Wall clock time and date at job start Mon Mar 30 2020 00:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47104 * 2 1 4 4 N 1.46898 * 109.47183 * 186.22135 * 3 2 1 5 5 C 1.46904 * 110.99898 * 286.87614 * 4 3 2 6 6 C 1.50698 * 109.46949 * 76.43758 * 5 4 3 7 7 H 1.08005 * 120.00525 * 2.30030 * 6 5 4 8 8 C 1.37875 * 120.00090 * 182.29882 * 6 5 4 9 9 N 1.31513 * 120.00344 * 180.02562 * 8 6 5 10 10 Si 1.86803 * 119.99791 * 359.97438 * 8 6 5 11 11 H 1.48498 * 109.47432 * 90.00172 * 10 8 6 12 12 H 1.48502 * 109.46941 * 209.99898 * 10 8 6 13 13 H 1.48502 * 109.47334 * 329.99801 * 10 8 6 14 14 C 1.46905 * 111.00239 * 162.92219 * 4 3 2 15 15 H 1.08995 * 110.05003 * 311.40512 * 14 4 3 16 16 C 1.53873 * 110.02640 * 189.99496 * 14 4 3 17 17 C 1.54164 * 108.70114 * 193.52756 * 16 14 4 18 18 S 1.82923 * 105.08742 * 27.91356 * 17 16 14 19 19 O 1.42100 * 109.35163 * 111.27253 * 18 17 16 20 20 O 1.42095 * 109.35271 * 244.47460 * 18 17 16 21 21 C 1.55047 * 110.02345 * 72.80594 * 14 4 3 22 22 H 1.08993 * 109.47490 * 60.00048 * 1 2 3 23 23 H 1.09003 * 109.47192 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46951 * 299.99464 * 1 2 3 25 25 H 1.09004 * 109.46688 * 240.00122 * 2 1 3 26 26 H 1.09002 * 109.47600 * 119.99872 * 2 1 3 27 27 H 1.08998 * 109.47343 * 66.21384 * 3 2 1 28 28 H 1.09006 * 109.46982 * 306.21465 * 3 2 1 29 29 H 1.08999 * 109.47406 * 196.43535 * 5 4 3 30 30 H 1.09002 * 109.46863 * 316.44057 * 5 4 3 31 31 H 0.97001 * 120.00288 * 180.02562 * 9 8 6 32 32 H 1.08999 * 109.64377 * 73.68395 * 16 14 4 33 33 H 1.08993 * 109.65016 * 313.38183 * 16 14 4 34 34 H 1.08996 * 110.32239 * 269.00960 * 17 16 14 35 35 H 1.09004 * 110.40496 * 146.86054 * 17 16 14 36 36 H 1.09004 * 110.79400 * 43.45639 * 21 14 4 37 37 H 1.09005 * 110.79244 * 279.99323 * 21 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5012 1.4453 -0.1501 5 6 4.1583 1.0009 1.0864 6 6 4.0417 -0.4967 1.2070 7 1 3.5634 -1.0660 0.4236 8 6 4.5457 -1.1402 2.3173 9 7 4.4445 -2.4473 2.4223 10 14 5.3737 -0.1558 3.6718 11 1 4.3599 0.2536 4.6767 12 1 6.4113 -0.9916 4.3277 13 1 6.0083 1.0532 3.0880 14 6 3.9863 2.7709 -0.5569 15 1 3.3985 3.1425 -1.3962 16 6 5.4722 2.6910 -0.9484 17 6 6.0374 4.1225 -1.0379 18 16 5.0233 5.1083 0.1223 19 8 5.8223 5.4999 1.2303 20 8 4.2908 6.0847 -0.6051 21 6 3.8939 3.7587 0.6346 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8900 25 1 1.8932 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.7703 1.9233 0.9403 28 1 1.5886 1.9875 -0.8292 29 1 5.2110 1.2824 1.0599 30 1 3.6773 1.4729 1.9432 31 1 4.7987 -2.9000 3.2036 32 1 5.5704 2.1972 -1.9151 33 1 6.0203 2.1272 -0.1937 34 1 5.9339 4.5077 -2.0523 35 1 7.0838 4.1377 -0.7330 36 1 4.2438 3.2895 1.5542 37 1 2.8757 4.1298 0.7516 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071014611.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:18 Heat of formation + Delta-G solvation = -64.163013 kcal Electronic energy + Delta-G solvation = -18842.741318 eV Core-core repulsion = 15940.633709 eV Total energy + Delta-G solvation = -2902.107610 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.60778 -37.00305 -35.99650 -34.73922 -32.66387 -31.79292 -29.32123 -27.81207 -25.69902 -23.88431 -22.25172 -20.54915 -19.42152 -18.78814 -17.29035 -16.65497 -16.20286 -15.69336 -15.03359 -14.88303 -14.37362 -14.07624 -13.93547 -13.70720 -12.84526 -12.69547 -12.51651 -12.37098 -12.24159 -12.11477 -12.00760 -11.70235 -11.35804 -11.19259 -10.91502 -10.79478 -10.72411 -10.35556 -10.29250 -10.16040 -10.03191 -9.74206 -9.13366 -8.61333 -7.65700 -6.13169 -4.09468 0.07809 2.55054 3.20952 3.28919 3.31687 3.59239 4.00029 4.20895 4.33602 4.64180 4.73777 4.82742 4.93023 5.07152 5.16697 5.43149 5.58894 5.61986 5.71170 5.73288 5.92058 6.02460 6.10734 6.11799 6.18675 6.40036 6.50971 6.65124 6.74310 6.96604 7.33161 7.51494 7.69290 7.85335 8.54146 8.97044 9.47519 10.98584 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.018317 B = 0.007916 C = 0.006208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.282112 B = 3536.308441 C = 4508.954995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.129 4.129 3 C 0.070 3.930 4 N -0.506 5.506 5 C 0.152 3.848 6 C -0.510 4.510 7 H 0.094 0.906 8 C 0.070 3.930 9 N -0.896 5.896 10 Si 0.864 3.136 11 H -0.277 1.277 12 H -0.284 1.284 13 H -0.267 1.267 14 C 0.088 3.912 15 H 0.097 0.903 16 C -0.112 4.112 17 C -0.587 4.587 18 S 2.381 3.619 19 O -0.946 6.946 20 O -0.946 6.946 21 C -0.627 4.627 22 H 0.041 0.959 23 H 0.050 0.950 24 H 0.045 0.955 25 H 0.062 0.938 26 H 0.107 0.893 27 H 0.027 0.973 28 H 0.054 0.946 29 H 0.031 0.969 30 H -0.007 1.007 31 H 0.264 0.736 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.134 0.866 35 H 0.136 0.864 36 H 0.144 0.856 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.084 10.703 -6.264 12.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.167 4.167 3 C -0.058 4.058 4 N -0.228 5.228 5 C 0.026 3.974 6 C -0.548 4.548 7 H 0.112 0.888 8 C -0.132 4.132 9 N -0.534 5.534 10 Si 0.691 3.309 11 H -0.203 1.203 12 H -0.210 1.210 13 H -0.191 1.191 14 C -0.023 4.023 15 H 0.115 0.885 16 C -0.151 4.151 17 C -0.717 4.717 18 S 2.566 3.434 19 O -0.943 6.943 20 O -0.943 6.943 21 C -0.759 4.759 22 H 0.060 0.940 23 H 0.069 0.931 24 H 0.064 0.936 25 H 0.081 0.919 26 H 0.125 0.875 27 H 0.046 0.954 28 H 0.072 0.928 29 H 0.049 0.951 30 H 0.010 0.990 31 H 0.074 0.926 32 H 0.117 0.883 33 H 0.114 0.886 34 H 0.153 0.847 35 H 0.155 0.845 36 H 0.162 0.838 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.860 11.173 -6.245 12.829 hybrid contribution 0.255 0.233 1.317 1.361 sum -0.605 11.406 -4.929 12.440 Atomic orbital electron populations 1.21783 0.97634 1.00954 1.00285 1.21897 0.92880 0.96366 1.05552 1.22024 0.87194 0.98001 0.98589 1.62078 1.05430 1.19190 1.36110 1.20427 0.94075 0.97717 0.85206 1.21161 1.38083 0.89377 1.06196 0.88808 1.24889 0.95719 0.94702 0.97871 1.69869 1.46408 1.07665 1.29507 0.87041 0.80083 0.80689 0.83064 1.20255 1.21022 1.19133 1.22528 0.96284 0.89761 0.93759 0.88489 1.22033 0.94427 0.92632 1.05988 1.30436 1.14165 1.10653 1.16486 1.09144 0.78576 0.78195 0.77505 1.93596 1.68350 1.81582 1.50731 1.93588 1.71518 1.56292 1.72875 1.31363 1.15913 1.17926 1.10734 0.94018 0.93069 0.93618 0.91887 0.87492 0.95430 0.92775 0.95115 0.98961 0.92578 0.88277 0.88565 0.84733 0.84541 0.83823 0.84660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.91 37.15 0.37 -1.83 16 2 C -0.13 -2.34 4.68 -26.73 -0.13 -2.46 16 3 C 0.07 1.17 4.62 -3.82 -0.02 1.15 16 4 N -0.51 -9.06 4.43 -226.24 -1.00 -10.06 16 5 C 0.15 3.23 2.36 -4.97 -0.01 3.22 16 6 C -0.51 -13.05 7.57 -34.44 -0.26 -13.31 16 7 H 0.09 2.58 6.17 -52.48 -0.32 2.26 16 8 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 9 N -0.90 -25.90 13.96 55.43 0.77 -25.12 16 10 Si 0.86 20.34 27.42 -169.99 -4.66 15.68 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.27 -5.96 6.61 56.52 0.37 -5.58 16 14 C 0.09 1.23 2.61 -66.17 -0.17 1.06 16 15 H 0.10 1.14 7.84 -51.93 -0.41 0.73 16 16 C -0.11 -1.41 5.85 -25.67 -0.15 -1.56 16 17 C -0.59 -5.88 7.26 37.77 0.27 -5.60 16 18 S 2.38 30.05 6.11 -107.50 -0.66 29.40 16 19 O -0.95 -15.35 18.15 -57.71 -1.05 -16.40 16 20 O -0.95 -14.13 18.14 -57.71 -1.05 -15.17 16 21 C -0.63 -8.30 6.06 38.24 0.23 -8.07 16 22 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 24 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.06 1.18 8.00 -51.93 -0.42 0.77 16 26 H 0.11 2.34 5.49 -51.93 -0.29 2.06 16 27 H 0.03 0.47 7.69 -51.93 -0.40 0.07 16 28 H 0.05 0.78 7.78 -51.93 -0.40 0.38 16 29 H 0.03 0.65 5.01 -51.93 -0.26 0.39 16 30 H -0.01 -0.16 6.13 -51.93 -0.32 -0.47 16 31 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 32 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.10 1.37 5.99 -51.93 -0.31 1.05 16 34 H 0.13 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.14 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.14 2.11 6.11 -51.93 -0.32 1.79 16 37 H 0.14 1.56 8.14 -51.93 -0.42 1.14 16 LS Contribution 296.94 15.07 4.47 4.47 Total: -1.00 -32.29 296.94 -8.69 -40.98 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -5.56 Total: 1.83 kcal Atomic # 6 Polarization: -25.64 SS G_CDS: 0.04 Total: -25.60 kcal Atomic # 7 Polarization: -34.95 SS G_CDS: -0.23 Total: -35.18 kcal Atomic # 8 Polarization: -29.48 SS G_CDS: -2.09 Total: -31.57 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -4.66 Total: 15.68 kcal Atomic # 16 Polarization: 30.05 SS G_CDS: -0.66 Total: 29.40 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -32.29 -8.69 -40.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071014611.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.182 kcal (2) G-P(sol) polarization free energy of solvation -32.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds