Wall clock time and date at job start Mon Mar 30 2020 00:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47159 * 2 1 4 4 N 1.46907 * 109.46988 * 180.02562 * 3 2 1 5 5 C 1.46899 * 110.99769 * 190.00248 * 4 3 2 6 6 C 1.50703 * 109.47107 * 66.04798 * 5 4 3 7 7 H 1.07996 * 119.99751 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00001 * 180.02562 * 6 5 4 9 9 N 1.31517 * 120.00094 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99955 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46999 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.46942 * 119.99666 * 10 8 6 13 13 H 1.48504 * 109.46979 * 239.99580 * 10 8 6 14 14 C 1.46896 * 110.99805 * 66.04968 * 4 3 2 15 15 H 1.08995 * 109.64691 * 310.42567 * 14 4 3 16 16 C 1.53882 * 109.64976 * 70.72541 * 14 4 3 17 17 C 1.55038 * 106.62721 * 167.03043 * 16 14 4 18 18 S 1.83295 * 102.56751 * 317.56719 * 17 16 14 19 19 O 1.42094 * 109.34915 * 269.81268 * 18 17 16 20 20 O 1.42099 * 109.47351 * 136.64462 * 18 17 16 21 21 C 1.54166 * 109.64490 * 189.99755 * 14 4 3 22 22 H 1.09000 * 109.47613 * 179.97438 * 1 2 3 23 23 H 1.09009 * 109.46851 * 299.99187 * 1 2 3 24 24 H 1.09001 * 109.47540 * 59.99515 * 1 2 3 25 25 H 1.09009 * 109.46851 * 240.00813 * 2 1 3 26 26 H 1.08999 * 109.47544 * 120.01028 * 2 1 3 27 27 H 1.08996 * 109.46593 * 60.00974 * 3 2 1 28 28 H 1.09001 * 109.47290 * 300.00638 * 3 2 1 29 29 H 1.09002 * 109.47043 * 186.04778 * 5 4 3 30 30 H 1.09001 * 109.47354 * 306.04839 * 5 4 3 31 31 H 0.97000 * 120.00333 * 179.97438 * 9 8 6 32 32 H 1.09002 * 110.02313 * 286.32754 * 16 14 4 33 33 H 1.09003 * 110.02634 * 47.73693 * 16 14 4 34 34 H 1.08993 * 110.79207 * 199.29725 * 17 16 14 35 35 H 1.09005 * 110.79119 * 75.83305 * 17 16 14 36 36 H 1.08995 * 110.31860 * 331.14463 * 21 14 4 37 37 H 1.09003 * 110.31835 * 93.33776 * 21 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0355 2.7930 0.2376 6 6 3.6776 3.2327 1.6339 7 1 3.1149 2.5748 2.2796 8 6 4.0676 4.4752 2.0867 9 7 4.7525 5.2766 1.3002 10 14 3.6246 5.0199 3.8177 11 1 2.8577 3.9433 4.4943 12 1 4.8669 5.2987 4.5820 13 1 2.7966 6.2510 3.7526 14 6 4.0348 0.8859 -1.2542 15 1 3.5446 -0.0639 -1.4676 16 6 3.7732 1.8706 -2.4075 17 6 4.6298 1.3877 -3.6061 18 16 6.2196 0.9460 -2.8079 19 8 7.0718 2.0830 -2.7951 20 8 6.6902 -0.2853 -3.3387 21 6 5.5555 0.6671 -1.1265 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 1.8932 -0.5138 -0.8901 26 1 1.8933 -0.5140 0.8899 27 1 1.6767 1.9562 0.8901 28 1 1.6765 1.9564 -0.8899 29 1 5.1198 2.7852 0.1258 30 1 3.6009 3.4850 -0.4838 31 1 5.0265 6.1509 1.6185 32 1 2.7166 1.8596 -2.6751 33 1 4.0741 2.8766 -2.1149 34 1 4.7701 2.1905 -4.3298 35 1 4.1781 0.5149 -4.0777 36 1 5.9837 1.3846 -0.4266 37 1 5.7653 -0.3518 -0.8010 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071014613.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:20 Heat of formation + Delta-G solvation = -95.564559 kcal Electronic energy + Delta-G solvation = -18748.545411 eV Core-core repulsion = 15845.076128 eV Total energy + Delta-G solvation = -2903.469283 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.96992 -38.07060 -37.07745 -35.51810 -34.95922 -33.06620 -30.62677 -29.02012 -26.41904 -25.44863 -23.95983 -22.47982 -20.34711 -19.81243 -18.71090 -17.77270 -17.51466 -16.80356 -16.49137 -16.20826 -15.99652 -15.28620 -15.03126 -14.85540 -14.47346 -14.06503 -13.77984 -13.39011 -13.31555 -13.11752 -13.09407 -12.95630 -12.75130 -12.65482 -12.54974 -12.43259 -12.09531 -11.91675 -11.71967 -11.53702 -11.36103 -11.10434 -11.04591 -10.58624 -8.95038 -8.19161 -6.27764 -0.87480 1.39330 1.41277 1.53168 1.59866 2.40010 2.64924 3.03395 3.14158 3.29708 3.50317 3.67434 3.84087 4.01623 4.05129 4.27966 4.33000 4.57644 4.60604 4.67323 4.74473 4.81822 4.92917 5.00263 5.04257 5.08071 5.23334 5.32780 5.34459 5.49861 5.56334 5.67168 6.09575 6.36067 6.65365 6.89520 7.41489 8.91260 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.017039 B = 0.007460 C = 0.005604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.884663 B = 3752.366360 C = 4995.591229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 C 0.058 3.942 4 N -0.529 5.529 5 C 0.195 3.805 6 C -0.521 4.521 7 H 0.062 0.938 8 C 0.002 3.998 9 N -0.932 5.932 10 Si 0.962 3.038 11 H -0.264 1.264 12 H -0.283 1.283 13 H -0.280 1.280 14 C 0.083 3.917 15 H 0.132 0.868 16 C -0.164 4.164 17 C -0.550 4.550 18 S 2.389 3.611 19 O -0.989 6.989 20 O -0.969 6.969 21 C -0.582 4.582 22 H 0.069 0.931 23 H 0.045 0.955 24 H 0.058 0.942 25 H 0.077 0.923 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.032 0.968 29 H 0.012 0.988 30 H -0.020 1.020 31 H 0.263 0.737 32 H 0.115 0.885 33 H 0.066 0.934 34 H 0.151 0.849 35 H 0.175 0.825 36 H 0.122 0.878 37 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.482 -10.957 -8.210 15.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C -0.070 4.070 4 N -0.252 5.252 5 C 0.069 3.931 6 C -0.559 4.559 7 H 0.080 0.920 8 C -0.196 4.196 9 N -0.572 5.572 10 Si 0.787 3.213 11 H -0.188 1.188 12 H -0.209 1.209 13 H -0.205 1.205 14 C -0.027 4.027 15 H 0.149 0.851 16 C -0.204 4.204 17 C -0.683 4.683 18 S 2.577 3.423 19 O -0.986 6.986 20 O -0.966 6.966 21 C -0.712 4.712 22 H 0.088 0.912 23 H 0.064 0.936 24 H 0.077 0.923 25 H 0.095 0.905 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.050 0.950 29 H 0.030 0.970 30 H -0.002 1.002 31 H 0.072 0.928 32 H 0.134 0.866 33 H 0.085 0.915 34 H 0.169 0.831 35 H 0.193 0.807 36 H 0.140 0.860 37 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -5.274 -11.171 -8.163 14.806 hybrid contribution -0.689 1.583 0.767 1.890 sum -5.963 -9.587 -7.395 13.497 Atomic orbital electron populations 1.21706 0.94681 1.02288 1.01724 1.21558 0.96176 0.95036 1.02586 1.22132 0.86732 0.97743 1.00413 1.62239 1.08177 1.24105 1.30667 1.19543 0.94387 0.84098 0.95111 1.21519 1.34503 1.00241 0.99683 0.92004 1.25836 0.95243 0.96888 1.01633 1.70081 1.39384 1.09753 1.38013 0.85445 0.77913 0.78211 0.79716 1.18770 1.20872 1.20550 1.22346 0.91563 0.99977 0.88858 0.85067 1.23031 1.03760 1.00839 0.92782 1.30353 1.16814 1.13464 1.07660 1.08829 0.79516 0.74091 0.79888 1.93564 1.65793 1.52580 1.86635 1.93538 1.80568 1.44895 1.77633 1.30600 1.06430 1.12926 1.21277 0.91154 0.93572 0.92333 0.90465 0.92239 0.92442 0.95012 0.96957 1.00220 0.92826 0.86631 0.91524 0.83096 0.80737 0.86023 0.82133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 9.91 71.98 0.71 -2.23 16 2 C -0.12 -2.81 5.88 30.59 0.18 -2.63 16 3 C 0.06 1.89 4.70 86.30 0.41 2.30 16 4 N -0.53 -19.79 4.46 -871.46 -3.88 -23.67 16 5 C 0.19 9.52 3.66 85.56 0.31 9.83 16 6 C -0.52 -28.31 8.37 25.60 0.21 -28.10 16 7 H 0.06 3.32 7.18 -2.91 -0.02 3.30 16 8 C 0.00 0.12 5.46 84.65 0.46 0.58 16 9 N -0.93 -55.28 13.29 21.45 0.28 -54.99 16 10 Si 0.96 43.78 29.54 68.60 2.03 45.81 16 11 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 12 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 13 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 14 C 0.08 2.33 2.48 45.61 0.11 2.44 16 15 H 0.13 2.70 6.08 -2.39 -0.01 2.68 16 16 C -0.16 -4.22 5.05 31.59 0.16 -4.06 16 17 C -0.55 -10.53 7.31 72.68 0.53 -10.00 16 18 S 2.39 65.51 6.10 -56.49 -0.34 65.17 16 19 O -0.99 -37.55 18.14 -127.47 -2.31 -39.86 16 20 O -0.97 -29.58 18.15 -127.47 -2.31 -31.89 16 21 C -0.58 -16.66 6.74 72.38 0.49 -16.18 16 22 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 23 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 24 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.08 1.52 6.36 -2.38 -0.02 1.51 16 26 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.06 2.23 6.65 -2.39 -0.02 2.22 16 28 H 0.03 0.98 6.77 -2.39 -0.02 0.97 16 29 H 0.01 0.66 5.98 -2.39 -0.01 0.65 16 30 H -0.02 -1.03 6.57 -2.39 -0.02 -1.05 16 31 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 32 H 0.12 2.48 7.27 -2.39 -0.02 2.47 16 33 H 0.07 2.23 5.95 -2.39 -0.01 2.22 16 34 H 0.15 2.51 8.14 -2.39 -0.02 2.49 16 35 H 0.17 2.00 8.14 -2.38 -0.02 1.98 16 36 H 0.12 4.38 5.97 -2.39 -0.01 4.36 16 37 H 0.16 3.68 8.14 -2.39 -0.02 3.66 16 Total: -1.00 -73.95 300.64 -1.91 -75.86 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: 1.06 Total: 11.62 kcal Atomic # 6 Polarization: -51.63 SS G_CDS: 3.58 Total: -48.04 kcal Atomic # 7 Polarization: -75.06 SS G_CDS: -3.60 Total: -78.66 kcal Atomic # 8 Polarization: -67.12 SS G_CDS: -4.63 Total: -71.75 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: 65.51 SS G_CDS: -0.34 Total: 65.17 kcal Total: -73.95 -1.91 -75.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071014613.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.708 kcal (2) G-P(sol) polarization free energy of solvation -73.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds