Wall clock time and date at job start Sun Mar 29 2020 23:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48496 * 109.46683 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47426 * 300.00172 * 3 2 1 6 6 H 1.48501 * 109.46833 * 60.00415 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00205 * 179.72412 * 7 2 1 9 9 C 1.50706 * 120.00436 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.72505 * 9 7 2 11 11 S 1.81399 * 109.47108 * 179.97438 * 10 9 7 12 12 O 1.42097 * 110.54529 * 291.62590 * 11 10 9 13 13 O 1.42100 * 110.53974 * 68.37575 * 11 10 9 14 14 N 1.65599 * 104.44808 * 180.02562 * 11 10 9 15 15 C 1.44581 * 118.64547 * 269.73586 * 14 11 10 16 16 C 1.54314 * 109.90718 * 270.85717 * 15 14 11 17 17 C 1.47091 * 110.29253 * 288.75451 * 16 15 14 18 18 C 1.52575 * 114.32704 * 62.73643 * 17 16 15 19 19 C 1.50880 * 109.35352 * 274.97971 * 18 17 16 20 20 C 1.47606 * 118.64055 * 90.00552 * 14 11 10 21 21 H 0.97004 * 120.00247 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 23 23 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 24 24 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 25 25 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 26 26 H 1.09004 * 109.44671 * 30.76121 * 15 14 11 27 27 H 1.08998 * 109.44897 * 150.68605 * 15 14 11 28 28 H 1.08999 * 109.39689 * 168.46450 * 16 15 14 29 29 H 1.08995 * 109.28499 * 48.97235 * 16 15 14 30 30 H 1.08999 * 108.51636 * 301.48205 * 17 16 15 31 31 H 1.08995 * 108.39037 * 183.89700 * 17 16 15 32 32 H 1.08994 * 109.48748 * 155.01292 * 18 17 16 33 33 H 1.08999 * 109.49083 * 34.94457 * 18 17 16 34 34 H 1.09008 * 109.36654 * 331.69439 * 19 18 17 35 35 H 1.09003 * 109.36842 * 212.07921 * 19 18 17 36 36 H 1.08999 * 108.94538 * 258.54692 * 20 14 11 37 37 H 1.09001 * 108.94954 * 17.26655 * 20 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0050 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0081 11 16 1.3381 -5.2331 -0.0073 12 8 0.6701 -5.4226 1.2324 13 8 0.6581 -5.4168 -1.2415 14 7 2.5202 -6.3927 -0.0151 15 6 3.0052 -6.8796 -1.2872 16 6 2.1519 -8.0788 -1.7507 17 6 2.4322 -9.2572 -0.9162 18 6 2.0743 -9.0838 0.5568 19 6 3.2222 -8.4185 1.2753 20 6 3.0310 -6.8910 1.2770 21 1 -0.4851 0.8401 0.0004 22 1 0.6283 -2.5592 0.8921 23 1 0.6202 -2.5546 -0.8878 24 1 2.8677 -3.6020 -0.9008 25 1 2.8758 -3.6067 0.8792 26 1 2.9385 -6.0842 -2.0295 27 1 4.0441 -7.1928 -1.1837 28 1 2.3854 -8.3090 -2.7902 29 1 1.0958 -7.8220 -1.6692 30 1 3.4949 -9.4882 -0.9892 31 1 1.8677 -10.1013 -1.3124 32 1 1.8835 -10.0602 1.0020 33 1 1.1823 -8.4634 0.6437 34 1 4.1563 -8.6653 0.7705 35 1 3.2629 -8.7789 2.3032 36 1 3.9889 -6.4147 1.4863 37 1 2.3245 -6.6249 2.0633 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020180179.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:46:18 Heat of formation + Delta-G solvation = -91.829129 kcal Electronic energy + Delta-G solvation = -18664.191125 eV Core-core repulsion = 15760.883823 eV Total energy + Delta-G solvation = -2903.307303 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.74218 -36.66053 -35.38397 -33.87828 -33.62044 -32.54590 -31.14387 -26.24042 -25.53657 -25.40520 -21.70552 -21.01442 -20.38382 -18.27038 -17.50292 -16.58580 -16.30433 -15.62683 -14.98244 -14.86192 -14.54809 -14.43831 -13.61720 -13.44404 -13.33280 -12.77265 -12.50231 -12.38211 -12.00016 -11.74835 -11.68238 -11.52791 -11.09720 -11.09100 -10.95425 -10.76344 -10.69957 -10.54990 -10.44527 -10.36485 -10.34340 -9.73540 -9.27602 -8.69785 -8.50497 -6.12263 -4.17805 0.79900 3.07076 3.25388 3.32588 3.36120 4.30472 4.38877 4.55329 4.60202 4.81736 4.83224 5.04381 5.12854 5.14570 5.22987 5.36547 5.55971 5.61901 5.66798 5.67474 5.76946 5.77813 5.89077 6.03528 6.08668 6.15865 6.22859 6.31371 6.41655 6.50658 6.86933 7.30773 7.36793 7.81020 8.18120 8.85923 9.47062 10.98867 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.043005 B = 0.004927 C = 0.004880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.925371 B = 5681.166408 C = 5736.194593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.058 3.942 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.519 4.519 8 H 0.062 0.938 9 C 0.027 3.973 10 C -0.590 4.590 11 S 2.585 3.415 12 O -0.967 6.967 13 O -0.962 6.962 14 N -0.999 5.999 15 C 0.129 3.871 16 C -0.144 4.144 17 C -0.114 4.114 18 C -0.119 4.119 19 C -0.123 4.123 20 C 0.111 3.889 21 H 0.264 0.736 22 H 0.033 0.967 23 H 0.033 0.967 24 H 0.118 0.882 25 H 0.118 0.882 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.263 -16.830 -0.135 18.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.559 4.559 8 H 0.080 0.920 9 C -0.012 4.012 10 C -0.723 4.723 11 S 2.684 3.316 12 O -0.957 6.957 13 O -0.952 6.952 14 N -0.835 5.835 15 C 0.003 3.997 16 C -0.183 4.183 17 C -0.151 4.151 18 C -0.156 4.156 19 C -0.162 4.162 20 C -0.014 4.014 21 H 0.074 0.926 22 H 0.051 0.949 23 H 0.051 0.949 24 H 0.136 0.864 25 H 0.136 0.864 26 H 0.096 0.904 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 7.209 -16.953 -0.133 18.423 hybrid contribution 1.073 1.232 -0.041 1.635 sum 8.282 -15.720 -0.173 17.770 Atomic orbital electron populations 1.69968 1.06127 1.27084 1.49713 1.25070 0.94965 0.99550 0.94907 0.86414 0.79930 0.83177 0.77775 1.19649 1.20782 1.20779 1.21049 0.93093 0.89782 1.51972 0.92013 1.18967 0.92723 0.90650 0.98822 1.30482 1.13663 1.18235 1.09929 1.05859 0.75076 0.76561 0.74132 1.93513 1.71755 1.85186 1.45238 1.93536 1.71122 1.85199 1.45380 1.57357 1.59974 1.55630 1.10541 1.21027 0.98054 0.96859 0.83802 1.21231 1.02138 0.95643 0.99263 1.20436 1.01161 0.98176 0.95333 1.21073 0.99096 1.00274 0.95193 1.21673 0.98929 0.94587 1.01048 1.21728 1.00027 0.95030 0.84589 0.92582 0.94913 0.94867 0.86363 0.86353 0.90410 0.90739 0.91037 0.90711 0.92522 0.92783 0.92148 0.91456 0.91699 0.90979 0.92007 0.88728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.65 13.29 55.43 0.74 -25.92 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.48 9.11 -34.44 -0.31 -14.80 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 9 C 0.03 0.71 4.98 -27.88 -0.14 0.57 16 10 C -0.59 -11.48 6.12 37.16 0.23 -11.26 16 11 S 2.59 47.21 5.30 -107.50 -0.57 46.64 16 12 O -0.97 -20.11 16.35 -57.54 -0.94 -21.05 16 13 O -0.96 -19.85 16.00 -57.54 -0.92 -20.77 16 14 N -1.00 -13.68 2.48 -113.63 -0.28 -13.96 16 15 C 0.13 1.52 5.16 -4.38 -0.02 1.50 16 16 C -0.14 -1.67 5.64 -28.88 -0.16 -1.83 16 17 C -0.11 -1.14 5.15 -29.79 -0.15 -1.29 16 18 C -0.12 -1.27 5.51 -28.01 -0.15 -1.42 16 19 C -0.12 -1.18 5.71 -27.30 -0.16 -1.33 16 20 C 0.11 1.30 6.21 -2.94 -0.02 1.28 16 21 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 22 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 23 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.12 2.07 8.14 -51.92 -0.42 1.65 16 25 H 0.12 2.08 8.14 -51.92 -0.42 1.66 16 26 H 0.08 0.92 7.67 -51.93 -0.40 0.53 16 27 H 0.07 0.70 8.06 -51.93 -0.42 0.28 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.07 1.06 7.24 -51.93 -0.38 0.69 16 30 H 0.06 0.49 7.36 -51.93 -0.38 0.11 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.88 7.48 -51.93 -0.39 0.50 16 34 H 0.06 0.54 7.32 -51.92 -0.38 0.16 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.09 1.22 6.58 -51.93 -0.34 0.88 16 LS Contribution 304.35 15.07 4.59 4.59 Total: -1.00 -33.52 304.35 -9.43 -42.95 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -6.03 Total: -1.68 kcal Atomic # 6 Polarization: -26.06 SS G_CDS: -0.99 Total: -27.05 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: 0.45 Total: -39.88 kcal Atomic # 8 Polarization: -39.96 SS G_CDS: -1.86 Total: -41.82 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: 47.21 SS G_CDS: -0.57 Total: 46.64 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -33.52 -9.43 -42.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020180179.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.877 kcal (2) G-P(sol) polarization free energy of solvation -33.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds