Wall clock time and date at job start Sun Mar 29 2020 23:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38402 * 119.82806 * 2 1 4 4 C 1.37885 * 120.17407 * 180.28065 * 3 2 1 5 5 C 1.39851 * 119.82281 * 359.43610 * 4 3 2 6 6 C 1.47168 * 120.17582 * 180.29957 * 5 4 3 7 7 O 1.21262 * 119.99476 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00520 * 180.02562 * 6 5 4 9 9 C 1.52998 * 109.47015 * 180.02562 * 8 6 5 10 10 C 1.50698 * 109.47012 * 180.02562 * 9 8 6 11 11 O 1.21292 * 120.00038 * 359.97438 * 10 9 8 12 12 N 1.34783 * 120.00205 * 180.02562 * 10 9 8 13 13 C 1.37093 * 119.99971 * 179.97438 * 12 10 9 14 14 H 1.08010 * 120.00278 * 359.97438 * 13 12 10 15 15 C 1.38954 * 119.99971 * 179.97438 * 13 12 10 16 16 N 1.31404 * 119.99649 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00013 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47177 * 90.00193 * 17 15 13 19 19 H 1.48503 * 109.47094 * 210.00395 * 17 15 13 20 20 H 1.48498 * 109.47270 * 330.00090 * 17 15 13 21 21 C 1.39853 * 119.65985 * 0.28751 * 5 4 3 22 22 C 1.37892 * 119.82327 * 359.97438 * 21 5 4 23 23 H 1.08999 * 109.47370 * 270.27837 * 1 2 3 24 24 H 1.09002 * 109.46875 * 30.28498 * 1 2 3 25 25 H 1.09007 * 109.47167 * 150.27884 * 1 2 3 26 26 H 1.07998 * 119.91183 * 359.97438 * 3 2 1 27 27 H 1.08002 * 120.09199 * 179.72215 * 4 3 2 28 28 H 1.08994 * 109.47311 * 300.00700 * 8 6 5 29 29 H 1.09003 * 109.46942 * 60.00429 * 8 6 5 30 30 H 1.09002 * 109.47272 * 300.00076 * 9 8 6 31 31 H 1.08995 * 109.47284 * 59.99996 * 9 8 6 32 32 H 0.96998 * 119.99678 * 359.97438 * 12 10 9 33 33 H 0.97007 * 119.99687 * 179.97438 * 16 15 13 34 34 H 1.08001 * 120.09350 * 180.02562 * 21 5 4 35 35 H 1.07999 * 119.91308 * 180.02562 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.2007 0.0000 4 6 3.5742 1.2090 -0.0058 5 6 4.2770 0.0000 0.0002 6 6 5.7487 -0.0002 0.0007 7 8 6.3550 1.0500 -0.0037 8 6 6.5022 -1.3052 0.0066 9 6 8.0064 -1.0256 0.0065 10 6 8.7599 -2.3307 0.0118 11 8 8.1535 -3.3811 0.0157 12 7 10.1077 -2.3308 0.0131 13 6 10.7932 -3.5180 0.0185 14 1 10.2531 -4.4534 0.0220 15 6 12.1827 -3.5181 0.0193 16 7 12.8397 -2.3801 0.0156 17 14 13.1166 -5.1358 0.0273 18 1 13.3651 -5.5709 -1.3706 19 1 14.4137 -4.9551 0.7275 20 1 12.3136 -6.1676 0.7315 21 6 3.5742 -1.2091 0.0060 22 6 2.1953 -1.2008 0.0063 23 1 -0.3634 0.0050 1.0276 24 1 -0.3633 0.8874 -0.5183 25 1 -0.3634 -0.8925 -0.5095 26 1 1.6511 2.1335 -0.0004 27 1 4.1100 2.1467 -0.0104 28 1 6.2385 -1.8730 0.8988 29 1 6.2392 -1.8806 -0.8811 30 1 8.2704 -0.4577 -0.8856 31 1 8.2691 -0.4504 0.8943 32 1 10.5927 -1.4907 0.0104 33 1 13.8098 -2.3801 0.0166 34 1 4.1099 -2.1469 0.0110 35 1 1.6511 -2.1336 0.0112 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069484157.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:59:19 Heat of formation + Delta-G solvation = -68.991197 kcal Electronic energy + Delta-G solvation = -18043.520136 eV Core-core repulsion = 15005.759210 eV Total energy + Delta-G solvation = -3037.760927 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.13996 -38.61204 -37.91824 -34.04677 -33.22619 -32.23637 -31.23315 -30.99718 -28.10078 -25.88484 -24.04355 -22.79571 -21.99998 -19.66581 -18.95472 -17.83886 -17.10774 -16.00455 -15.51434 -15.45755 -15.27196 -14.60284 -14.16346 -14.11684 -13.92777 -13.75631 -13.72304 -13.64462 -12.53711 -12.34474 -12.30162 -11.98939 -11.81755 -11.57178 -11.38655 -11.10924 -11.09717 -10.67035 -10.38850 -10.20927 -9.56889 -9.50921 -9.17973 -8.89278 -8.39789 -7.96396 -6.40488 -3.81645 0.55871 1.20229 2.40926 3.18467 3.27021 3.32801 3.64599 3.92789 3.98816 4.21972 4.54424 4.59187 4.78941 4.94763 5.08855 5.15930 5.23461 5.25641 5.26066 5.42397 5.46436 5.57679 5.64274 5.78528 5.84741 5.99247 6.14312 6.28085 6.30652 6.36018 6.42996 6.45169 6.71320 7.55899 7.62351 8.06543 8.61171 9.17773 9.55951 10.06422 10.77120 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.052386 B = 0.003183 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.365267 B = 8794.129880 C = 9302.745367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.061 4.061 3 C -0.138 4.138 4 C -0.060 4.060 5 C -0.171 4.171 6 C 0.395 3.605 7 O -0.455 6.455 8 C -0.142 4.142 9 C -0.122 4.122 10 C 0.439 3.561 11 O -0.601 6.601 12 N -0.561 5.561 13 C -0.302 4.302 14 H 0.103 0.897 15 C 0.022 3.978 16 N -0.900 5.900 17 Si 0.931 3.069 18 H -0.278 1.278 19 H -0.283 1.283 20 H -0.269 1.269 21 C -0.065 4.065 22 C -0.135 4.135 23 H 0.073 0.927 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.126 0.874 27 H 0.133 0.867 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.394 0.606 33 H 0.272 0.728 34 H 0.139 0.861 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.736 6.414 0.004 21.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.061 4.061 3 C -0.156 4.156 4 C -0.078 4.078 5 C -0.172 4.172 6 C 0.273 3.727 7 O -0.331 6.331 8 C -0.180 4.180 9 C -0.162 4.162 10 C 0.226 3.774 11 O -0.488 6.488 12 N -0.196 5.196 13 C -0.432 4.432 14 H 0.121 0.879 15 C -0.180 4.180 16 N -0.541 5.541 17 Si 0.758 3.242 18 H -0.204 1.204 19 H -0.209 1.209 20 H -0.194 1.194 21 C -0.083 4.083 22 C -0.153 4.153 23 H 0.092 0.908 24 H 0.087 0.913 25 H 0.088 0.912 26 H 0.144 0.856 27 H 0.151 0.849 28 H 0.123 0.877 29 H 0.123 0.877 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.228 0.772 33 H 0.082 0.918 34 H 0.156 0.844 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -20.586 6.301 0.010 21.528 hybrid contribution 0.842 -0.286 -0.005 0.890 sum -19.743 6.015 0.004 20.639 Atomic orbital electron populations 1.20869 0.91006 1.03049 1.02604 1.20201 0.96281 0.93273 0.96373 1.21002 0.93972 0.97725 1.02852 1.21433 0.93991 0.97953 0.94458 1.20628 0.95365 0.94270 1.06939 1.22744 0.88029 0.91206 0.70747 1.90501 1.71124 1.35137 1.36346 1.21688 0.95148 0.95436 1.05716 1.21275 0.93619 0.97447 1.03900 1.19904 0.83143 0.90092 0.84282 1.90495 1.68145 1.33371 1.56775 1.41912 1.04511 1.09548 1.63607 1.19727 0.88877 0.86836 1.47734 0.87889 1.25291 0.96765 0.98664 0.97254 1.69621 1.08699 1.25477 1.50283 0.85852 0.78597 0.81403 0.78390 1.20386 1.20906 1.19405 1.21609 0.94272 0.97852 0.94604 1.21052 0.94127 0.97757 1.02409 0.90796 0.91341 0.91226 0.85634 0.84944 0.87743 0.87735 0.89958 0.89951 0.77250 0.91816 0.84370 0.85404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.71 10.00 36.00 0.36 -0.35 16 2 C -0.06 -0.54 5.89 -104.50 -0.62 -1.16 16 3 C -0.14 -1.30 9.68 -39.65 -0.38 -1.68 16 4 C -0.06 -0.69 9.60 -39.11 -0.38 -1.07 16 5 C -0.17 -2.16 5.87 -105.06 -0.62 -2.78 16 6 C 0.39 5.84 7.12 -30.69 -0.22 5.62 16 7 O -0.46 -7.84 15.98 5.57 0.09 -7.75 16 8 C -0.14 -2.23 3.60 -27.88 -0.10 -2.33 16 9 C -0.12 -2.27 4.99 -27.88 -0.14 -2.41 16 10 C 0.44 10.51 7.78 -10.98 -0.09 10.43 16 11 O -0.60 -16.03 15.56 5.55 0.09 -15.94 16 12 N -0.56 -14.61 5.29 -10.96 -0.06 -14.67 16 13 C -0.30 -8.54 9.68 -14.93 -0.14 -8.69 16 14 H 0.10 3.02 7.16 -52.48 -0.38 2.65 16 15 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 16 N -0.90 -24.96 13.05 55.50 0.72 -24.23 16 17 Si 0.93 21.20 29.55 -169.99 -5.02 16.18 16 18 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 21 C -0.07 -0.71 9.47 -39.10 -0.37 -1.08 16 22 C -0.14 -1.27 9.68 -39.64 -0.38 -1.65 16 23 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 24 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 25 H 0.07 0.36 8.08 -51.92 -0.42 -0.06 16 26 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 27 H 0.13 1.49 7.65 -52.49 -0.40 1.09 16 28 H 0.10 1.59 8.04 -51.93 -0.42 1.17 16 29 H 0.10 1.59 8.05 -51.93 -0.42 1.17 16 30 H 0.08 1.47 8.10 -51.93 -0.42 1.05 16 31 H 0.08 1.47 8.10 -51.93 -0.42 1.05 16 32 H 0.39 9.94 7.90 -40.82 -0.32 9.61 16 33 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 34 H 0.14 1.39 7.05 -52.49 -0.37 1.02 16 35 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 310.38 15.07 4.68 4.68 Total: -1.00 -32.38 310.38 -7.06 -39.45 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -4.39 Total: 8.92 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: -3.17 Total: -6.64 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: 0.67 Total: -38.90 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: 0.18 Total: -23.69 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.38 -7.06 -39.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069484157.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.545 kcal (2) G-P(sol) polarization free energy of solvation -32.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds