Wall clock time and date at job start Mon Mar 30 2020 00:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53046 * 109.46152 * 2 1 4 4 C 1.53187 * 109.31543 * 178.62930 * 3 2 1 5 5 N 1.46931 * 108.77734 * 54.63327 * 4 3 2 6 6 S 1.65593 * 120.63291 * 126.37001 * 5 4 3 7 7 O 1.42106 * 104.27581 * 333.92807 * 6 5 4 8 8 O 1.42104 * 104.27905 * 206.06948 * 6 5 4 9 9 C 1.81399 * 104.45079 * 90.00018 * 6 5 4 10 10 C 1.52997 * 109.47147 * 179.97438 * 9 6 5 11 11 C 1.50706 * 109.47238 * 179.97438 * 10 9 6 12 12 H 1.07999 * 119.99515 * 0.02562 * 11 10 9 13 13 C 1.37870 * 120.00176 * 180.02562 * 11 10 9 14 14 N 1.31520 * 119.99883 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00043 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47216 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47389 * 119.99848 * 15 13 11 18 18 H 1.48501 * 109.47057 * 239.99829 * 15 13 11 19 19 C 1.46934 * 118.73661 * 306.64133 * 5 4 3 20 20 C 1.52770 * 109.00329 * 53.30986 * 19 5 4 21 21 H 1.08992 * 109.47108 * 60.00139 * 1 2 3 22 22 H 1.09000 * 109.46696 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46757 * 299.99976 * 1 2 3 24 24 H 1.09002 * 109.46541 * 119.96822 * 2 1 3 25 25 H 1.08998 * 109.49981 * 58.67451 * 3 2 1 26 26 H 1.09006 * 109.52022 * 298.59677 * 3 2 1 27 27 H 1.09004 * 109.58498 * 294.84721 * 4 3 2 28 28 H 1.09000 * 109.70968 * 174.48797 * 4 3 2 29 29 H 1.09001 * 109.47190 * 60.00203 * 9 6 5 30 30 H 1.09004 * 109.47089 * 300.00070 * 9 6 5 31 31 H 1.09001 * 109.46832 * 60.00079 * 10 9 6 32 32 H 1.09000 * 109.47611 * 300.00376 * 10 9 6 33 33 H 0.97004 * 119.99507 * 180.02562 * 14 13 11 34 34 H 1.08993 * 109.58697 * 173.14314 * 19 5 4 35 35 H 1.08990 * 109.58663 * 293.57385 * 19 5 4 36 36 H 1.09004 * 109.55803 * 185.54935 * 20 19 5 37 37 H 1.08999 * 109.35852 * 65.49859 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4430 0.0000 4 6 3.5714 1.4392 0.0346 5 7 4.0677 0.6239 -1.0824 6 16 5.1653 1.2431 -2.1566 7 8 4.9443 2.6462 -2.1138 8 8 4.9445 0.5028 -3.3493 9 6 6.7806 0.8310 -1.4415 10 6 7.8911 1.3560 -2.3536 11 6 9.2331 1.0142 -1.7592 12 1 9.2883 0.4759 -0.8246 13 6 10.3903 1.3887 -2.4085 14 7 10.3229 2.0447 -3.5464 15 14 12.0537 0.9643 -1.6720 16 1 11.8574 0.2297 -0.3965 17 1 12.8132 0.1127 -2.6224 18 1 12.8129 2.2137 -1.4114 19 6 3.5669 -0.7494 -1.2317 20 6 2.0396 -0.7229 -1.2489 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8932 -0.5134 0.8903 25 1 1.6575 1.9640 0.8777 26 1 1.6976 1.9503 -0.9021 27 1 3.9145 1.0143 0.9779 28 1 3.9438 2.4589 -0.0637 29 1 6.8704 -0.2511 -1.3463 30 1 6.8703 1.2910 -0.4574 31 1 7.8015 2.4382 -2.4492 32 1 7.8012 0.8958 -3.3376 33 1 11.1371 2.3078 -4.0034 34 1 3.9342 -1.1726 -2.1666 35 1 3.9096 -1.3564 -0.3938 36 1 1.6570 -1.7435 -1.2601 37 1 1.6973 -0.1957 -2.1395 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020180177.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:13:26 Heat of formation + Delta-G solvation = -97.681973 kcal Electronic energy + Delta-G solvation = -18338.769989 eV Core-core repulsion = 15435.208888 eV Total energy + Delta-G solvation = -2903.561101 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.74503 -36.63807 -35.40968 -33.88224 -33.77494 -31.14303 -31.12612 -27.83354 -25.56440 -23.40998 -22.79025 -21.53109 -20.25081 -18.39084 -17.53238 -16.51845 -15.85740 -15.44880 -14.75137 -14.60220 -14.56334 -14.22425 -14.15951 -13.70451 -13.35580 -12.78394 -12.52763 -12.19925 -11.98440 -11.74232 -11.59146 -11.58593 -11.52480 -11.18879 -11.08864 -10.95335 -10.91937 -10.43966 -10.43603 -10.37994 -10.34740 -9.74862 -9.29690 -8.72552 -8.50397 -6.12205 -4.17722 0.78479 3.06014 3.25430 3.32633 3.36183 4.31075 4.39686 4.55556 4.59743 4.67522 4.71526 5.08309 5.10998 5.23011 5.30498 5.39714 5.46014 5.50635 5.63652 5.63817 5.68006 5.77003 5.77450 5.80463 5.97728 6.01656 6.02292 6.27792 6.32799 6.50644 6.74487 7.30865 7.36842 7.81100 8.18162 8.85986 9.47100 10.98879 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.044849 B = 0.004560 C = 0.004486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.167036 B = 6138.824795 C = 6239.716269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 C -0.126 4.126 4 C 0.117 3.883 5 N -1.007 6.007 6 S 2.590 3.410 7 O -0.965 6.965 8 O -0.965 6.965 9 C -0.589 4.589 10 C 0.027 3.973 11 C -0.519 4.519 12 H 0.062 0.938 13 C 0.057 3.943 14 N -0.890 5.890 15 Si 0.900 3.100 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.282 1.282 19 C 0.117 3.883 20 C -0.127 4.127 21 H 0.054 0.946 22 H 0.053 0.947 23 H 0.053 0.947 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.094 0.906 29 H 0.118 0.882 30 H 0.118 0.882 31 H 0.033 0.967 32 H 0.033 0.967 33 H 0.264 0.736 34 H 0.094 0.906 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.903 -5.021 8.701 19.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 C -0.165 4.165 4 C -0.008 4.008 5 N -0.843 5.843 6 S 2.689 3.311 7 O -0.955 6.955 8 O -0.955 6.955 9 C -0.722 4.722 10 C -0.012 4.012 11 C -0.559 4.559 12 H 0.080 0.920 13 C -0.145 4.145 14 N -0.529 5.529 15 Si 0.727 3.273 16 H -0.197 1.197 17 H -0.208 1.208 18 H -0.208 1.208 19 C -0.008 4.008 20 C -0.166 4.166 21 H 0.073 0.927 22 H 0.072 0.928 23 H 0.072 0.928 24 H 0.089 0.911 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.112 0.888 29 H 0.137 0.863 30 H 0.137 0.863 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.112 0.888 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -17.056 -4.478 7.760 19.266 hybrid contribution 1.298 -0.500 0.868 1.639 sum -15.759 -4.978 8.628 18.643 Atomic orbital electron populations 1.21830 0.95295 1.01537 1.01717 1.21096 0.95344 0.96176 0.98396 1.21923 0.95435 0.96605 1.02581 1.21398 0.94504 0.95914 0.89001 1.57937 1.59146 1.22515 1.44728 1.05669 0.76793 0.74180 0.74416 1.93523 1.84876 1.30724 1.86418 1.93522 1.84881 1.73204 1.43937 1.30494 1.18659 1.10756 1.12330 1.18974 0.91511 0.97111 0.93608 1.21049 0.89728 1.37313 1.07801 0.92007 1.25075 0.99620 0.94914 0.94918 1.69972 1.28659 1.38438 1.15797 0.86411 0.83458 0.78233 0.79167 1.19652 1.20784 1.20790 1.21310 0.94518 0.82292 1.02691 1.21856 0.95500 1.00751 0.98477 0.92709 0.92785 0.92790 0.91098 0.91022 0.91383 0.91706 0.88783 0.86327 0.86329 0.94874 0.94870 0.92589 0.88773 0.91725 0.90985 0.91403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.19 37.16 0.34 -0.79 16 2 C -0.09 -0.83 2.68 -90.58 -0.24 -1.07 16 3 C -0.13 -1.28 5.36 -26.61 -0.14 -1.42 16 4 C 0.12 1.38 6.43 -3.71 -0.02 1.36 16 5 N -1.01 -13.99 3.23 -113.76 -0.37 -14.35 16 6 S 2.59 47.62 5.45 -107.50 -0.59 47.03 16 7 O -0.97 -20.23 16.59 -57.54 -0.95 -21.19 16 8 O -0.97 -20.23 16.58 -57.54 -0.95 -21.18 16 9 C -0.59 -11.47 6.12 37.16 0.23 -11.25 16 10 C 0.03 0.70 4.98 -27.88 -0.14 0.56 16 11 C -0.52 -14.49 9.11 -34.44 -0.31 -14.80 16 12 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 14 N -0.89 -26.64 13.29 55.43 0.74 -25.90 16 15 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 16 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 C 0.12 1.38 6.41 -3.92 -0.03 1.36 16 20 C -0.13 -1.28 5.34 -26.83 -0.14 -1.43 16 21 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 23 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 24 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.09 1.19 6.86 -51.93 -0.36 0.83 16 29 H 0.12 2.08 8.14 -51.92 -0.42 1.66 16 30 H 0.12 2.08 8.14 -51.92 -0.42 1.66 16 31 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 34 H 0.09 1.19 6.85 -51.93 -0.36 0.84 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 310.83 15.07 4.68 4.68 Total: -1.00 -33.86 310.83 -9.19 -43.05 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -6.17 Total: -2.43 kcal Atomic # 6 Polarization: -25.40 SS G_CDS: -0.56 Total: -25.96 kcal Atomic # 7 Polarization: -40.63 SS G_CDS: 0.37 Total: -40.26 kcal Atomic # 8 Polarization: -40.46 SS G_CDS: -1.91 Total: -42.37 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 47.62 SS G_CDS: -0.59 Total: 47.03 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -33.86 -9.19 -43.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020180177.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.632 kcal (2) G-P(sol) polarization free energy of solvation -33.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds