Wall clock time and date at job start Mon Mar 30 2020 00:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50699 * 120.00011 * 2 1 4 4 C 1.33018 * 120.00324 * 179.97438 * 2 1 3 5 5 C 1.47070 * 119.99502 * 4.58606 * 4 2 1 6 6 O 1.21622 * 120.00184 * 5.14934 * 5 4 2 7 7 N 1.34773 * 119.99393 * 185.14784 * 5 4 2 8 8 C 1.39899 * 119.99629 * 175.95406 * 7 5 4 9 9 C 1.38938 * 120.00632 * 35.26016 * 8 7 5 10 10 C 1.38002 * 119.99941 * 180.02562 * 9 8 7 11 11 C 1.38907 * 120.00106 * 359.97438 * 10 9 8 12 12 O 1.35774 * 119.99908 * 179.97438 * 11 10 9 13 13 C 1.34813 * 116.99432 * 5.65989 * 12 11 10 14 14 H 1.08002 * 120.00590 * 354.92639 * 13 12 11 15 15 C 1.38638 * 119.99814 * 174.93318 * 13 12 11 16 16 N 1.31576 * 119.99937 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 119.99898 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.46990 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.46966 * 120.00018 * 17 15 13 20 20 H 1.48497 * 109.46712 * 239.99727 * 17 15 13 21 21 C 1.38921 * 120.00812 * 0.25584 * 11 10 9 22 22 C 1.37994 * 120.00160 * 359.49028 * 21 11 10 23 23 H 1.09007 * 109.47034 * 243.65873 * 1 2 3 24 24 H 1.08998 * 109.46973 * 3.65769 * 1 2 3 25 25 H 1.08999 * 109.47263 * 123.65954 * 1 2 3 26 26 H 1.08993 * 109.47461 * 179.97438 * 3 2 1 27 27 H 1.09006 * 109.47285 * 300.00227 * 3 2 1 28 28 H 1.09003 * 109.47481 * 59.99755 * 3 2 1 29 29 H 1.07997 * 120.00337 * 184.58875 * 4 2 1 30 30 H 0.96998 * 120.00655 * 355.95343 * 7 5 4 31 31 H 1.08002 * 120.00486 * 359.97438 * 9 8 7 32 32 H 1.08001 * 119.99839 * 179.97438 * 10 9 8 33 33 H 0.96996 * 119.99750 * 180.02562 * 16 15 13 34 34 H 1.08005 * 119.99599 * 179.72342 * 21 11 10 35 35 H 1.08000 * 119.99932 * 180.25048 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1721 -1.1519 0.0005 5 6 1.4403 -2.4236 -0.1008 6 8 0.2372 -2.4203 -0.2790 7 7 2.1029 -3.5925 0.0040 8 6 1.3969 -4.8002 -0.0074 9 6 0.2617 -4.9339 -0.7973 10 6 -0.4350 -6.1252 -0.8080 11 6 -0.0010 -7.1906 -0.0295 12 8 -0.6868 -8.3624 -0.0397 13 6 -1.7087 -8.4658 -0.9129 14 1 -2.0016 -7.6115 -1.5052 15 6 -2.3837 -9.6689 -1.0506 16 7 -2.0267 -10.7098 -0.3294 17 14 -3.7993 -9.8124 -2.2611 18 1 -4.0000 -8.5095 -2.9446 19 1 -3.4851 -10.8572 -3.2684 20 1 -5.0382 -10.1845 -1.5319 21 6 1.1312 -7.0555 0.7640 22 6 1.8310 -5.8662 0.7709 23 1 -0.3633 -0.4560 0.9210 24 1 -0.3633 1.0256 -0.0656 25 1 -0.3634 -0.5696 -0.8554 26 1 3.3321 1.1060 0.0005 27 1 1.9971 1.8767 -0.8900 28 1 1.9972 1.8767 0.8900 29 1 3.2495 -1.1534 0.0753 30 1 3.0693 -3.5965 0.0872 31 1 -0.0760 -4.1055 -1.4023 32 1 -1.3176 -6.2290 -1.4217 33 1 -2.4988 -11.5516 -0.4260 34 1 1.4659 -7.8826 1.3726 35 1 2.7136 -5.7625 1.3847 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032497614.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:40 Heat of formation + Delta-G solvation = -21.602642 kcal Electronic energy + Delta-G solvation = -18441.343320 eV Core-core repulsion = 15405.637315 eV Total energy + Delta-G solvation = -3035.706005 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.14010 -38.69943 -36.77661 -35.34916 -33.87837 -32.15759 -30.17442 -28.98417 -27.92890 -27.05123 -25.21492 -22.54711 -21.86191 -20.34715 -18.96354 -17.92468 -17.23212 -16.83903 -16.18766 -15.04775 -14.50185 -14.46629 -14.28319 -14.16681 -13.63838 -13.58388 -13.51344 -12.84460 -12.75302 -12.44634 -12.35653 -11.91967 -11.72072 -11.69648 -11.48968 -11.42088 -11.01114 -10.68629 -10.39777 -9.63422 -9.49877 -9.21197 -9.07101 -8.65601 -8.16550 -6.88403 -6.42047 -3.99431 1.27018 2.20268 2.32402 3.14735 3.17046 3.22786 3.40004 3.50134 4.00200 4.58237 4.64853 4.67418 5.07981 5.12891 5.22663 5.24146 5.29346 5.52724 5.56673 5.71344 5.78788 5.80639 5.98895 6.17518 6.24148 6.33544 6.40314 6.47442 6.77897 6.91318 7.06429 7.15248 7.34586 7.47581 7.78045 7.84954 8.03543 8.48906 9.04030 9.74000 10.76127 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.035755 B = 0.003848 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.910486 B = 7274.061579 C = 7925.224114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.036 4.036 3 C -0.125 4.125 4 C -0.233 4.233 5 C 0.536 3.464 6 O -0.529 6.529 7 N -0.658 5.658 8 C 0.036 3.964 9 C -0.064 4.064 10 C -0.221 4.221 11 C 0.146 3.854 12 O -0.178 6.178 13 C -0.389 4.389 14 H 0.093 0.907 15 C 0.038 3.962 16 N -0.864 5.864 17 Si 0.941 3.059 18 H -0.266 1.266 19 H -0.276 1.276 20 H -0.276 1.276 21 C -0.178 4.178 22 C -0.094 4.094 23 H 0.077 0.923 24 H 0.050 0.950 25 H 0.094 0.906 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.124 0.876 30 H 0.401 0.599 31 H 0.125 0.875 32 H 0.130 0.870 33 H 0.269 0.731 34 H 0.121 0.879 35 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.100 18.519 0.098 20.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.038 4.038 3 C -0.182 4.182 4 C -0.254 4.254 5 C 0.327 3.673 6 O -0.408 6.408 7 N -0.302 5.302 8 C -0.057 4.057 9 C -0.084 4.084 10 C -0.241 4.241 11 C 0.092 3.908 12 O -0.081 6.081 13 C -0.466 4.466 14 H 0.110 0.890 15 C -0.166 4.166 16 N -0.499 5.499 17 Si 0.765 3.235 18 H -0.190 1.190 19 H -0.202 1.202 20 H -0.202 1.202 21 C -0.198 4.198 22 C -0.114 4.114 23 H 0.096 0.904 24 H 0.069 0.931 25 H 0.112 0.888 26 H 0.085 0.915 27 H 0.095 0.905 28 H 0.093 0.907 29 H 0.142 0.858 30 H 0.235 0.765 31 H 0.143 0.857 32 H 0.148 0.852 33 H 0.079 0.921 34 H 0.139 0.861 35 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 8.198 18.085 0.142 19.857 hybrid contribution -0.061 -0.109 -0.497 0.513 sum 8.136 17.977 -0.355 19.736 Atomic orbital electron populations 1.21097 0.90782 1.01205 1.04813 1.22556 0.96997 0.94352 0.89902 1.21006 0.99751 0.94573 1.02848 1.22381 0.99925 0.91999 1.11097 1.18596 0.87333 0.84099 0.77290 1.90763 1.14480 1.87169 1.48377 1.43121 1.09890 1.04482 1.72695 1.17270 0.98498 0.86112 1.03803 1.20855 0.94186 0.96782 0.96596 1.21112 1.03687 0.93381 1.05880 1.19409 0.90947 0.86984 0.93456 1.83972 1.41059 1.29231 1.53882 1.21389 1.08366 0.98426 1.18402 0.88984 1.25285 0.98959 0.94238 0.98079 1.70057 1.39962 1.01579 1.38299 0.85648 0.79681 0.78842 0.79291 1.19048 1.20162 1.20161 1.19993 0.96580 0.98306 1.04933 1.20371 1.00102 0.92664 0.98312 0.90437 0.93079 0.88757 0.91496 0.90499 0.90699 0.85789 0.76482 0.85731 0.85243 0.92116 0.86094 0.86781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.38 8.40 36.01 0.30 -1.08 16 2 C -0.04 -0.36 6.11 -101.16 -0.62 -0.98 16 3 C -0.13 -0.81 10.04 36.01 0.36 -0.45 16 4 C -0.23 -2.51 9.63 -37.81 -0.36 -2.88 16 5 C 0.54 7.95 7.54 -12.68 -0.10 7.85 16 6 O -0.53 -9.60 10.61 5.26 0.06 -9.54 16 7 N -0.66 -9.45 5.33 -10.90 -0.06 -9.51 16 8 C 0.04 0.66 6.30 -83.65 -0.53 0.13 16 9 C -0.06 -1.33 8.68 -39.41 -0.34 -1.67 16 10 C -0.22 -5.10 9.16 -39.42 -0.36 -5.46 16 11 C 0.15 3.61 6.65 -39.08 -0.26 3.35 16 12 O -0.18 -5.16 9.75 0.02 0.00 -5.16 16 13 C -0.39 -11.10 9.48 30.88 0.29 -10.81 16 14 H 0.09 2.46 5.20 -52.49 -0.27 2.18 16 15 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 16 N -0.86 -25.62 13.67 55.48 0.76 -24.86 16 17 Si 0.94 20.92 29.55 -169.99 -5.02 15.90 16 18 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 19 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 20 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 21 C -0.18 -3.79 9.98 -39.42 -0.39 -4.19 16 22 C -0.09 -1.69 9.96 -39.41 -0.39 -2.09 16 23 H 0.08 0.98 7.82 -51.93 -0.41 0.57 16 24 H 0.05 0.45 8.00 -51.93 -0.42 0.03 16 25 H 0.09 1.26 6.54 -51.93 -0.34 0.92 16 26 H 0.07 0.36 7.81 -51.93 -0.41 -0.04 16 27 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.12 0.97 7.87 -52.49 -0.41 0.56 16 30 H 0.40 4.22 8.80 -40.82 -0.36 3.86 16 31 H 0.12 2.55 6.25 -52.49 -0.33 2.22 16 32 H 0.13 3.01 5.63 -52.49 -0.30 2.71 16 33 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 34 H 0.12 2.44 8.06 -52.48 -0.42 2.02 16 35 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 302.33 15.07 4.56 4.56 Total: -1.00 -32.94 302.33 -6.27 -39.21 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -4.06 Total: 6.70 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: -2.49 Total: -17.29 kcal Atomic # 7 Polarization: -35.07 SS G_CDS: 0.70 Total: -34.37 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: 0.06 Total: -14.70 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.94 -6.27 -39.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032497614.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.604 kcal (2) G-P(sol) polarization free energy of solvation -32.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds