Wall clock time and date at job start Sun Mar 29 2020 23:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00005 * 2 1 4 4 H 1.48506 * 109.47268 * 269.99685 * 3 2 1 5 5 H 1.48496 * 109.47397 * 29.99859 * 3 2 1 6 6 H 1.48502 * 109.47255 * 149.99716 * 3 2 1 7 7 C 1.37879 * 119.99920 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99984 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99918 * 180.02562 * 7 2 1 10 10 N 1.46902 * 109.47378 * 185.06922 * 9 7 2 11 11 C 1.46895 * 111.00032 * 195.66338 * 10 9 7 12 12 C 1.50699 * 109.47154 * 75.66133 * 11 10 9 13 13 C 1.34515 * 125.79435 * 89.99514 * 12 11 10 14 14 C 1.41378 * 106.84359 * 180.02562 * 13 12 11 15 15 C 1.34510 * 106.84166 * 359.97438 * 14 13 12 16 16 O 1.34304 * 125.78867 * 269.69338 * 12 11 10 17 17 C 1.46902 * 110.99994 * 71.70667 * 10 9 7 18 18 C 1.50694 * 109.47215 * 190.00326 * 17 10 9 19 19 C 1.34518 * 125.79147 * 90.00100 * 18 17 10 20 20 C 1.41384 * 106.84282 * 180.02562 * 19 18 17 21 21 C 1.34513 * 106.83833 * 359.97438 * 20 19 18 22 22 O 1.34301 * 108.42248 * 359.73675 * 21 20 19 23 23 H 0.96994 * 119.99676 * 0.02562 * 1 2 3 24 24 H 1.08993 * 109.47636 * 65.06308 * 9 7 2 25 25 H 1.09004 * 109.46765 * 305.06669 * 9 7 2 26 26 H 1.08997 * 109.47345 * 315.65995 * 11 10 9 27 27 H 1.08996 * 109.47157 * 195.65735 * 11 10 9 28 28 H 1.08000 * 126.57716 * 0.03897 * 13 12 11 29 29 H 1.08008 * 126.57710 * 179.97438 * 14 13 12 30 30 H 1.08003 * 125.78801 * 179.97438 * 15 14 13 31 31 H 1.09004 * 109.46904 * 310.00351 * 17 10 9 32 32 H 1.08999 * 109.46871 * 70.00424 * 17 10 9 33 33 H 1.08003 * 126.57372 * 0.03541 * 19 18 17 34 34 H 1.07996 * 126.58131 * 179.97438 * 20 19 18 35 35 H 1.08004 * 125.78839 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0000 10 7 4.0013 -2.5736 -0.1231 11 6 5.4216 -2.6624 0.2413 12 6 5.5613 -2.5884 1.7399 13 6 5.5505 -3.6359 2.5838 14 6 5.7091 -3.1132 3.8877 15 6 5.8080 -1.7776 3.7628 16 8 5.7235 -1.4659 2.4592 17 6 3.7715 -3.0949 -1.4771 18 6 4.0557 -4.5747 -1.5005 19 6 3.1630 -5.5511 -1.2576 20 6 3.8533 -6.7784 -1.3852 21 6 5.1265 -6.4784 -1.6991 22 8 5.2418 -5.1425 -1.7736 23 1 -0.4849 0.8400 -0.0004 24 1 3.8746 -0.7615 0.9322 25 1 3.8752 -0.6031 -0.8406 26 1 5.9663 -1.8362 -0.2156 27 1 5.8297 -3.6081 -0.1154 28 1 5.4417 -4.6767 2.3164 29 1 5.7442 -3.6780 4.8077 30 1 5.9373 -1.0753 4.5731 31 1 2.7343 -2.9196 -1.7627 32 1 4.4326 -2.5868 -2.1791 33 1 2.1191 -5.4223 -1.0122 34 1 3.4381 -7.7669 -1.2555 35 1 5.9203 -7.1913 -1.8668 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053137900.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:51:03 Heat of formation + Delta-G solvation = 44.173267 kcal Electronic energy + Delta-G solvation = -19424.179876 eV Core-core repulsion = 16391.326129 eV Total energy + Delta-G solvation = -3032.853748 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.28092 -42.09440 -37.04646 -32.74347 -32.72304 -32.45721 -30.92299 -29.80385 -27.50576 -25.76462 -23.65884 -21.44459 -21.41133 -20.91901 -20.16853 -19.65111 -17.15146 -17.04962 -16.74473 -15.97276 -15.64883 -14.78985 -14.61334 -14.37861 -13.87566 -13.68587 -12.73258 -12.51686 -12.48220 -12.41069 -12.38117 -12.24767 -11.97064 -11.81635 -11.48876 -11.19677 -10.67470 -10.46958 -9.89945 -9.61139 -9.51502 -9.37190 -8.60168 -8.24581 -8.03242 -7.59606 -6.08084 -4.06019 1.97645 2.16555 2.92598 3.03545 3.25996 3.26756 3.35106 3.39200 3.43562 4.40179 4.79699 5.00266 5.11695 5.23899 5.31203 5.32806 5.35955 5.40362 5.64302 5.76361 5.84856 6.07364 6.15973 6.18391 6.30422 6.31812 6.44032 6.49571 6.72469 6.77915 6.82853 6.90552 7.44694 7.53079 7.56484 7.72119 7.83021 8.58689 9.00991 9.53396 11.04739 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.013663 B = 0.008221 C = 0.005728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.765124 B = 3405.267720 C = 4887.401976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.071 3.929 3 Si 0.870 3.130 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.511 4.511 8 H 0.083 0.917 9 C 0.161 3.839 10 N -0.517 5.517 11 C 0.125 3.875 12 C 0.017 3.983 13 C -0.202 4.202 14 C -0.216 4.216 15 C -0.049 4.049 16 O -0.174 6.174 17 C 0.141 3.859 18 C 0.004 3.996 19 C -0.194 4.194 20 C -0.212 4.212 21 C -0.058 4.058 22 O -0.184 6.184 23 H 0.264 0.736 24 H 0.037 0.963 25 H -0.009 1.009 26 H 0.045 0.955 27 H 0.097 0.903 28 H 0.142 0.858 29 H 0.142 0.858 30 H 0.196 0.804 31 H 0.124 0.876 32 H 0.042 0.958 33 H 0.149 0.851 34 H 0.143 0.857 35 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.261 -9.016 0.484 15.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.131 4.131 3 Si 0.697 3.303 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.549 4.549 8 H 0.101 0.899 9 C 0.036 3.964 10 N -0.242 5.242 11 C -0.003 4.003 12 C -0.033 4.033 13 C -0.222 4.222 14 C -0.235 4.235 15 C -0.117 4.117 16 O -0.070 6.070 17 C 0.013 3.987 18 C -0.046 4.046 19 C -0.214 4.214 20 C -0.231 4.231 21 C -0.125 4.125 22 O -0.081 6.081 23 H 0.074 0.926 24 H 0.055 0.945 25 H 0.008 0.992 26 H 0.063 0.937 27 H 0.115 0.885 28 H 0.160 0.840 29 H 0.160 0.840 30 H 0.213 0.787 31 H 0.142 0.858 32 H 0.060 0.940 33 H 0.167 0.833 34 H 0.161 0.839 35 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 12.102 -8.704 0.606 14.919 hybrid contribution 0.557 0.959 -0.134 1.117 sum 12.659 -7.744 0.472 14.847 Atomic orbital electron populations 1.69885 1.06083 1.26884 1.50749 1.24866 0.94709 0.98747 0.94736 0.86931 0.80596 0.84191 0.78557 1.20236 1.21070 1.19017 1.20984 0.88385 0.94843 1.50722 0.89901 1.20299 0.97472 0.82643 0.95992 1.61970 1.13213 1.25327 1.23710 1.20570 0.91622 1.01973 0.86105 1.22288 1.03376 0.83325 0.94353 1.21419 1.08852 0.99717 0.92181 1.21733 1.08792 0.94512 0.98448 1.23887 1.07222 0.96787 0.83829 1.84043 1.70133 1.34876 1.17929 1.20585 1.03858 0.83939 0.90277 1.22678 0.82541 0.96239 1.03172 1.21622 1.01468 0.91269 1.07016 1.21816 0.94314 0.99410 1.07580 1.23860 0.99093 0.81999 1.07577 1.84003 1.34500 1.20055 1.69498 0.92607 0.94548 0.99161 0.93651 0.88521 0.84024 0.83974 0.78691 0.85799 0.93984 0.83294 0.83938 0.78747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.16 13.96 55.43 0.77 -26.39 16 2 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 3 Si 0.87 21.42 27.37 -169.99 -4.65 16.77 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.41 6.69 56.52 0.38 -6.03 16 7 C -0.51 -14.26 8.93 -34.44 -0.31 -14.57 16 8 H 0.08 2.51 7.96 -52.49 -0.42 2.09 16 9 C 0.16 3.88 3.62 -4.97 -0.02 3.86 16 10 N -0.52 -10.73 4.36 -238.97 -1.04 -11.78 16 11 C 0.13 2.27 5.38 -4.98 -0.03 2.24 16 12 C 0.02 0.32 6.23 -35.63 -0.22 0.10 16 13 C -0.20 -3.45 10.81 -39.70 -0.43 -3.88 16 14 C -0.22 -3.29 10.91 -39.71 -0.43 -3.72 16 15 C -0.05 -0.76 12.09 29.41 0.36 -0.41 16 16 O -0.17 -3.30 9.99 5.70 0.06 -3.24 16 17 C 0.14 2.60 5.34 -4.98 -0.03 2.57 16 18 C 0.00 0.06 5.93 -35.63 -0.21 -0.15 16 19 C -0.19 -3.14 10.81 -39.70 -0.43 -3.57 16 20 C -0.21 -2.86 10.91 -39.70 -0.43 -3.29 16 21 C -0.06 -0.72 12.09 29.42 0.36 -0.37 16 22 O -0.18 -2.82 9.62 5.71 0.05 -2.76 16 23 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 24 H 0.04 0.93 6.22 -51.93 -0.32 0.60 16 25 H -0.01 -0.22 7.20 -51.93 -0.37 -0.59 16 26 H 0.05 0.79 8.00 -51.93 -0.42 0.37 16 27 H 0.10 1.60 6.07 -51.93 -0.32 1.28 16 28 H 0.14 2.23 8.06 -52.49 -0.42 1.81 16 29 H 0.14 1.75 8.06 -52.48 -0.42 1.32 16 30 H 0.20 2.19 8.06 -52.48 -0.42 1.76 16 31 H 0.12 2.47 7.19 -51.93 -0.37 2.09 16 32 H 0.04 0.72 8.12 -51.93 -0.42 0.30 16 33 H 0.15 2.42 8.06 -52.48 -0.42 2.00 16 34 H 0.14 1.56 8.06 -52.49 -0.42 1.13 16 35 H 0.20 1.61 8.06 -52.48 -0.42 1.19 16 LS Contribution 302.13 15.07 4.55 4.55 Total: -1.00 -31.87 302.13 -6.52 -38.38 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -4.34 Total: 3.69 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: -1.92 Total: -19.22 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: -0.27 Total: -38.17 kcal Atomic # 8 Polarization: -6.11 SS G_CDS: 0.11 Total: -6.00 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.65 Total: 16.77 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.87 -6.52 -38.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053137900.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.555 kcal (2) G-P(sol) polarization free energy of solvation -31.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds