Wall clock time and date at job start Sun Mar 29 2020 23:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30528 * 1 3 3 Si 1.86794 * 120.00347 * 2 1 4 4 H 1.48506 * 109.47191 * 269.99704 * 3 2 1 5 5 H 1.48498 * 109.47130 * 29.99847 * 3 2 1 6 6 H 1.48500 * 109.47331 * 149.99720 * 3 2 1 7 7 C 1.40358 * 119.99649 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99826 * 180.02562 * 7 2 1 9 9 C 1.41685 * 119.99802 * 0.02562 * 7 2 1 10 10 O 1.21857 * 120.00680 * 0.02562 * 9 7 2 11 11 C 1.47473 * 119.99769 * 179.97438 * 9 7 2 12 12 C 1.40052 * 120.06907 * 180.02562 * 11 9 7 13 13 C 1.36523 * 119.92501 * 179.97438 * 12 11 9 14 14 C 1.39453 * 120.07608 * 359.96818 * 13 12 11 15 15 N 1.38779 * 119.93423 * 180.02562 * 14 13 12 16 16 C 1.47016 * 111.00515 * 180.02562 * 15 14 13 17 17 C 1.53096 * 109.25942 * 177.60645 * 16 15 14 18 18 O 1.43012 * 109.25705 * 56.84534 * 17 16 15 19 19 C 1.43012 * 113.74365 * 301.32719 * 18 17 16 20 20 C 1.47010 * 111.00057 * 56.36095 * 15 14 13 21 21 C 1.39459 * 120.13568 * 0.28471 * 14 13 12 22 22 C 1.36526 * 120.07509 * 359.47976 * 21 14 13 23 23 H 0.97008 * 119.99402 * 0.02562 * 1 2 3 24 24 H 1.07995 * 120.03312 * 359.95106 * 12 11 9 25 25 H 1.08000 * 119.96069 * 180.02562 * 13 12 11 26 26 H 1.08999 * 109.50851 * 57.66322 * 16 15 14 27 27 H 1.09004 * 109.50278 * 297.54086 * 16 15 14 28 28 H 1.09001 * 109.50487 * 176.77808 * 17 16 15 29 29 H 1.08996 * 109.50808 * 296.86767 * 17 16 15 30 30 H 1.08995 * 109.51360 * 178.60952 * 19 18 17 31 31 H 1.09007 * 109.50262 * 298.74161 * 19 18 17 32 32 H 1.09008 * 109.50529 * 62.46467 * 20 15 14 33 33 H 1.08995 * 109.51144 * 302.33056 * 20 15 14 34 34 H 1.08004 * 119.95763 * 179.72629 * 21 14 13 35 35 H 1.07996 * 120.03960 * 180.25814 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3053 0.0000 0.0000 3 14 2.2394 1.6176 0.0000 4 1 2.4870 2.0463 -1.4001 5 1 1.4369 2.6526 0.7000 6 1 3.5369 1.4401 0.7001 7 6 2.0070 -1.2156 0.0005 8 1 3.0870 -1.2156 0.0010 9 6 1.2985 -2.4425 0.0005 10 8 0.0799 -2.4426 -0.0004 11 6 2.0358 -3.7197 0.0005 12 6 1.3369 -4.9334 0.0000 13 6 2.0224 -6.1141 -0.0005 14 6 3.4169 -6.1125 -0.0012 15 7 4.1108 -7.3144 -0.0023 16 6 5.5629 -7.0845 -0.0022 17 6 6.2874 -8.4319 0.0569 18 8 5.8675 -9.2420 -1.0442 19 6 4.4587 -9.4866 -1.0749 20 6 3.7153 -8.1501 -1.1452 21 6 4.1157 -4.9056 0.0047 22 6 3.4362 -3.7215 0.0003 23 1 -0.4850 0.8402 -0.0004 24 1 0.2569 -4.9353 0.0004 25 1 1.4841 -7.0503 -0.0014 26 1 5.8366 -6.4856 0.8663 27 1 5.8480 -6.5576 -0.9129 28 1 7.3637 -8.2692 -0.0005 29 1 6.0448 -8.9349 0.9930 30 1 4.2124 -10.0867 -1.9508 31 1 4.1623 -10.0205 -0.1720 32 1 3.9705 -7.6404 -2.0744 33 1 2.6406 -8.3289 -1.1108 34 1 5.1958 -4.9078 0.0086 35 1 3.9779 -2.7873 0.0007 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032911367.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:35:28 Heat of formation + Delta-G solvation = -47.342015 kcal Electronic energy + Delta-G solvation = -18953.648082 eV Core-core repulsion = 15916.825934 eV Total energy + Delta-G solvation = -3036.822148 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.36565 -38.41311 -36.62230 -34.94491 -32.70303 -31.77412 -30.45917 -29.70807 -27.37675 -25.97709 -24.52202 -22.42120 -21.39316 -20.73638 -19.37337 -17.55360 -16.66416 -16.29450 -15.68093 -15.34308 -15.32755 -14.96894 -14.71781 -14.14670 -13.74814 -13.49431 -13.14208 -12.73834 -12.54195 -12.26779 -11.78337 -11.72548 -11.54800 -11.46133 -11.20904 -10.98945 -10.77951 -10.63191 -10.36783 -10.01565 -9.94916 -9.24072 -8.96298 -8.43761 -7.49615 -7.31689 -6.32361 -4.92697 1.71617 2.08912 3.03009 3.10979 3.14237 3.57050 3.72122 3.98553 4.06131 4.62489 4.67827 4.80528 4.89871 4.96676 5.11657 5.29586 5.39006 5.43729 5.48064 5.61790 5.64107 5.75677 5.80283 5.93929 6.02864 6.16212 6.26547 6.56991 6.67550 6.89544 7.04079 7.11602 7.23724 7.24057 7.39238 7.74503 8.01386 8.76747 8.82677 10.29198 10.51502 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.041268 B = 0.004233 C = 0.003909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.332170 B = 6612.765889 C = 7160.953111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.734 5.734 2 C 0.079 3.921 3 Si 0.906 3.094 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.516 4.516 8 H 0.074 0.926 9 C 0.386 3.614 10 O -0.544 6.544 11 C -0.121 4.121 12 C -0.072 4.072 13 C -0.147 4.147 14 C 0.087 3.913 15 N -0.486 5.486 16 C 0.014 3.986 17 C 0.063 3.937 18 O -0.387 6.387 19 C 0.063 3.937 20 C 0.019 3.981 21 C -0.180 4.180 22 C -0.071 4.071 23 H 0.274 0.726 24 H 0.127 0.873 25 H 0.115 0.885 26 H 0.093 0.907 27 H 0.054 0.946 28 H 0.100 0.900 29 H 0.060 0.940 30 H 0.100 0.900 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.092 0.908 34 H 0.118 0.882 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.749 -13.087 -0.885 16.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.363 5.363 2 C -0.144 4.144 3 Si 0.730 3.270 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.547 4.547 8 H 0.092 0.908 9 C 0.282 3.718 10 O -0.434 6.434 11 C -0.123 4.123 12 C -0.091 4.091 13 C -0.167 4.167 14 C -0.009 4.009 15 N -0.203 5.203 16 C -0.114 4.114 17 C -0.014 4.014 18 O -0.305 6.305 19 C -0.014 4.014 20 C -0.107 4.107 21 C -0.200 4.200 22 C -0.090 4.090 23 H 0.085 0.915 24 H 0.145 0.855 25 H 0.133 0.867 26 H 0.111 0.889 27 H 0.072 0.928 28 H 0.118 0.882 29 H 0.078 0.922 30 H 0.118 0.882 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.111 0.889 34 H 0.136 0.864 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 10.031 -13.441 -0.603 16.783 hybrid contribution 0.576 1.335 -0.359 1.498 sum 10.607 -12.106 -0.962 16.124 Atomic orbital electron populations 1.69964 1.07563 1.28102 1.30662 1.26018 0.94644 1.01027 0.92741 0.86376 0.80473 0.80932 0.79203 1.19378 1.20118 1.18503 1.20934 0.94924 0.91695 1.47181 0.90815 1.18070 0.88477 0.85957 0.79276 1.90511 1.15036 1.88589 1.49269 1.21880 0.94101 0.97749 0.98534 1.21028 1.00464 0.91294 0.96283 1.20388 0.91883 0.98178 1.06282 1.18861 0.92927 0.88055 1.01105 1.59100 1.05302 1.15272 1.40579 1.22944 0.87315 0.98346 1.02762 1.22714 0.98948 0.89796 0.89942 1.87974 1.23091 1.70888 1.48565 1.22711 0.80719 0.95386 1.02570 1.22932 1.01543 0.94392 0.91794 1.20965 0.99265 0.92221 1.07597 1.21171 0.94213 0.97372 0.96221 0.91478 0.85548 0.86705 0.88858 0.92759 0.88233 0.92210 0.88226 0.92176 0.93069 0.88940 0.86447 0.85288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -21.15 11.73 55.57 0.65 -20.49 16 2 C 0.08 2.12 5.50 -17.31 -0.10 2.03 16 3 Si 0.91 19.17 29.56 -169.99 -5.03 14.14 16 4 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 5 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 6 H -0.26 -5.34 7.11 56.52 0.40 -4.93 16 7 C -0.52 -14.18 8.85 -37.47 -0.33 -14.52 16 8 H 0.07 1.83 6.01 -52.49 -0.32 1.51 16 9 C 0.39 11.00 6.90 -34.51 -0.24 10.76 16 10 O -0.54 -17.41 14.88 5.05 0.08 -17.33 16 11 C -0.12 -2.86 5.89 -104.78 -0.62 -3.47 16 12 C -0.07 -1.53 9.55 -39.52 -0.38 -1.91 16 13 C -0.15 -2.61 9.13 -39.75 -0.36 -2.98 16 14 C 0.09 1.46 5.64 -83.81 -0.47 0.98 16 15 N -0.49 -6.70 4.75 -170.74 -0.81 -7.51 16 16 C 0.01 0.16 4.32 -3.71 -0.02 0.14 16 17 C 0.06 0.62 7.01 37.21 0.26 0.89 16 18 O -0.39 -4.46 10.83 -35.23 -0.38 -4.84 16 19 C 0.06 0.63 7.01 37.21 0.26 0.89 16 20 C 0.02 0.23 5.40 -3.71 -0.02 0.21 16 21 C -0.18 -3.10 8.74 -39.74 -0.35 -3.44 16 22 C -0.07 -1.44 9.38 -39.52 -0.37 -1.81 16 23 H 0.27 7.06 8.29 -40.82 -0.34 6.72 16 24 H 0.13 2.76 7.64 -52.49 -0.40 2.36 16 25 H 0.11 1.75 7.18 -52.49 -0.38 1.37 16 26 H 0.09 1.03 7.19 -51.93 -0.37 0.66 16 27 H 0.05 0.66 7.53 -51.93 -0.39 0.27 16 28 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.57 8.14 -51.92 -0.42 0.14 16 32 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 33 H 0.09 1.03 6.83 -51.93 -0.35 0.68 16 34 H 0.12 1.69 5.78 -52.48 -0.30 1.39 16 35 H 0.13 2.52 6.19 -52.49 -0.32 2.20 16 LS Contribution 289.73 15.07 4.37 4.37 Total: -1.00 -32.96 289.73 -7.94 -40.90 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -4.09 Total: 2.99 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: -2.73 Total: -12.23 kcal Atomic # 7 Polarization: -27.85 SS G_CDS: -0.16 Total: -28.01 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: -0.31 Total: -22.17 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.03 Total: 14.14 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -32.96 -7.94 -40.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032911367.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.442 kcal (2) G-P(sol) polarization free energy of solvation -32.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds