Wall clock time and date at job start Mon Mar 30 2020 00:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47459 * 2 1 4 4 H 1.09004 * 109.47080 * 55.04565 * 3 2 1 5 5 C 1.50694 * 109.47327 * 175.04791 * 3 2 1 6 6 H 1.08001 * 120.00080 * 120.00526 * 5 3 2 7 7 C 1.37875 * 120.00344 * 300.00002 * 5 3 2 8 8 N 1.31517 * 120.00625 * 180.02562 * 7 5 3 9 9 Si 1.86808 * 119.99847 * 359.97438 * 7 5 3 10 10 H 1.48499 * 109.47060 * 89.99726 * 9 7 5 11 11 H 1.48500 * 109.47225 * 210.00007 * 9 7 5 12 12 H 1.48505 * 109.47030 * 330.00258 * 9 7 5 13 13 N 1.46901 * 109.47159 * 295.05008 * 3 2 1 14 14 C 1.46896 * 111.00100 * 155.30921 * 13 3 2 15 15 H 1.09005 * 109.38523 * 33.39225 * 14 13 3 16 16 C 1.52588 * 109.38850 * 273.70409 * 14 13 3 17 17 C 1.52589 * 110.64602 * 169.85773 * 16 14 13 18 18 C 1.53033 * 109.98433 * 69.98436 * 17 16 14 19 19 S 1.81668 * 109.00130 * 296.35353 * 18 17 16 20 20 O 1.42101 * 108.66395 * 299.97206 * 19 18 17 21 21 O 1.42105 * 108.66259 * 168.63066 * 19 18 17 22 22 C 1.53042 * 109.38194 * 153.17961 * 14 13 3 23 23 H 1.09001 * 109.47043 * 295.84403 * 1 2 3 24 24 H 1.09002 * 109.47056 * 55.84270 * 1 2 3 25 25 H 1.09001 * 109.47176 * 175.84894 * 1 2 3 26 26 H 1.09000 * 109.47356 * 239.99725 * 2 1 3 27 27 H 1.09000 * 109.47322 * 120.00145 * 2 1 3 28 28 H 0.96995 * 120.00270 * 180.02562 * 8 7 5 29 29 H 1.00895 * 110.99974 * 279.26879 * 13 3 2 30 30 H 1.08995 * 109.24241 * 290.15602 * 16 14 13 31 31 H 1.08996 * 109.24274 * 49.55673 * 16 14 13 32 32 H 1.08999 * 109.37987 * 309.82965 * 17 16 14 33 33 H 1.08994 * 109.29980 * 190.09533 * 17 16 14 34 34 H 1.09003 * 109.54808 * 176.50198 * 18 17 16 35 35 H 1.09001 * 109.63075 * 56.25835 * 18 17 16 36 36 H 1.08996 * 109.54875 * 303.65620 * 22 14 13 37 37 H 1.08995 * 109.54808 * 63.86041 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6060 1.9813 0.8423 5 6 3.5420 1.4442 0.1226 6 1 4.1467 1.8890 -0.6538 7 6 4.1443 0.8780 1.2261 8 7 5.4550 0.8799 1.3334 9 14 3.0983 0.1093 2.5696 10 1 2.8761 -1.3267 2.2632 11 1 3.7972 0.2348 3.8738 12 1 1.7901 0.8086 2.6396 13 7 1.6504 2.0996 -1.2547 14 6 1.5789 3.5570 -1.0855 15 1 2.3341 3.8753 -0.3668 16 6 0.1959 3.9396 -0.5667 17 6 0.1664 5.4054 -0.1438 18 6 0.2580 6.3073 -1.3768 19 16 1.8608 6.0383 -2.1886 20 8 2.8957 6.3611 -1.2700 21 8 1.8371 6.6689 -3.4618 22 6 1.8395 4.2379 -2.4312 23 1 -0.3633 0.4480 0.9249 24 1 -0.3633 0.5770 -0.8504 25 1 -0.3633 -1.0250 -0.0744 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 5.8787 0.4812 2.1096 29 1 2.2806 1.8529 -2.0030 30 1 -0.5404 3.7779 -1.3538 31 1 -0.0520 3.3134 0.2904 32 1 1.0095 5.6085 0.5164 33 1 -0.7646 5.6091 0.3851 34 1 0.1739 7.3506 -1.0725 35 1 -0.5473 6.0633 -2.0696 36 1 2.8021 3.9116 -2.8247 37 1 1.0492 3.9724 -3.1333 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069137748.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:08 Heat of formation + Delta-G solvation = -77.212993 kcal Electronic energy + Delta-G solvation = -18895.556662 eV Core-core repulsion = 15992.883163 eV Total energy + Delta-G solvation = -2902.673499 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.12361 -36.83915 -35.92037 -35.32191 -32.67547 -31.90949 -29.35471 -27.57234 -26.51299 -22.96765 -22.41294 -20.49595 -19.86165 -18.67543 -17.10157 -16.66115 -16.27651 -15.59950 -15.17994 -14.88445 -14.64642 -14.10543 -13.64783 -13.47236 -12.97820 -12.87051 -12.61815 -12.06609 -11.95751 -11.91092 -11.79351 -11.62463 -11.35706 -11.28483 -11.25375 -10.89349 -10.73861 -10.45047 -10.31183 -10.07529 -9.80411 -9.53019 -9.26382 -8.62882 -7.55800 -6.17092 -4.19437 0.10362 2.73259 3.21414 3.31519 3.34106 3.71701 3.98886 4.31811 4.53415 4.59337 4.80727 4.84583 5.00996 5.09026 5.16592 5.43963 5.57000 5.64265 5.73094 5.91461 5.97760 5.98962 6.02166 6.19147 6.30368 6.44351 6.60187 6.65390 6.88009 7.00466 7.17228 7.48113 7.87189 8.23389 8.39054 8.84274 9.45146 10.95699 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.025875 B = 0.006684 C = 0.006068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.876567 B = 4187.899352 C = 4613.094587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.116 4.116 3 C 0.181 3.819 4 H 0.036 0.964 5 C -0.552 4.552 6 H 0.074 0.926 7 C 0.074 3.926 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.298 1.298 12 H -0.264 1.264 13 N -0.669 5.669 14 C 0.102 3.898 15 H 0.076 0.924 16 C -0.129 4.129 17 C -0.111 4.111 18 C -0.602 4.602 19 S 2.414 3.586 20 O -0.933 6.933 21 O -0.953 6.953 22 C -0.600 4.600 23 H 0.038 0.962 24 H 0.064 0.936 25 H 0.033 0.967 26 H 0.058 0.942 27 H 0.046 0.954 28 H 0.265 0.735 29 H 0.340 0.660 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.134 0.866 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.821 6.718 -4.514 15.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.154 4.154 3 C 0.072 3.928 4 H 0.054 0.946 5 C -0.590 4.590 6 H 0.092 0.908 7 C -0.129 4.129 8 N -0.531 5.531 9 Si 0.720 3.280 10 H -0.205 1.205 11 H -0.225 1.225 12 H -0.189 1.189 13 N -0.300 5.300 14 C -0.010 4.010 15 H 0.094 0.906 16 C -0.167 4.167 17 C -0.150 4.150 18 C -0.731 4.731 19 S 2.596 3.404 20 O -0.930 6.930 21 O -0.950 6.950 22 C -0.730 4.730 23 H 0.057 0.943 24 H 0.083 0.917 25 H 0.052 0.948 26 H 0.076 0.924 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.158 0.842 30 H 0.091 0.909 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.147 0.853 35 H 0.149 0.851 36 H 0.153 0.847 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -12.676 7.212 -4.546 15.276 hybrid contribution 0.008 -0.884 0.935 1.287 sum -12.668 6.328 -3.612 14.614 Atomic orbital electron populations 1.21759 0.97574 0.99615 1.01289 1.21817 0.93824 0.99245 1.00559 1.19668 0.94455 0.90713 0.88012 0.94632 1.21719 0.90387 1.39490 1.07438 0.90844 1.25011 0.94771 0.95236 0.97905 1.69911 1.08848 1.44581 1.29764 0.86823 0.80560 0.79819 0.80836 1.20487 1.22522 1.18931 1.60856 1.55950 1.03972 1.09186 1.21089 0.96950 0.91368 0.91566 0.90650 1.21754 0.97612 0.94430 1.02946 1.21304 1.04921 0.93703 0.95050 1.30214 1.23070 1.09074 1.10757 1.08095 0.77951 0.78686 0.75620 1.93617 1.52531 1.82305 1.64514 1.93568 1.87058 1.73622 1.40771 1.30465 1.11582 1.23566 1.07407 0.94297 0.91707 0.94785 0.92357 0.93617 0.92534 0.84221 0.90851 0.89527 0.89652 0.89764 0.85294 0.85139 0.84749 0.84686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.85 37.15 0.37 -2.08 16 2 C -0.12 -2.38 5.11 -26.74 -0.14 -2.52 16 3 C 0.18 3.90 1.33 -68.87 -0.09 3.81 16 4 H 0.04 0.80 6.25 -51.93 -0.32 0.47 16 5 C -0.55 -14.62 8.83 -34.44 -0.30 -14.92 16 6 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 7 C 0.07 2.07 5.45 -17.82 -0.10 1.98 16 8 N -0.89 -26.80 13.96 55.43 0.77 -26.03 16 9 Si 0.89 21.36 24.41 -169.99 -4.15 17.21 16 10 H -0.28 -6.54 6.83 56.52 0.39 -6.15 16 11 H -0.30 -7.24 7.11 56.52 0.40 -6.83 16 12 H -0.26 -6.01 6.53 56.52 0.37 -5.64 16 13 N -0.67 -11.87 5.43 -101.16 -0.55 -12.41 16 14 C 0.10 1.58 2.13 -67.90 -0.14 1.43 16 15 H 0.08 1.39 7.47 -51.93 -0.39 1.01 16 16 C -0.13 -1.61 5.15 -27.15 -0.14 -1.75 16 17 C -0.11 -1.17 5.73 -26.92 -0.15 -1.32 16 18 C -0.60 -5.53 6.35 37.17 0.24 -5.29 16 19 S 2.41 30.68 5.31 -107.50 -0.57 30.11 16 20 O -0.93 -15.96 17.94 -57.81 -1.04 -16.99 16 21 O -0.95 -14.51 18.10 -57.81 -1.05 -15.55 16 22 C -0.60 -7.51 5.63 37.18 0.21 -7.30 16 23 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.06 1.02 7.64 -51.93 -0.40 0.63 16 25 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.05 1.01 3.22 -51.93 -0.17 0.84 16 28 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 29 H 0.34 6.08 7.97 -39.29 -0.31 5.77 16 30 H 0.07 0.77 8.09 -51.93 -0.42 0.35 16 31 H 0.09 1.18 7.41 -51.93 -0.38 0.80 16 32 H 0.08 0.99 8.01 -51.93 -0.42 0.58 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.13 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.13 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.13 1.71 8.05 -51.93 -0.42 1.29 16 37 H 0.13 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 298.57 15.07 4.50 4.50 Total: -1.00 -33.77 298.57 -8.13 -41.90 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -5.79 Total: 5.23 kcal Atomic # 6 Polarization: -27.71 SS G_CDS: -0.26 Total: -27.97 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: 0.22 Total: -38.44 kcal Atomic # 8 Polarization: -30.46 SS G_CDS: -2.08 Total: -32.55 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.15 Total: 17.21 kcal Atomic # 16 Polarization: 30.68 SS G_CDS: -0.57 Total: 30.11 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -33.77 -8.13 -41.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069137748.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.312 kcal (2) G-P(sol) polarization free energy of solvation -33.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds