Wall clock time and date at job start Mon Mar 30 2020 00:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.46913 * 2 1 4 4 H 1.09001 * 109.47601 * 177.53468 * 3 2 1 5 5 C 1.50706 * 109.47127 * 57.53605 * 3 2 1 6 6 H 1.07993 * 119.99987 * 239.99507 * 5 3 2 7 7 C 1.37877 * 119.99623 * 60.00090 * 5 3 2 8 8 N 1.31512 * 120.00286 * 0.02562 * 7 5 3 9 9 Si 1.86808 * 119.99610 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46849 * 59.99961 * 9 7 5 11 11 H 1.48504 * 109.46887 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.46954 * 299.99969 * 9 7 5 13 13 N 1.46901 * 109.47485 * 297.53730 * 3 2 1 14 14 C 1.46897 * 110.99678 * 274.35490 * 13 3 2 15 15 C 1.52588 * 109.24074 * 154.35665 * 14 13 3 16 16 C 1.53039 * 109.98837 * 190.28210 * 15 14 13 17 17 S 1.81665 * 108.99970 * 296.35537 * 16 15 14 18 18 O 1.42102 * 108.66421 * 299.96560 * 17 16 15 19 19 O 1.42097 * 108.75083 * 168.65672 * 17 16 15 20 20 C 1.81675 * 101.30741 * 54.29554 * 17 16 15 21 21 C 1.52588 * 109.24217 * 275.50749 * 14 13 3 22 22 H 1.08994 * 109.47276 * 294.54425 * 1 2 3 23 23 H 1.08994 * 109.47179 * 54.54956 * 1 2 3 24 24 H 1.09007 * 109.46916 * 174.54519 * 1 2 3 25 25 H 1.08994 * 109.47505 * 240.00042 * 2 1 3 26 26 H 1.09004 * 109.47058 * 119.99970 * 2 1 3 27 27 H 0.97005 * 120.00118 * 180.02562 * 8 7 5 28 28 H 1.00903 * 111.00289 * 150.39743 * 13 3 2 29 29 H 1.08999 * 109.20763 * 34.93377 * 14 13 3 30 30 H 1.09002 * 109.38953 * 310.44294 * 15 14 13 31 31 H 1.09002 * 109.38599 * 70.12902 * 15 14 13 32 32 H 1.09006 * 109.54707 * 56.20785 * 16 15 14 33 33 H 1.08996 * 109.55354 * 176.49562 * 16 15 14 34 34 H 1.09001 * 109.54431 * 185.84933 * 20 17 16 35 35 H 1.09000 * 109.62882 * 65.60758 * 20 17 16 36 36 H 1.08993 * 109.38666 * 289.87411 * 21 14 13 37 37 H 1.09006 * 109.38178 * 49.66866 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1291 1.4429 0.0442 5 6 1.4883 2.1703 1.1988 6 1 0.8723 3.0467 1.0621 7 6 1.7703 1.7173 2.4702 8 7 2.5210 0.6504 2.6367 9 14 1.0871 2.6199 3.9562 10 1 -0.3967 2.6200 3.8962 11 1 1.5318 1.9370 5.1976 12 1 1.5826 4.0197 3.9559 13 7 1.5995 2.1176 -1.2281 14 6 2.5370 1.8682 -2.3311 15 6 1.7974 2.0002 -3.6592 16 6 2.6820 1.4982 -4.8027 17 16 4.1509 2.5602 -4.9241 18 8 3.7289 3.8922 -5.1826 19 8 5.0879 1.9457 -5.7980 20 6 4.7947 2.4731 -3.2275 21 6 3.6844 2.8710 -2.2524 22 1 -0.3633 0.4269 0.9347 23 1 -0.3633 0.5960 -0.8371 24 1 -0.3633 -1.0231 -0.0977 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.7191 0.3315 3.5311 28 1 1.4784 3.1073 -1.0731 29 1 2.9361 0.8579 -2.2410 30 1 0.8820 1.4095 -3.6239 31 1 1.5446 3.0466 -3.8301 32 1 2.9896 0.4718 -4.6023 33 1 2.1252 1.5374 -5.7389 34 1 5.6362 3.1577 -3.1212 35 1 5.1223 1.4561 -3.0119 36 1 3.3154 3.8638 -2.5098 37 1 4.0836 2.8851 -1.2382 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036332065.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:55 Heat of formation + Delta-G solvation = -83.493247 kcal Electronic energy + Delta-G solvation = -18708.298389 eV Core-core repulsion = 15805.352557 eV Total energy + Delta-G solvation = -2902.945832 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.21553 -36.92402 -36.02191 -34.95295 -31.97298 -31.74753 -30.32107 -26.92484 -24.85754 -23.53174 -23.18847 -20.68688 -19.07820 -18.82536 -17.03575 -16.32042 -16.30989 -15.64611 -15.07815 -14.59422 -14.46005 -13.99786 -13.61950 -13.23331 -12.85660 -12.75047 -12.39485 -12.15161 -12.00896 -11.92081 -11.83738 -11.73639 -11.41135 -10.99721 -10.87992 -10.82711 -10.55762 -10.38654 -10.08191 -9.96296 -9.78236 -9.46182 -8.89070 -8.55892 -7.42707 -6.10235 -4.15842 0.04252 2.66071 3.25602 3.30998 3.33434 3.63727 3.93367 4.33259 4.59064 4.62600 4.72539 4.75794 5.08659 5.19700 5.23052 5.34034 5.60997 5.67224 5.77799 5.90977 6.05595 6.33215 6.36593 6.45312 6.61832 6.77347 7.13869 7.18987 7.40032 7.64220 7.70298 7.74250 8.14561 8.25554 8.53210 8.92187 9.49494 10.95727 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.035887 B = 0.005187 C = 0.004953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.037717 B = 5396.794101 C = 5651.632217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.103 4.103 3 C 0.214 3.786 4 H 0.004 0.996 5 C -0.516 4.516 6 H 0.059 0.941 7 C 0.065 3.935 8 N -0.889 5.889 9 Si 0.893 3.107 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.675 5.675 14 C 0.069 3.931 15 C -0.099 4.099 16 C -0.596 4.596 17 S 2.412 3.588 18 O -0.942 6.942 19 O -0.954 6.954 20 C -0.594 4.594 21 C -0.141 4.141 22 H 0.052 0.948 23 H 0.047 0.953 24 H 0.012 0.988 25 H 0.010 0.990 26 H 0.085 0.915 27 H 0.262 0.738 28 H 0.336 0.664 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.131 0.869 33 H 0.131 0.869 34 H 0.129 0.871 35 H 0.131 0.869 36 H 0.081 0.919 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.586 1.012 -10.924 11.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.142 4.142 3 C 0.107 3.893 4 H 0.022 0.978 5 C -0.554 4.554 6 H 0.077 0.923 7 C -0.137 4.137 8 N -0.527 5.527 9 Si 0.721 3.279 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.204 1.204 13 N -0.305 5.305 14 C -0.042 4.042 15 C -0.138 4.138 16 C -0.727 4.727 17 S 2.595 3.405 18 O -0.939 6.939 19 O -0.951 6.951 20 C -0.725 4.725 21 C -0.181 4.181 22 H 0.071 0.929 23 H 0.066 0.934 24 H 0.031 0.969 25 H 0.028 0.972 26 H 0.104 0.896 27 H 0.072 0.928 28 H 0.154 0.846 29 H 0.099 0.901 30 H 0.113 0.887 31 H 0.097 0.903 32 H 0.150 0.850 33 H 0.149 0.851 34 H 0.147 0.853 35 H 0.150 0.850 36 H 0.100 0.900 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.562 0.843 -11.672 11.806 hybrid contribution 0.255 0.426 1.822 1.889 sum 1.817 1.269 -9.850 10.096 Atomic orbital electron populations 1.21444 0.97432 0.97167 1.01670 1.21454 0.95216 0.98195 0.99306 1.19180 0.93577 0.91613 0.84918 0.97797 1.21125 1.31914 1.12088 0.90307 0.92270 1.24869 0.95006 0.94974 0.98865 1.69866 1.37342 1.23117 1.22391 0.86638 0.79518 0.79758 0.81965 1.20182 1.21362 1.20363 1.60770 1.45966 1.16418 1.07311 1.21703 0.90839 0.98851 0.92837 1.21317 0.99328 1.02692 0.90498 1.30162 1.18849 1.15622 1.08070 1.08124 0.77787 0.76608 0.77942 1.93568 1.82310 1.34253 1.83773 1.93566 1.60755 1.78433 1.62387 1.30143 1.09625 1.11219 1.21470 1.22182 0.94312 1.00974 1.00675 0.92876 0.93412 0.96875 0.97176 0.89629 0.92844 0.84615 0.90063 0.88688 0.90278 0.85016 0.85104 0.85270 0.85033 0.90031 0.88863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.53 9.45 37.16 0.35 -2.18 16 2 C -0.10 -2.32 5.55 -26.73 -0.15 -2.46 16 3 C 0.21 4.81 2.05 -68.86 -0.14 4.67 16 4 H 0.00 0.11 7.05 -51.93 -0.37 -0.26 16 5 C -0.52 -12.90 7.31 -34.44 -0.25 -13.15 16 6 H 0.06 1.47 7.61 -52.49 -0.40 1.07 16 7 C 0.07 1.68 5.30 -17.82 -0.09 1.59 16 8 N -0.89 -23.95 11.35 55.43 0.63 -23.32 16 9 Si 0.89 20.34 29.54 -169.99 -5.02 15.32 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 12 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 13 N -0.68 -12.29 5.28 -101.40 -0.54 -12.82 16 14 C 0.07 1.01 2.04 -68.14 -0.14 0.87 16 15 C -0.10 -1.20 5.32 -26.92 -0.14 -1.34 16 16 C -0.60 -5.81 6.35 37.18 0.24 -5.58 16 17 S 2.41 27.59 5.30 -107.50 -0.57 27.02 16 18 O -0.94 -13.74 17.94 -57.82 -1.04 -14.77 16 19 O -0.95 -13.72 18.11 -57.82 -1.05 -14.77 16 20 C -0.59 -6.44 6.35 37.18 0.24 -6.20 16 21 C -0.14 -1.89 4.98 -26.92 -0.13 -2.02 16 22 H 0.05 1.22 7.36 -51.93 -0.38 0.84 16 23 H 0.05 0.96 7.52 -51.93 -0.39 0.57 16 24 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 25 H 0.01 0.20 7.44 -51.93 -0.39 -0.19 16 26 H 0.09 2.17 6.14 -51.93 -0.32 1.85 16 27 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 28 H 0.34 6.02 7.96 -39.29 -0.31 5.71 16 29 H 0.08 1.21 7.08 -51.93 -0.37 0.85 16 30 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.08 0.92 8.01 -51.93 -0.42 0.50 16 32 H 0.13 1.09 8.14 -51.92 -0.42 0.66 16 33 H 0.13 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.13 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.13 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.08 1.03 8.01 -51.93 -0.42 0.61 16 37 H 0.09 1.43 7.28 -51.93 -0.38 1.05 16 LS Contribution 302.15 15.07 4.55 4.55 Total: -1.00 -30.92 302.15 -9.06 -39.98 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -5.80 Total: 4.63 kcal Atomic # 6 Polarization: -25.58 SS G_CDS: -0.23 Total: -25.81 kcal Atomic # 7 Polarization: -36.24 SS G_CDS: 0.09 Total: -36.15 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -2.08 Total: -29.54 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Atomic # 16 Polarization: 27.59 SS G_CDS: -0.57 Total: 27.02 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.92 -9.06 -39.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036332065.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.515 kcal (2) G-P(sol) polarization free energy of solvation -30.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds