Wall clock time and date at job start Sun Mar 29 2020 23:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 119.99703 * 2 1 4 4 H 1.48497 * 109.47111 * 269.99632 * 3 2 1 5 5 H 1.48502 * 109.47467 * 29.99594 * 3 2 1 6 6 H 1.48503 * 109.47196 * 149.99645 * 3 2 1 7 7 C 1.37876 * 120.00181 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99935 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00114 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.47407 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46977 * 179.97438 * 10 9 7 12 12 S 1.81408 * 109.46659 * 180.02562 * 11 10 9 13 13 O 1.42096 * 110.53941 * 68.37861 * 12 11 10 14 14 O 1.42100 * 110.54199 * 291.62685 * 12 11 10 15 15 N 1.65599 * 104.44786 * 179.97438 * 12 11 10 16 16 C 1.46923 * 120.63397 * 270.00570 * 15 12 11 17 17 C 1.53195 * 108.77575 * 233.60996 * 16 15 12 18 18 C 1.53046 * 109.30793 * 305.36150 * 17 16 15 19 19 C 1.53043 * 109.53700 * 61.36640 * 18 17 16 20 20 C 1.46931 * 120.62873 * 90.00013 * 15 12 11 21 21 H 0.96997 * 120.00590 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.47589 * 59.99737 * 9 7 2 23 23 H 1.09006 * 109.47136 * 300.00107 * 9 7 2 24 24 H 1.08997 * 109.46733 * 59.99886 * 10 9 7 25 25 H 1.08997 * 109.47047 * 299.99936 * 10 9 7 26 26 H 1.08997 * 109.47269 * 60.00476 * 11 10 9 27 27 H 1.08997 * 109.47394 * 299.99985 * 11 10 9 28 28 H 1.08996 * 109.59375 * 113.82058 * 16 15 12 29 29 H 1.09006 * 109.58686 * 353.39058 * 16 15 12 30 30 H 1.08990 * 109.49959 * 185.41234 * 17 16 15 31 31 H 1.08999 * 109.49609 * 65.30943 * 17 16 15 32 32 H 1.08998 * 109.45610 * 181.38442 * 18 17 16 33 33 H 1.08997 * 109.46079 * 301.34562 * 18 17 16 34 34 H 1.09000 * 109.49738 * 58.58741 * 19 18 17 35 35 H 1.09003 * 109.49316 * 178.68106 * 19 18 17 36 36 H 1.09001 * 109.58511 * 6.60291 * 20 15 12 37 37 H 1.09004 * 109.58611 * 246.18090 * 20 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4464 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0023 11 6 5.5516 -2.6364 0.0022 12 16 6.1563 -4.3467 0.0028 13 8 5.8602 -4.9806 -1.2339 14 8 5.8602 -4.9798 1.2401 15 7 7.8060 -4.2017 0.0020 16 6 8.5512 -4.1367 -1.2625 17 6 9.6413 -5.2129 -1.2484 18 6 10.5076 -5.0393 0.0013 19 6 9.6423 -5.2117 1.2518 20 6 8.5523 -4.1355 1.2660 21 1 -0.4851 0.8400 -0.0004 22 1 3.8746 -0.6800 0.8911 23 1 3.8752 -0.6803 -0.8889 24 1 3.6586 -3.1509 -0.8875 25 1 3.6580 -3.1497 0.8924 26 1 5.9150 -2.1219 0.8918 27 1 5.9149 -2.1233 -0.8881 28 1 9.0099 -3.1534 -1.3664 29 1 7.8722 -4.3153 -2.0964 30 1 10.2625 -5.1132 -2.1383 31 1 9.1782 -6.1996 -1.2359 32 1 11.2991 -5.7887 0.0013 33 1 10.9505 -4.0434 0.0007 34 1 9.1793 -6.1984 1.2407 35 1 10.2643 -5.1112 2.1413 36 1 7.8740 -4.3132 2.1005 37 1 9.0110 -3.1520 1.3684 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020180229.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:48:53 Heat of formation + Delta-G solvation = -94.094082 kcal Electronic energy + Delta-G solvation = -18149.758684 eV Core-core repulsion = 15246.353166 eV Total energy + Delta-G solvation = -2903.405518 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.58365 -37.02032 -35.78741 -34.80382 -32.64477 -32.21252 -31.27218 -28.36915 -24.75636 -23.51641 -23.50155 -20.74868 -20.35414 -18.71309 -17.70813 -16.90265 -16.18903 -16.00292 -15.04181 -14.75137 -14.59468 -14.26670 -14.18960 -13.82998 -13.79276 -12.89845 -12.67062 -12.34905 -12.14676 -11.99792 -11.91516 -11.85380 -11.57730 -11.41523 -11.21356 -10.98401 -10.95022 -10.80484 -10.65790 -10.09751 -9.87997 -9.71974 -9.28490 -9.01162 -8.59168 -6.08785 -4.08107 0.37166 2.68951 3.26175 3.33747 3.35867 3.95874 4.23353 4.38779 4.39983 4.64066 4.66054 4.89320 4.91437 5.07487 5.12169 5.14916 5.25015 5.29573 5.47933 5.52018 5.54435 5.69471 5.76019 5.80471 5.83653 6.04053 6.10369 6.13304 6.26674 6.47653 6.66778 7.12198 7.26215 7.70674 8.47339 8.95607 9.52313 11.04547 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.038687 B = 0.004459 C = 0.004321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.578788 B = 6277.747759 C = 6478.103193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.527 4.527 8 H 0.075 0.925 9 C -0.004 4.004 10 C -0.098 4.098 11 C -0.615 4.615 12 S 2.600 3.400 13 O -0.958 6.958 14 O -0.958 6.958 15 N -1.005 6.005 16 C 0.116 3.884 17 C -0.132 4.132 18 C -0.118 4.118 19 C -0.132 4.132 20 C 0.116 3.884 21 H 0.264 0.736 22 H 0.020 0.980 23 H 0.015 0.985 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.127 0.873 27 H 0.126 0.874 28 H 0.067 0.933 29 H 0.094 0.906 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.094 0.906 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.879 -7.304 0.025 24.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.134 4.134 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.565 4.565 8 H 0.093 0.907 9 C -0.043 4.043 10 C -0.137 4.137 11 C -0.747 4.747 12 S 2.697 3.303 13 O -0.948 6.948 14 O -0.948 6.948 15 N -0.842 5.842 16 C -0.009 4.009 17 C -0.171 4.171 18 C -0.155 4.155 19 C -0.171 4.171 20 C -0.009 4.009 21 H 0.074 0.926 22 H 0.038 0.962 23 H 0.034 0.966 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.145 0.855 27 H 0.145 0.855 28 H 0.085 0.915 29 H 0.113 0.887 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.113 0.887 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 22.258 -8.018 0.029 23.658 hybrid contribution 0.532 1.696 -0.021 1.778 sum 22.791 -6.322 0.008 23.651 Atomic orbital electron populations 1.69908 1.06286 1.26992 1.50709 1.25023 0.94756 0.99169 0.94449 0.86772 0.80314 0.83614 0.78536 1.20211 1.21243 1.19083 1.21138 0.89258 0.94784 1.51341 0.90729 1.19531 0.97324 0.90743 0.96704 1.21316 0.86740 1.02919 1.02752 1.30654 1.09317 1.23638 1.11053 1.05363 0.72557 0.78182 0.74216 1.93557 1.82788 1.73186 1.45306 1.93558 1.82782 1.73219 1.45272 1.57866 1.24555 1.90130 1.11648 1.21446 0.95040 0.99094 0.85348 1.21856 0.97253 0.99749 0.98253 1.21484 0.97635 1.01857 0.94563 1.21856 0.97257 0.99748 0.98249 1.21448 0.95025 0.99095 0.85365 0.92614 0.96198 0.96624 0.91035 0.91003 0.85508 0.85517 0.91513 0.88731 0.90878 0.91348 0.91906 0.91835 0.91347 0.90879 0.88736 0.91511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.79 13.96 55.43 0.77 -27.02 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 21.47 27.47 -169.99 -4.67 16.80 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 7 C -0.53 -15.10 9.66 -34.44 -0.33 -15.43 16 8 H 0.07 2.29 7.99 -52.49 -0.42 1.87 16 9 C 0.00 -0.10 4.04 -27.88 -0.11 -0.22 16 10 C -0.10 -1.93 5.16 -26.73 -0.14 -2.07 16 11 C -0.62 -9.02 6.18 37.16 0.23 -8.79 16 12 S 2.60 37.96 5.45 -107.50 -0.59 37.38 16 13 O -0.96 -16.54 16.59 -57.54 -0.95 -17.50 16 14 O -0.96 -16.55 16.59 -57.54 -0.95 -17.50 16 15 N -1.00 -11.20 3.22 -113.52 -0.37 -11.56 16 16 C 0.12 1.09 6.43 -3.71 -0.02 1.07 16 17 C -0.13 -1.08 6.08 -26.61 -0.16 -1.25 16 18 C -0.12 -0.85 5.88 -26.68 -0.16 -1.01 16 19 C -0.13 -1.08 6.08 -26.61 -0.16 -1.25 16 20 C 0.12 1.09 6.43 -3.71 -0.02 1.07 16 21 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 22 H 0.02 0.46 7.20 -51.93 -0.37 0.08 16 23 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 24 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 25 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 26 H 0.13 1.62 8.14 -51.93 -0.42 1.20 16 27 H 0.13 1.61 8.14 -51.93 -0.42 1.19 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.09 0.95 6.86 -51.93 -0.36 0.60 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.09 0.95 6.86 -51.93 -0.36 0.60 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 307.93 15.07 4.64 4.64 Total: -1.00 -34.67 307.93 -9.23 -43.90 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -6.14 Total: -3.14 kcal Atomic # 6 Polarization: -25.02 SS G_CDS: -0.98 Total: -26.00 kcal Atomic # 7 Polarization: -38.99 SS G_CDS: 0.41 Total: -38.58 kcal Atomic # 8 Polarization: -33.09 SS G_CDS: -1.91 Total: -35.00 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Atomic # 16 Polarization: 37.96 SS G_CDS: -0.59 Total: 37.38 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -34.67 -9.23 -43.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020180229.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.191 kcal (2) G-P(sol) polarization free energy of solvation -34.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds