Wall clock time and date at job start Sun Mar 29 2020 23:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99573 * 2 1 4 4 H 1.48503 * 109.46925 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47173 * 299.99997 * 3 2 1 6 6 H 1.48505 * 109.47229 * 60.00330 * 3 2 1 7 7 C 1.37875 * 120.00370 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99801 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00059 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47027 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47114 * 179.97438 * 10 9 7 12 12 S 1.65604 * 120.00194 * 164.99778 * 11 10 9 13 13 O 1.42096 * 104.27690 * 308.93174 * 12 11 10 14 14 O 1.42100 * 104.27553 * 181.07383 * 12 11 10 15 15 C 1.81399 * 104.44751 * 65.00192 * 12 11 10 16 16 C 1.52997 * 109.47065 * 59.99978 * 15 12 11 17 17 C 1.52999 * 109.47317 * 179.97438 * 16 15 12 18 18 C 1.53005 * 109.47159 * 300.00546 * 17 16 15 19 19 C 1.52997 * 109.47452 * 59.99536 * 18 17 16 20 20 C 1.53000 * 109.46958 * 179.97438 * 15 12 11 21 21 H 0.97001 * 120.00336 * 359.97438 * 1 2 3 22 22 H 1.08995 * 109.46970 * 60.00045 * 9 7 2 23 23 H 1.09003 * 109.46929 * 299.99996 * 9 7 2 24 24 H 1.09004 * 109.47477 * 60.00310 * 10 9 7 25 25 H 1.09003 * 109.47181 * 299.99741 * 10 9 7 26 26 H 0.97004 * 119.99828 * 344.99872 * 11 10 9 27 27 H 1.09002 * 109.47098 * 299.99989 * 15 12 11 28 28 H 1.08996 * 109.47853 * 300.00017 * 16 15 12 29 29 H 1.09002 * 109.47153 * 60.00046 * 16 15 12 30 30 H 1.09000 * 109.47486 * 180.02562 * 17 16 15 31 31 H 1.09002 * 109.46716 * 60.00091 * 17 16 15 32 32 H 1.09002 * 109.46935 * 299.99411 * 18 17 16 33 33 H 1.09001 * 109.46812 * 179.97438 * 18 17 16 34 34 H 1.08993 * 109.47194 * 179.97438 * 19 18 17 35 35 H 1.09002 * 109.46695 * 59.99734 * 19 18 17 36 36 H 1.08992 * 109.47399 * 300.00030 * 20 15 12 37 37 H 1.09004 * 109.46724 * 60.00516 * 20 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0017 10 6 2.2455 -3.6620 -0.0015 11 7 1.5131 -4.9307 -0.0020 12 16 2.2991 -6.3404 -0.3731 13 8 2.9623 -6.0598 -1.5980 14 8 1.2875 -7.3355 -0.2989 15 6 3.5020 -6.5543 0.9677 16 6 2.7643 -6.6466 2.3048 17 6 3.7788 -6.8277 3.4357 18 6 4.5772 -8.1123 3.2038 19 6 5.3149 -8.0200 1.8666 20 6 4.3003 -7.8389 0.7364 21 1 -0.4851 0.8400 0.0004 22 1 0.6249 -2.5563 -0.8919 23 1 0.6242 -2.5575 0.8880 24 1 2.8715 -3.6046 0.8891 25 1 2.8729 -3.6038 -0.8910 26 1 0.5678 -4.9451 0.2151 27 1 4.1815 -5.7022 0.9856 28 1 2.1953 -5.7318 2.4699 29 1 2.0849 -7.4988 2.2869 30 1 3.2533 -6.8940 4.3883 31 1 4.4586 -5.9758 3.4538 32 1 3.8974 -8.9642 3.1857 33 1 5.3002 -8.2410 4.0092 34 1 5.8839 -8.9348 1.7017 35 1 5.9946 -7.1680 1.8848 36 1 3.6206 -8.6908 0.7187 37 1 4.8259 -7.7735 -0.2163 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054138355.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:45:16 Heat of formation + Delta-G solvation = -110.585560 kcal Electronic energy + Delta-G solvation = -18279.101991 eV Core-core repulsion = 15374.981348 eV Total energy + Delta-G solvation = -2904.120643 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.52643 -36.85725 -35.71634 -35.38101 -32.76085 -31.24536 -31.00052 -29.10617 -24.49601 -23.26532 -22.89936 -21.16880 -20.15522 -18.96739 -17.38166 -16.72459 -16.29389 -15.63464 -15.28787 -14.57916 -14.47906 -14.40306 -13.93112 -13.91496 -13.39488 -12.83524 -12.55016 -12.44452 -11.89436 -11.83441 -11.80445 -11.71435 -11.39914 -11.35573 -11.27438 -11.11721 -10.73941 -10.61043 -10.51302 -10.43343 -9.97051 -9.58526 -9.26533 -8.84823 -8.42143 -6.09204 -4.12734 0.50620 3.05369 3.27185 3.35171 3.38815 3.95445 4.17025 4.33135 4.40035 4.62668 4.64389 4.92477 5.02606 5.07252 5.23177 5.27707 5.28291 5.32519 5.55935 5.69773 5.75297 5.77345 5.87964 5.90095 5.96519 5.98882 6.15901 6.19487 6.47023 6.72531 7.44770 7.55482 7.65150 7.89645 8.27130 8.93464 9.52088 11.02240 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.026067 B = 0.004994 C = 0.004593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.912386 B = 5605.478062 C = 6094.396485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.524 4.524 8 H 0.059 0.941 9 C 0.017 3.983 10 C 0.117 3.883 11 N -1.113 6.113 12 S 2.609 3.391 13 O -0.961 6.961 14 O -0.969 6.969 15 C -0.590 4.590 16 C -0.103 4.103 17 C -0.112 4.112 18 C -0.122 4.122 19 C -0.110 4.110 20 C -0.107 4.107 21 H 0.262 0.738 22 H 0.026 0.974 23 H 0.024 0.976 24 H 0.051 0.949 25 H 0.067 0.933 26 H 0.415 0.585 27 H 0.137 0.863 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.269 -15.260 6.405 18.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.563 4.563 8 H 0.078 0.922 9 C -0.021 4.021 10 C -0.008 4.008 11 N -0.874 5.874 12 S 2.702 3.298 13 O -0.951 6.951 14 O -0.959 6.959 15 C -0.699 4.699 16 C -0.141 4.141 17 C -0.151 4.151 18 C -0.160 4.160 19 C -0.149 4.149 20 C -0.146 4.146 21 H 0.071 0.929 22 H 0.044 0.956 23 H 0.042 0.958 24 H 0.069 0.931 25 H 0.085 0.915 26 H 0.250 0.750 27 H 0.155 0.845 28 H 0.101 0.899 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 8.153 -15.674 5.581 18.528 hybrid contribution 0.346 1.313 0.670 1.514 sum 8.499 -14.361 6.251 17.820 Atomic orbital electron populations 1.69967 1.06099 1.26760 1.50286 1.25002 0.94867 0.99382 0.95031 0.86485 0.80077 0.83494 0.77631 1.19645 1.20919 1.20989 1.21128 0.93194 0.90543 1.51435 0.92249 1.19279 0.94066 0.90565 0.98215 1.21636 0.96141 0.82943 1.00067 1.55509 1.21465 1.22130 1.88259 1.05006 0.75449 0.73316 0.76065 1.93582 1.77460 1.84008 1.40005 1.93548 1.55483 1.59278 1.87621 1.30496 1.16061 1.07045 1.16320 1.21310 0.97676 1.03742 0.91390 1.21459 0.97788 0.98134 0.97690 1.21575 0.99169 0.98178 0.97060 1.21431 0.97253 1.02078 0.94107 1.21336 0.98473 0.94480 1.00312 0.92876 0.95592 0.95790 0.93117 0.91463 0.75020 0.84491 0.89887 0.90335 0.91430 0.91513 0.91801 0.91860 0.91495 0.91479 0.90530 0.90482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.03 13.29 55.43 0.74 -25.30 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.52 -14.17 9.11 -34.44 -0.31 -14.49 16 8 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 9 C 0.02 0.43 5.11 -27.88 -0.14 0.28 16 10 C 0.12 2.26 6.07 -4.04 -0.02 2.23 16 11 N -1.11 -18.40 5.57 -10.61 -0.06 -18.46 16 12 S 2.61 40.03 4.90 -107.50 -0.53 39.50 16 13 O -0.96 -18.10 17.50 -57.54 -1.01 -19.10 16 14 O -0.97 -16.67 17.96 -57.54 -1.03 -17.71 16 15 C -0.59 -6.83 2.75 -26.73 -0.07 -6.91 16 16 C -0.10 -1.10 5.07 -26.73 -0.14 -1.24 16 17 C -0.11 -1.03 5.92 -26.73 -0.16 -1.19 16 18 C -0.12 -1.01 5.92 -26.73 -0.16 -1.17 16 19 C -0.11 -0.94 5.92 -26.76 -0.16 -1.10 16 20 C -0.11 -1.09 5.21 -26.75 -0.14 -1.23 16 21 H 0.26 7.19 8.31 -40.82 -0.34 6.86 16 22 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.07 1.34 7.70 -51.93 -0.40 0.94 16 26 H 0.42 6.52 8.62 -34.47 -0.30 6.22 16 27 H 0.14 1.47 8.14 -51.92 -0.42 1.05 16 28 H 0.08 0.90 7.91 -51.93 -0.41 0.49 16 29 H 0.08 0.82 8.11 -51.93 -0.42 0.40 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 312.71 15.07 4.71 4.71 Total: -1.00 -32.83 312.71 -9.74 -42.58 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -6.14 Total: 1.02 kcal Atomic # 6 Polarization: -21.86 SS G_CDS: -1.40 Total: -23.26 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: 0.68 Total: -43.76 kcal Atomic # 8 Polarization: -34.77 SS G_CDS: -2.04 Total: -36.81 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 40.03 SS G_CDS: -0.53 Total: 39.50 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.83 -9.74 -42.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054138355.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.010 kcal (2) G-P(sol) polarization free energy of solvation -32.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds