Wall clock time and date at job start Mon Mar 30 2020 00:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.52999 * 109.47592 * 239.99805 * 2 1 3 5 5 C 1.52997 * 109.47592 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.47165 * 60.00300 * 5 4 2 7 7 N 1.46500 * 109.47249 * 180.02562 * 6 5 4 8 8 S 1.65604 * 119.99632 * 264.99476 * 7 6 5 9 9 O 1.42094 * 106.40087 * 178.53773 * 8 7 6 10 10 O 1.42098 * 106.40218 * 311.46123 * 8 7 6 11 11 C 1.76205 * 107.21449 * 65.00196 * 8 7 6 12 12 H 1.08000 * 120.00188 * 359.97438 * 11 8 7 13 13 C 1.37877 * 119.99751 * 179.97438 * 11 8 7 14 14 N 1.31515 * 120.00130 * 180.02562 * 13 11 8 15 15 Si 1.86800 * 119.99974 * 359.97438 * 13 11 8 16 16 H 1.48506 * 109.47050 * 90.00592 * 15 13 11 17 17 H 1.48505 * 109.47147 * 210.00109 * 15 13 11 18 18 H 1.48496 * 109.47186 * 330.00447 * 15 13 11 19 19 C 1.53002 * 109.46972 * 300.00293 * 6 5 4 20 20 C 1.52997 * 109.47415 * 59.99860 * 19 6 5 21 21 H 1.09001 * 109.47375 * 299.99867 * 1 2 3 22 22 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 23 23 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 25 25 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 26 26 H 1.09001 * 109.47289 * 60.00075 * 3 2 1 27 27 H 1.09000 * 109.47160 * 300.00333 * 4 2 1 28 28 H 1.09002 * 109.46719 * 60.00054 * 4 2 1 29 29 H 1.09000 * 109.47140 * 300.00346 * 5 4 2 30 30 H 1.09001 * 109.47375 * 180.02562 * 5 4 2 31 31 H 1.08996 * 109.47134 * 59.99508 * 6 5 4 32 32 H 0.96993 * 120.00014 * 84.99882 * 7 6 5 33 33 H 0.97000 * 120.00425 * 179.97438 * 14 13 11 34 34 H 1.09000 * 109.46986 * 299.99742 * 19 6 5 35 35 H 1.09001 * 109.47601 * 180.02562 * 19 6 5 36 36 H 1.09001 * 109.46922 * 180.02562 * 20 19 6 37 37 H 1.09000 * 109.47140 * 59.99976 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5701 -0.7207 -1.2495 6 6 4.0806 -1.4416 -0.0003 7 7 5.5456 -1.4405 -0.0003 8 16 6.3745 -2.7398 -0.6063 9 8 7.7550 -2.4216 -0.4968 10 8 5.7942 -3.8958 -0.0179 11 6 6.0193 -2.8271 -2.3300 12 1 5.3616 -2.1003 -2.7833 13 6 6.5810 -3.8234 -3.1000 14 7 6.3163 -3.8883 -4.3866 15 14 7.7191 -5.0802 -2.3160 16 1 6.9229 -6.2398 -1.8397 17 1 8.7135 -5.5407 -3.3182 18 1 8.4255 -4.4593 -1.1668 19 6 3.5705 -0.7204 1.2490 20 6 2.0405 -0.7209 1.2493 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.6767 -1.7489 -1.2492 28 1 1.6768 -0.2074 -2.1392 29 1 3.9330 0.3071 -1.2497 30 1 3.9334 -1.2342 -2.1397 31 1 3.7176 -2.4693 0.0000 32 1 6.0300 -0.6789 0.3547 33 1 6.7118 -4.5890 -4.9284 34 1 3.9335 0.3074 1.2488 35 1 3.9345 -1.2336 2.1390 36 1 1.6772 -0.2067 2.1391 37 1 1.6776 -1.7487 1.2495 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079679346.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:05:13 Heat of formation + Delta-G solvation = -134.468065 kcal Electronic energy + Delta-G solvation = -18991.909926 eV Core-core repulsion = 16086.753661 eV Total energy + Delta-G solvation = -2905.156266 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.53120 -37.67767 -36.48892 -36.18815 -35.17890 -31.71060 -31.68029 -28.53644 -28.08526 -26.31629 -23.64199 -22.09716 -21.06556 -19.65970 -19.20519 -18.47518 -17.37559 -16.98773 -16.00268 -15.85847 -15.64318 -15.31842 -15.06213 -14.79102 -14.46828 -14.21878 -13.56839 -13.44037 -13.32174 -13.08766 -12.83340 -12.69830 -12.64160 -12.57108 -12.50134 -12.47097 -11.97326 -11.89886 -11.66047 -11.33629 -11.27959 -11.10192 -11.01635 -10.79496 -10.12926 -8.94557 -7.49204 0.17963 1.04109 1.13267 1.20938 1.89078 2.43085 2.58649 3.32535 3.76185 3.81612 3.92187 4.11951 4.19548 4.31243 4.44895 4.52045 4.62529 4.65379 4.67024 4.78471 4.94932 4.97722 5.05850 5.14753 5.19196 5.21825 5.25650 5.30129 5.32979 5.41878 5.51408 5.56610 5.60918 5.74113 6.11269 6.36947 6.56875 8.22248 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.033517 B = 0.006597 C = 0.006059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.190676 B = 4243.426989 C = 4620.139501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.065 4.065 3 C -0.144 4.144 4 C -0.105 4.105 5 C -0.145 4.145 6 C 0.150 3.850 7 N -1.106 6.106 8 S 2.693 3.307 9 O -1.033 7.033 10 O -1.033 7.033 11 C -1.034 5.034 12 H 0.117 0.883 13 C 0.111 3.889 14 N -0.852 5.852 15 Si 0.821 3.179 16 H -0.241 1.241 17 H -0.220 1.220 18 H -0.231 1.231 19 C -0.119 4.119 20 C -0.104 4.104 21 H 0.067 0.933 22 H 0.056 0.944 23 H 0.051 0.949 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.066 0.934 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.048 0.952 31 H 0.068 0.932 32 H 0.419 0.581 33 H 0.290 0.710 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.087 0.913 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.392 9.339 9.144 16.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.065 4.065 3 C -0.201 4.201 4 C -0.144 4.144 5 C -0.184 4.184 6 C 0.043 3.957 7 N -0.865 5.865 8 S 2.793 3.207 9 O -1.023 7.023 10 O -1.023 7.023 11 C -1.167 5.167 12 H 0.135 0.865 13 C -0.106 4.106 14 N -0.483 5.483 15 Si 0.638 3.362 16 H -0.164 1.164 17 H -0.143 1.143 18 H -0.154 1.154 19 C -0.158 4.158 20 C -0.142 4.142 21 H 0.086 0.914 22 H 0.075 0.925 23 H 0.071 0.929 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.085 0.915 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.254 0.746 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.088 0.912 36 H 0.106 0.894 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.907 8.523 9.395 16.095 hybrid contribution 0.578 -0.304 -0.865 1.084 sum -9.330 8.220 8.530 15.078 Atomic orbital electron populations 1.21826 0.93511 1.01841 1.02287 1.20567 0.95999 0.95815 0.94131 1.21965 1.01359 0.94632 1.02104 1.21580 0.93607 1.00610 0.98572 1.22210 0.97049 1.01618 0.97524 1.20903 0.77629 1.00219 0.96951 1.55080 1.15473 1.36762 1.79175 1.00582 0.71867 0.72423 0.75832 1.93428 1.35110 1.84614 1.89196 1.93369 1.79107 1.50099 1.79722 1.31084 1.42739 1.23996 1.18890 0.86497 1.25109 0.93925 0.96606 0.94949 1.70007 1.39748 1.32439 1.06095 0.87554 0.82413 0.83179 0.83022 1.16435 1.14258 1.15403 1.21864 0.96909 1.01408 0.95642 1.21596 0.93526 1.00891 0.98212 0.91425 0.92473 0.92944 0.92460 0.92699 0.91477 0.92655 0.91304 0.90114 0.93350 0.91410 0.74598 0.89949 0.89515 0.91237 0.89442 0.92199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 8.48 71.98 0.61 -1.64 16 2 C -0.07 -1.28 0.77 -52.18 -0.04 -1.32 16 3 C -0.14 -2.51 7.78 71.98 0.56 -1.95 16 4 C -0.11 -2.71 4.73 30.59 0.14 -2.56 16 5 C -0.15 -4.57 5.25 30.59 0.16 -4.41 16 6 C 0.15 4.95 2.79 44.99 0.13 5.07 16 7 N -1.11 -41.48 5.47 -169.39 -0.93 -42.40 16 8 S 2.69 135.23 4.22 -56.49 -0.24 134.99 16 9 O -1.03 -55.84 16.02 -128.00 -2.05 -57.89 16 10 O -1.03 -55.70 16.17 -128.00 -2.07 -57.77 16 11 C -1.03 -58.21 10.11 67.73 0.68 -57.52 16 12 H 0.12 6.63 5.86 -2.91 -0.02 6.61 16 13 C 0.11 6.41 5.47 84.65 0.46 6.87 16 14 N -0.85 -49.54 13.96 21.45 0.30 -49.24 16 15 Si 0.82 41.68 26.54 68.60 1.82 43.50 16 16 H -0.24 -11.90 7.11 99.48 0.71 -11.20 16 17 H -0.22 -9.87 7.11 99.48 0.71 -9.17 16 18 H -0.23 -12.14 5.60 99.48 0.56 -11.58 16 19 C -0.12 -2.85 5.18 30.59 0.16 -2.69 16 20 C -0.10 -2.08 4.73 30.60 0.14 -1.93 16 21 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 22 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 23 H 0.05 0.88 8.14 -2.39 -0.02 0.87 16 24 H 0.06 1.08 4.81 -2.38 -0.01 1.07 16 25 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.08 2.27 6.43 -2.39 -0.02 2.25 16 30 H 0.05 1.88 5.74 -2.39 -0.01 1.87 16 31 H 0.07 2.54 7.50 -2.39 -0.02 2.52 16 32 H 0.42 13.04 8.84 -96.75 -0.85 12.19 16 33 H 0.29 15.23 8.31 -92.71 -0.77 14.46 16 34 H 0.09 1.76 6.43 -2.39 -0.02 1.75 16 35 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -68.20 292.81 -0.09 -68.29 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: 0.06 Total: 22.60 kcal Atomic # 6 Polarization: -65.10 SS G_CDS: 3.01 Total: -62.08 kcal Atomic # 7 Polarization: -91.02 SS G_CDS: -0.63 Total: -91.64 kcal Atomic # 8 Polarization: -111.54 SS G_CDS: -4.12 Total: -115.66 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 1.82 Total: 43.50 kcal Atomic # 16 Polarization: 135.23 SS G_CDS: -0.24 Total: 134.99 kcal Total: -68.20 -0.09 -68.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079679346.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.179 kcal (2) G-P(sol) polarization free energy of solvation -68.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds