Wall clock time and date at job start Mon Mar 30 2020 00:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.52999 * 109.47592 * 239.99805 * 2 1 3 5 5 C 1.52997 * 109.47592 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.47165 * 60.00300 * 5 4 2 7 7 N 1.46500 * 109.47249 * 180.02562 * 6 5 4 8 8 S 1.65604 * 119.99632 * 264.99476 * 7 6 5 9 9 O 1.42094 * 106.40087 * 178.53773 * 8 7 6 10 10 O 1.42098 * 106.40218 * 311.46123 * 8 7 6 11 11 C 1.76205 * 107.21449 * 65.00196 * 8 7 6 12 12 H 1.08000 * 120.00188 * 359.97438 * 11 8 7 13 13 C 1.37877 * 119.99751 * 179.97438 * 11 8 7 14 14 N 1.31515 * 120.00130 * 180.02562 * 13 11 8 15 15 Si 1.86800 * 119.99974 * 359.97438 * 13 11 8 16 16 H 1.48506 * 109.47050 * 90.00592 * 15 13 11 17 17 H 1.48505 * 109.47147 * 210.00109 * 15 13 11 18 18 H 1.48496 * 109.47186 * 330.00447 * 15 13 11 19 19 C 1.53002 * 109.46972 * 300.00293 * 6 5 4 20 20 C 1.52997 * 109.47415 * 59.99860 * 19 6 5 21 21 H 1.09001 * 109.47375 * 299.99867 * 1 2 3 22 22 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 23 23 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 25 25 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 26 26 H 1.09001 * 109.47289 * 60.00075 * 3 2 1 27 27 H 1.09000 * 109.47160 * 300.00333 * 4 2 1 28 28 H 1.09002 * 109.46719 * 60.00054 * 4 2 1 29 29 H 1.09000 * 109.47140 * 300.00346 * 5 4 2 30 30 H 1.09001 * 109.47375 * 180.02562 * 5 4 2 31 31 H 1.08996 * 109.47134 * 59.99508 * 6 5 4 32 32 H 0.96993 * 120.00014 * 84.99882 * 7 6 5 33 33 H 0.97000 * 120.00425 * 179.97438 * 14 13 11 34 34 H 1.09000 * 109.46986 * 299.99742 * 19 6 5 35 35 H 1.09001 * 109.47601 * 180.02562 * 19 6 5 36 36 H 1.09001 * 109.46922 * 180.02562 * 20 19 6 37 37 H 1.09000 * 109.47140 * 59.99976 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5701 -0.7207 -1.2495 6 6 4.0806 -1.4416 -0.0003 7 7 5.5456 -1.4405 -0.0003 8 16 6.3745 -2.7398 -0.6063 9 8 7.7550 -2.4216 -0.4968 10 8 5.7942 -3.8958 -0.0179 11 6 6.0193 -2.8271 -2.3300 12 1 5.3616 -2.1003 -2.7833 13 6 6.5810 -3.8234 -3.1000 14 7 6.3163 -3.8883 -4.3866 15 14 7.7191 -5.0802 -2.3160 16 1 6.9229 -6.2398 -1.8397 17 1 8.7135 -5.5407 -3.3182 18 1 8.4255 -4.4593 -1.1668 19 6 3.5705 -0.7204 1.2490 20 6 2.0405 -0.7209 1.2493 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.6767 -1.7489 -1.2492 28 1 1.6768 -0.2074 -2.1392 29 1 3.9330 0.3071 -1.2497 30 1 3.9334 -1.2342 -2.1397 31 1 3.7176 -2.4693 0.0000 32 1 6.0300 -0.6789 0.3547 33 1 6.7118 -4.5890 -4.9284 34 1 3.9335 0.3074 1.2488 35 1 3.9345 -1.2336 2.1390 36 1 1.6772 -0.2067 2.1391 37 1 1.6776 -1.7487 1.2495 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079679346.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:05:14 Heat of formation + Delta-G solvation = -110.942216 kcal Electronic energy + Delta-G solvation = -18990.889769 eV Core-core repulsion = 16086.753661 eV Total energy + Delta-G solvation = -2904.136108 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.46309 -35.61214 -34.85767 -34.38148 -33.01466 -30.64222 -30.39976 -27.30626 -26.39095 -25.21321 -22.53232 -20.87997 -19.14243 -18.30893 -17.38788 -16.57874 -15.85622 -15.06038 -14.78810 -14.69231 -13.98043 -13.91644 -13.41805 -13.30174 -12.84741 -12.80587 -12.35652 -12.18368 -11.81507 -11.75382 -11.53077 -11.49199 -11.33937 -10.88402 -10.77079 -10.64632 -10.56528 -10.47244 -10.22881 -10.08424 -9.90024 -9.63270 -9.18327 -9.04410 -8.53058 -6.77513 -5.30743 2.14291 3.09209 3.19814 3.29488 3.97810 4.34332 4.62781 4.74943 4.80764 4.92321 5.16620 5.33003 5.41117 5.49098 5.57050 5.66448 5.69549 5.74502 5.75216 5.81756 5.88182 6.00620 6.05686 6.10539 6.16315 6.21510 6.32472 6.36139 6.40114 6.47684 6.59672 6.79763 6.88882 7.50962 7.82528 8.26656 8.74197 10.34295 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.033517 B = 0.006597 C = 0.006059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.190676 B = 4243.426989 C = 4620.139501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.068 4.068 3 C -0.144 4.144 4 C -0.106 4.106 5 C -0.147 4.147 6 C 0.159 3.841 7 N -1.121 6.121 8 S 2.674 3.326 9 O -1.012 7.012 10 O -1.014 7.014 11 C -1.015 5.015 12 H 0.126 0.874 13 C 0.154 3.846 14 N -0.824 5.824 15 Si 0.800 3.200 16 H -0.247 1.247 17 H -0.256 1.256 18 H -0.221 1.221 19 C -0.125 4.125 20 C -0.105 4.105 21 H 0.051 0.949 22 H 0.052 0.948 23 H 0.054 0.946 24 H 0.064 0.936 25 H 0.051 0.949 26 H 0.049 0.951 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.403 0.597 33 H 0.280 0.720 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.542 8.200 7.750 14.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.068 4.068 3 C -0.201 4.201 4 C -0.144 4.144 5 C -0.186 4.186 6 C 0.051 3.949 7 N -0.875 5.875 8 S 2.775 3.225 9 O -1.002 7.002 10 O -1.003 7.003 11 C -1.149 5.149 12 H 0.144 0.856 13 C -0.065 4.065 14 N -0.453 5.453 15 Si 0.621 3.379 16 H -0.171 1.171 17 H -0.180 1.180 18 H -0.143 1.143 19 C -0.164 4.164 20 C -0.144 4.144 21 H 0.070 0.930 22 H 0.072 0.928 23 H 0.073 0.927 24 H 0.083 0.917 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.104 0.896 31 H 0.108 0.892 32 H 0.235 0.765 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.065 7.386 8.028 14.184 hybrid contribution 0.380 -0.018 -0.428 0.573 sum -8.685 7.369 7.600 13.693 Atomic orbital electron populations 1.21857 0.94957 1.01647 1.01283 1.20584 0.94876 0.95616 0.95752 1.21972 1.01841 0.95277 1.01036 1.21567 0.95664 1.00560 0.96631 1.22268 0.95047 1.01574 0.99705 1.20629 0.79366 1.00560 0.94306 1.55546 1.14369 1.37560 1.79996 1.01358 0.72290 0.71762 0.77057 1.93467 1.33509 1.83998 1.89249 1.93400 1.78774 1.48218 1.79937 1.30586 1.43146 1.24306 1.16895 0.85591 1.24418 0.92703 0.95081 0.94339 1.69987 1.38674 1.31299 1.05359 0.87883 0.82694 0.84450 0.82915 1.17072 1.17995 1.14278 1.21870 0.95566 1.00980 0.97989 1.21564 0.95091 1.00700 0.97001 0.93029 0.92846 0.92671 0.91740 0.92987 0.93224 0.91625 0.91944 0.91568 0.89589 0.89159 0.76541 0.90982 0.91411 0.91545 0.92037 0.91605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 8.48 37.16 0.31 -1.03 16 2 C -0.07 -0.76 0.77 -154.51 -0.12 -0.88 16 3 C -0.14 -1.49 7.78 37.16 0.29 -1.20 16 4 C -0.11 -1.40 4.73 -26.73 -0.13 -1.53 16 5 C -0.15 -2.33 5.25 -26.73 -0.14 -2.47 16 6 C 0.16 2.67 2.79 -67.93 -0.19 2.48 16 7 N -1.12 -21.30 5.47 -4.89 -0.03 -21.33 16 8 S 2.67 66.82 4.22 -107.50 -0.45 66.37 16 9 O -1.01 -27.41 16.02 -57.17 -0.92 -28.32 16 10 O -1.01 -27.18 16.17 -57.17 -0.92 -28.11 16 11 C -1.02 -27.96 10.11 30.60 0.31 -27.65 16 12 H 0.13 3.43 5.86 -52.49 -0.31 3.13 16 13 C 0.15 4.41 5.47 -17.82 -0.10 4.31 16 14 N -0.82 -23.68 13.96 55.43 0.77 -22.91 16 15 Si 0.80 20.73 26.54 -169.99 -4.51 16.22 16 16 H -0.25 -6.26 7.11 56.52 0.40 -5.85 16 17 H -0.26 -6.09 7.11 56.52 0.40 -5.69 16 18 H -0.22 -5.85 5.60 56.52 0.32 -5.53 16 19 C -0.13 -1.64 5.18 -26.73 -0.14 -1.78 16 20 C -0.11 -1.20 4.73 -26.73 -0.13 -1.32 16 21 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 22 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.71 4.81 -51.93 -0.25 0.46 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.07 0.96 6.43 -51.93 -0.33 0.63 16 30 H 0.09 1.61 5.74 -51.93 -0.30 1.31 16 31 H 0.09 1.67 7.50 -51.93 -0.39 1.28 16 32 H 0.40 6.54 8.84 -34.47 -0.30 6.24 16 33 H 0.28 7.33 8.31 -40.82 -0.34 6.99 16 34 H 0.07 0.80 6.43 -51.93 -0.33 0.47 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 292.81 15.07 4.41 4.41 Total: -1.00 -31.88 292.81 -7.33 -39.21 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -5.66 Total: 5.53 kcal Atomic # 6 Polarization: -31.05 SS G_CDS: -0.02 Total: -31.07 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: 0.75 Total: -44.24 kcal Atomic # 8 Polarization: -54.59 SS G_CDS: -1.84 Total: -56.43 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.51 Total: 16.22 kcal Atomic # 16 Polarization: 66.82 SS G_CDS: -0.45 Total: 66.37 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.88 -7.33 -39.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079679346.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.730 kcal (2) G-P(sol) polarization free energy of solvation -31.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds