Wall clock time and date at job start Sun Mar 29 2020 23:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86795 * 120.00260 * 2 1 4 4 H 1.48498 * 109.47181 * 269.99705 * 3 2 1 5 5 H 1.48498 * 109.47260 * 30.00086 * 3 2 1 6 6 H 1.48502 * 109.47130 * 149.99905 * 3 2 1 7 7 C 1.38659 * 119.99705 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99848 * 0.02562 * 7 2 1 9 9 O 1.34828 * 120.00122 * 180.02562 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94542 * 9 7 2 11 11 C 1.38880 * 120.06526 * 185.25998 * 10 9 7 12 12 C 1.38105 * 119.92781 * 179.76650 * 11 10 9 13 13 C 1.38304 * 120.06646 * 0.48744 * 12 11 10 14 14 C 1.50707 * 119.92974 * 179.74714 * 13 12 11 15 15 N 1.46507 * 109.46761 * 270.02289 * 14 13 12 16 16 C 1.34776 * 119.99610 * 180.02562 * 15 14 13 17 17 O 1.21282 * 120.00030 * 359.97438 * 16 15 14 18 18 C 1.50705 * 119.99799 * 179.97438 * 16 15 14 19 19 C 1.52997 * 117.49862 * 248.74911 * 18 16 15 20 20 C 1.52999 * 117.49594 * 180.08562 * 18 16 15 21 21 C 1.38302 * 120.13995 * 359.76849 * 13 12 11 22 22 C 1.38101 * 120.06877 * 359.97438 * 21 13 12 23 23 H 0.96997 * 119.99350 * 359.97438 * 1 2 3 24 24 H 1.07996 * 120.04097 * 0.02562 * 11 10 9 25 25 H 1.07996 * 119.96589 * 180.23432 * 12 11 10 26 26 H 1.09002 * 109.47040 * 30.01809 * 14 13 12 27 27 H 1.08995 * 109.46954 * 150.02268 * 14 13 12 28 28 H 0.96995 * 120.00045 * 359.97438 * 15 14 13 29 29 H 1.09001 * 115.54682 * 34.41268 * 18 16 15 30 30 H 1.09003 * 117.50250 * 359.97438 * 19 18 16 31 31 H 1.08998 * 117.50050 * 145.02276 * 19 18 16 32 32 H 1.09005 * 117.49501 * 214.97701 * 20 18 16 33 33 H 1.08999 * 117.50071 * 359.97438 * 20 18 16 34 34 H 1.07999 * 119.96521 * 179.97438 * 21 13 12 35 35 H 1.07997 * 120.03156 * 179.97438 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 2.4972 2.0463 -1.4000 5 1 1.4472 2.6526 0.7000 6 1 3.5472 1.4400 0.7001 7 6 2.0088 -1.2009 0.0005 8 1 1.4687 -2.1362 0.0005 9 8 3.3571 -1.2010 0.0011 10 6 3.9733 -2.4058 0.1081 11 6 5.3555 -2.4724 0.2252 12 6 5.9791 -3.6994 0.3388 13 6 5.2293 -4.8615 0.3260 14 6 5.9134 -6.1991 0.4444 15 7 6.2539 -6.6935 -0.8921 16 6 6.8762 -7.8806 -1.0330 17 8 7.1546 -8.5395 -0.0536 18 6 7.2260 -8.3894 -2.4078 19 6 6.4643 -9.6120 -2.9236 20 6 7.9298 -9.7447 -2.5015 21 6 3.8530 -4.7987 0.2042 22 6 3.2232 -3.5745 0.0955 23 1 -0.4849 0.8401 0.0004 24 1 5.9419 -1.5655 0.2316 25 1 7.0536 -3.7518 0.4337 26 1 6.8234 -6.0908 1.0345 27 1 5.2448 -6.9070 0.9342 28 1 6.0309 -6.1667 -1.6754 29 1 7.5043 -7.6263 -3.1347 30 1 5.7104 -10.0486 -2.2684 31 1 6.2420 -9.6535 -3.9898 32 1 8.6709 -9.8734 -3.2904 33 1 8.1402 -10.2681 -1.5689 34 1 3.2703 -5.7079 0.1941 35 1 2.1485 -3.5262 0.0001 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067930211.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:34:18 Heat of formation + Delta-G solvation = -18.362082 kcal Electronic energy + Delta-G solvation = -18176.167575 eV Core-core repulsion = 15140.602091 eV Total energy + Delta-G solvation = -3035.565484 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.01255 -39.25912 -37.21099 -36.22363 -34.44591 -32.49324 -30.44351 -30.19235 -26.52112 -25.07600 -23.38494 -22.65435 -22.20154 -20.63841 -20.08971 -18.01917 -17.68717 -17.31093 -16.07143 -15.51402 -15.11325 -14.72230 -14.58091 -14.12798 -14.00528 -13.88879 -13.45919 -12.89894 -12.73736 -12.66881 -12.28624 -12.04059 -11.80095 -11.52191 -11.01497 -10.88452 -10.84957 -10.78393 -10.70753 -10.23485 -9.91776 -9.50317 -9.02384 -8.96788 -8.40249 -7.50100 -6.51547 -4.18650 1.92922 2.00434 2.44729 3.15367 3.19142 3.27290 3.33532 3.67158 4.15272 4.36149 4.53385 4.64893 4.66512 4.71980 4.95156 5.01107 5.14143 5.32579 5.34739 5.51547 5.54083 5.70186 5.70587 5.85689 5.88354 6.01060 6.22475 6.42379 6.47166 6.65646 6.87887 7.10284 7.16631 7.47547 7.55575 7.68961 7.92584 8.22018 8.82937 9.43426 10.55640 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.043664 B = 0.003382 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.105435 B = 8278.256887 C = 8442.377848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.259 1.259 7 C -0.392 4.392 8 H 0.108 0.892 9 O -0.213 6.213 10 C 0.167 3.833 11 C -0.195 4.195 12 C -0.056 4.056 13 C -0.206 4.206 14 C 0.177 3.823 15 N -0.718 5.718 16 C 0.538 3.462 17 O -0.549 6.549 18 C -0.195 4.195 19 C -0.153 4.153 20 C -0.150 4.150 21 C -0.052 4.052 22 C -0.224 4.224 23 H 0.281 0.719 24 H 0.119 0.881 25 H 0.114 0.886 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.403 0.597 29 H 0.123 0.877 30 H 0.099 0.901 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.107 0.893 34 H 0.111 0.889 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.949 -12.402 -5.065 17.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.467 4.467 8 H 0.125 0.875 9 O -0.117 6.117 10 C 0.114 3.886 11 C -0.214 4.214 12 C -0.075 4.075 13 C -0.208 4.208 14 C 0.055 3.945 15 N -0.368 5.368 16 C 0.324 3.676 17 O -0.427 6.427 18 C -0.216 4.216 19 C -0.191 4.191 20 C -0.187 4.187 21 C -0.071 4.071 22 C -0.243 4.243 23 H 0.091 0.909 24 H 0.137 0.863 25 H 0.132 0.868 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.237 0.763 29 H 0.141 0.859 30 H 0.117 0.883 31 H 0.122 0.878 32 H 0.120 0.880 33 H 0.125 0.875 34 H 0.129 0.871 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 12.000 -12.475 -4.351 17.849 hybrid contribution -0.101 1.108 -0.425 1.191 sum 11.899 -11.368 -4.776 17.135 Atomic orbital electron populations 1.69643 1.05618 1.28696 1.47290 1.24493 0.95047 0.98943 0.95452 0.86166 0.80343 0.81299 0.79035 1.19795 1.20697 1.18291 1.20793 0.76761 0.96735 1.52445 0.87495 1.83572 1.22769 1.25833 1.79507 1.19181 0.91733 0.85508 0.92214 1.20212 0.91962 0.97912 1.11330 1.20540 0.98420 0.91230 0.97332 1.19281 0.93779 0.93439 1.14280 1.20007 0.98873 0.92336 0.83300 1.46250 1.59696 1.20693 1.10188 1.19686 0.77179 0.80976 0.89732 1.90680 1.54294 1.57383 1.40383 1.22229 1.08838 0.93629 0.96875 1.22942 0.95722 0.98550 1.01881 1.22949 0.95130 0.96770 1.03856 1.20703 0.93356 0.96865 0.96175 1.21282 1.01263 0.91753 1.10016 0.90885 0.86341 0.86762 0.91440 0.91465 0.76252 0.85888 0.88259 0.87813 0.88046 0.87468 0.87099 0.84768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.66 13.96 55.48 0.77 -23.89 16 2 C 0.06 1.76 5.49 -17.51 -0.10 1.67 16 3 Si 0.91 21.03 28.62 -169.99 -4.86 16.17 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.26 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.39 -10.68 9.95 30.89 0.31 -10.38 16 8 H 0.11 2.97 5.44 -52.48 -0.29 2.69 16 9 O -0.21 -5.39 8.59 0.05 0.00 -5.39 16 10 C 0.17 3.65 6.65 -39.11 -0.26 3.39 16 11 C -0.19 -3.61 9.99 -39.39 -0.39 -4.01 16 12 C -0.06 -0.89 9.69 -39.61 -0.38 -1.27 16 13 C -0.21 -3.16 5.25 -104.57 -0.55 -3.71 16 14 C 0.18 2.40 5.80 -5.19 -0.03 2.37 16 15 N -0.72 -8.68 5.55 -61.46 -0.34 -9.02 16 16 C 0.54 6.92 7.61 -10.98 -0.08 6.84 16 17 O -0.55 -9.05 16.26 5.56 0.09 -8.96 16 18 C -0.19 -1.83 6.19 -91.77 -0.57 -2.39 16 19 C -0.15 -1.24 10.24 -26.69 -0.27 -1.52 16 20 C -0.15 -1.27 10.05 -26.69 -0.27 -1.54 16 21 C -0.05 -0.88 9.69 -39.61 -0.38 -1.26 16 22 C -0.22 -4.55 9.17 -39.40 -0.36 -4.91 16 23 H 0.28 7.30 8.31 -40.82 -0.34 6.96 16 24 H 0.12 2.05 8.06 -52.49 -0.42 1.63 16 25 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 26 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 27 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 28 H 0.40 4.25 8.46 -40.82 -0.35 3.91 16 29 H 0.12 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.11 1.07 7.67 -51.93 -0.40 0.68 16 34 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 35 H 0.13 2.89 5.64 -52.49 -0.30 2.59 16 LS Contribution 308.48 15.07 4.65 4.65 Total: -1.00 -30.06 308.48 -7.29 -37.35 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -4.26 Total: 5.82 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: -3.34 Total: -16.72 kcal Atomic # 7 Polarization: -33.35 SS G_CDS: 0.43 Total: -32.91 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: 0.09 Total: -14.35 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.86 Total: 16.17 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.06 -7.29 -37.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067930211.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.988 kcal (2) G-P(sol) polarization free energy of solvation -30.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds