Wall clock time and date at job start Mon Mar 30 2020 00:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35692 * 117.00299 * 2 1 4 4 C 1.38597 * 120.16055 * 0.02562 * 3 2 1 5 5 C 1.38142 * 120.11013 * 179.97438 * 4 3 2 6 6 C 1.38573 * 120.44461 * 0.02562 * 5 4 3 7 7 C 1.37745 * 120.32091 * 0.02562 * 6 5 4 8 8 C 1.39961 * 119.87833 * 359.97438 * 7 6 5 9 9 C 1.46889 * 120.21521 * 180.02562 * 8 7 6 10 10 C 1.50707 * 119.99733 * 254.99943 * 9 8 7 11 11 C 1.35153 * 120.00339 * 74.99819 * 9 8 7 12 12 C 1.41781 * 120.00251 * 185.69931 * 11 9 8 13 13 O 1.21781 * 120.00079 * 5.68012 * 12 11 9 14 14 N 1.34777 * 120.00069 * 185.68574 * 12 11 9 15 15 C 1.36752 * 120.00188 * 179.97438 * 14 12 11 16 16 H 1.08001 * 120.00099 * 359.97438 * 15 14 12 17 17 C 1.39088 * 120.00086 * 179.97438 * 15 14 12 18 18 N 1.31351 * 119.99943 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 120.00272 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47626 * 89.99549 * 19 17 15 21 21 H 1.48499 * 109.47373 * 209.99962 * 19 17 15 22 22 H 1.48503 * 109.47035 * 329.99749 * 19 17 15 23 23 H 1.08998 * 109.46869 * 59.99383 * 1 2 3 24 24 H 1.08997 * 109.47386 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47031 * 299.99892 * 1 2 3 26 26 H 1.07997 * 119.93946 * 0.25101 * 4 3 2 27 27 H 1.07997 * 119.77387 * 179.97438 * 5 4 3 28 28 H 1.08001 * 119.84129 * 179.97438 * 6 5 4 29 29 H 1.08001 * 120.06014 * 180.02562 * 7 6 5 30 30 H 1.08999 * 109.46985 * 354.80339 * 10 9 8 31 31 H 1.09001 * 109.47268 * 114.80893 * 10 9 8 32 32 H 1.09003 * 109.46906 * 234.80408 * 10 9 8 33 33 H 1.08008 * 119.99835 * 5.69906 * 11 9 8 34 34 H 0.97001 * 120.00570 * 359.97438 * 14 12 11 35 35 H 0.97004 * 119.99507 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2090 0.0000 4 6 1.2936 2.3735 0.0005 5 6 1.9219 3.6038 0.0011 6 6 3.3052 3.6858 0.0005 7 6 4.0697 2.5399 -0.0011 8 6 3.4472 1.2864 -0.0016 9 6 4.2553 0.0597 -0.0027 10 6 4.3871 -0.7545 -1.2640 11 6 4.8805 -0.3387 1.1273 12 6 5.7566 -1.4531 1.0975 13 8 6.0266 -1.9872 0.0369 14 7 6.2905 -1.9213 2.2430 15 6 7.1351 -2.9965 2.2144 16 1 7.3740 -3.4707 1.2740 17 6 7.6865 -3.4793 3.3965 18 7 8.4973 -4.5123 3.3691 19 14 7.2729 -2.6597 5.0233 20 1 6.0715 -3.3048 5.6114 21 1 8.4191 -2.8045 5.9562 22 1 6.9991 -1.2180 4.7957 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.2150 2.3189 0.0051 27 1 1.3310 4.5077 0.0011 28 1 3.7863 4.6527 0.0005 29 1 5.1475 2.6087 -0.0010 30 1 3.7455 -0.3326 -2.0376 31 1 5.4234 -0.7363 -1.6016 32 1 4.0879 -1.7836 -1.0651 33 1 4.7128 0.1918 2.0530 34 1 6.0758 -1.4957 3.0878 35 1 8.8815 -4.8493 4.1936 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066645103.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:30 Heat of formation + Delta-G solvation = -25.855233 kcal Electronic energy + Delta-G solvation = -18835.315712 eV Core-core repulsion = 15799.425301 eV Total energy + Delta-G solvation = -3035.890411 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.22819 -38.61702 -37.40746 -34.81932 -33.56780 -31.69089 -30.35418 -29.84745 -27.57856 -27.34921 -24.70983 -23.15379 -22.05327 -20.27519 -19.03176 -18.15414 -17.33901 -16.20964 -16.08074 -15.78887 -15.35766 -14.79149 -14.52413 -13.96569 -13.75309 -13.48712 -13.41148 -12.89318 -12.60483 -12.40138 -12.12588 -11.94550 -11.85185 -11.52590 -11.22431 -11.18891 -11.07910 -10.84419 -10.56861 -9.97551 -9.54855 -8.98026 -8.55072 -8.23677 -8.15462 -8.07011 -6.34381 -3.76249 1.15958 1.37818 1.95968 3.06729 3.09947 3.16004 3.21735 3.67133 4.10027 4.35128 4.61516 4.74535 4.89990 4.97758 5.00951 5.10568 5.30635 5.33733 5.35275 5.37265 5.52830 5.62920 5.86324 6.14002 6.19225 6.22335 6.29710 6.43332 6.53795 6.69795 6.70979 7.00069 7.11064 7.37243 7.60610 8.20021 8.63090 8.97497 9.45152 9.93446 10.78254 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.025825 B = 0.004681 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.973204 B = 5979.974340 C = 6089.122800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.304 6.304 3 C 0.138 3.862 4 C -0.212 4.212 5 C -0.085 4.085 6 C -0.158 4.158 7 C -0.067 4.067 8 C -0.075 4.075 9 C -0.023 4.023 10 C -0.088 4.088 11 C -0.184 4.184 12 C 0.472 3.528 13 O -0.582 6.582 14 N -0.579 5.579 15 C -0.296 4.296 16 H 0.122 0.878 17 C 0.040 3.960 18 N -0.874 5.874 19 Si 0.879 3.121 20 H -0.270 1.270 21 H -0.276 1.276 22 H -0.268 1.268 23 H 0.053 0.947 24 H 0.100 0.900 25 H 0.053 0.947 26 H 0.127 0.873 27 H 0.122 0.878 28 H 0.124 0.876 29 H 0.132 0.868 30 H 0.036 0.964 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.108 0.892 34 H 0.371 0.629 35 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.599 15.696 -3.698 22.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.216 6.216 3 C 0.092 3.908 4 C -0.230 4.230 5 C -0.103 4.103 6 C -0.176 4.176 7 C -0.085 4.085 8 C -0.076 4.076 9 C -0.027 4.027 10 C -0.144 4.144 11 C -0.205 4.205 12 C 0.264 3.736 13 O -0.469 6.469 14 N -0.216 5.216 15 C -0.425 4.425 16 H 0.139 0.861 17 C -0.164 4.164 18 N -0.514 5.514 19 Si 0.706 3.294 20 H -0.195 1.195 21 H -0.201 1.201 22 H -0.193 1.193 23 H 0.072 0.928 24 H 0.118 0.882 25 H 0.072 0.928 26 H 0.145 0.855 27 H 0.140 0.860 28 H 0.142 0.858 29 H 0.150 0.850 30 H 0.055 0.945 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.126 0.874 34 H 0.204 0.796 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -15.175 14.948 -4.252 21.721 hybrid contribution -0.532 0.749 1.611 1.855 sum -15.707 15.697 -2.640 22.362 Atomic orbital electron populations 1.23069 0.78713 1.04054 1.01006 1.86151 1.20926 1.26493 1.88042 1.19207 0.91391 0.84367 0.95790 1.21138 0.99830 0.92291 1.09771 1.20953 0.94680 0.96747 0.97959 1.20955 0.93764 0.98332 1.04571 1.21229 1.00181 0.90302 0.96812 1.18399 0.89563 0.93940 1.05701 1.20608 0.93591 0.92309 0.96169 1.20751 1.02198 0.98916 0.92580 1.21884 1.00791 1.00140 0.97711 1.16539 0.85716 0.86744 0.84589 1.90673 1.65151 1.61868 1.29170 1.42250 1.42617 1.29392 1.07319 1.19512 1.20353 1.05195 0.97452 0.86051 1.25111 0.96632 0.96466 0.98182 1.69603 1.29883 1.23290 1.28589 0.86658 0.79152 0.79716 0.83923 1.19501 1.20072 1.19318 0.92804 0.88158 0.92799 0.85548 0.86042 0.85828 0.84965 0.94537 0.89764 0.90419 0.87360 0.79623 0.91492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.30 -4.28 9.95 -18.78 -0.19 -4.47 16 3 C 0.14 1.93 6.71 -38.63 -0.26 1.67 16 4 C -0.21 -2.34 9.03 -39.48 -0.36 -2.70 16 5 C -0.09 -0.86 10.03 -39.49 -0.40 -1.25 16 6 C -0.16 -1.69 10.02 -39.64 -0.40 -2.09 16 7 C -0.07 -0.87 9.79 -39.12 -0.38 -1.25 16 8 C -0.08 -1.14 5.21 -104.93 -0.55 -1.69 16 9 C -0.02 -0.42 5.00 -102.22 -0.51 -0.93 16 10 C -0.09 -1.64 8.32 36.01 0.30 -1.34 16 11 C -0.18 -3.64 9.48 -39.33 -0.37 -4.01 16 12 C 0.47 11.52 7.46 -14.91 -0.11 11.41 16 13 O -0.58 -15.90 12.65 5.12 0.06 -15.84 16 14 N -0.58 -14.57 5.07 -13.56 -0.07 -14.64 16 15 C -0.30 -8.55 10.16 -15.04 -0.15 -8.70 16 16 H 0.12 3.96 7.38 -52.49 -0.39 3.58 16 17 C 0.04 1.11 5.50 -17.44 -0.10 1.01 16 18 N -0.87 -25.65 13.95 55.50 0.77 -24.87 16 19 Si 0.88 19.79 27.74 -169.99 -4.71 15.07 16 20 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 21 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 22 H -0.27 -5.58 6.52 56.52 0.37 -5.21 16 23 H 0.05 0.40 7.67 -51.93 -0.40 0.00 16 24 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.05 0.41 7.66 -51.93 -0.40 0.02 16 26 H 0.13 1.08 6.30 -52.49 -0.33 0.75 16 27 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 28 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 29 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 30 H 0.04 0.58 7.99 -51.93 -0.41 0.17 16 31 H 0.08 1.68 7.08 -51.93 -0.37 1.31 16 32 H 0.08 1.59 7.41 -51.93 -0.38 1.21 16 33 H 0.11 1.88 8.06 -52.48 -0.42 1.46 16 34 H 0.37 8.31 5.72 -40.82 -0.23 8.08 16 35 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 302.51 15.07 4.56 4.56 Total: -1.00 -33.07 302.51 -6.06 -39.13 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -4.20 Total: 9.70 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: -2.29 Total: -8.65 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: 0.71 Total: -39.51 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.12 Total: -20.30 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -4.71 Total: 15.07 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -33.07 -6.06 -39.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066645103.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.275 kcal (2) G-P(sol) polarization free energy of solvation -33.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds