95 -51.93 -0.41 0.83 16 35 H 0.06 0.85 7.62 -51.93 -0.40 0.46 16 LS Contribution 293.54 15.07 4.42 4.42 Total: -1.00 -31.67 293.54 -5.96 -37.63 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -4.30 Total: -0.80 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: -1.07 Total: -2.77 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: 0.13 Total: -36.18 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -0.12 Total: -18.60 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -31.67 -5.96 -37.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000225567.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.335 kcal (2) G-P(sol) polarization free energy of solvation -31.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds