Wall clock time and date at job start Sun Mar 29 2020 23:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31377 * 1 3 3 Si 1.86807 * 119.99865 * 2 1 4 4 H 1.48507 * 109.47027 * 270.00157 * 3 2 1 5 5 H 1.48497 * 109.47028 * 29.99988 * 3 2 1 6 6 H 1.48494 * 109.46981 * 150.00013 * 3 2 1 7 7 C 1.39019 * 120.00160 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00090 * 179.97438 * 7 2 1 9 9 N 1.36902 * 120.00020 * 359.97438 * 7 2 1 10 10 C 1.34781 * 120.00077 * 180.02562 * 9 7 2 11 11 O 1.21624 * 119.99798 * 359.97438 * 10 9 7 12 12 C 1.47491 * 120.00419 * 179.97438 * 10 9 7 13 13 C 1.39791 * 120.09638 * 179.97438 * 12 10 9 14 14 C 1.37687 * 119.90369 * 179.72076 * 13 12 10 15 15 C 1.39008 * 120.09662 * 0.28555 * 14 13 12 16 16 O 1.35715 * 119.90836 * 179.97438 * 15 14 13 17 17 C 1.42903 * 116.99964 * 6.02632 * 16 15 14 18 18 C 1.53778 * 113.61136 * 256.03899 * 17 16 15 19 19 C 1.53954 * 87.01963 * 220.04441 * 18 17 16 20 20 C 1.53774 * 113.61621 * 158.43186 * 17 16 15 21 21 C 1.39014 * 120.18501 * 0.02562 * 15 14 13 22 22 C 1.37681 * 120.09755 * 359.95667 * 21 15 14 23 23 H 0.96994 * 120.00790 * 0.02562 * 1 2 3 24 24 H 0.96996 * 119.99897 * 359.97438 * 9 7 2 25 25 H 1.07997 * 120.04617 * 0.02562 * 13 12 10 26 26 H 1.08004 * 119.95449 * 180.30193 * 14 13 12 27 27 H 1.08999 * 112.84651 * 27.23165 * 17 16 15 28 28 H 1.09000 * 113.61737 * 334.56250 * 18 17 16 29 29 H 1.09001 * 113.61979 * 105.46920 * 18 17 16 30 30 H 1.08996 * 113.54218 * 270.81661 * 19 18 17 31 31 H 1.09003 * 113.67007 * 139.92630 * 19 18 17 32 32 H 1.09002 * 113.61143 * 254.52983 * 20 17 16 33 33 H 1.08998 * 113.61433 * 25.34488 * 20 17 16 34 34 H 1.08002 * 119.94927 * 179.97438 * 21 15 14 35 35 H 1.08005 * 120.04810 * 180.02562 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2478 1.6178 0.0000 4 1 2.4952 2.0465 -1.4001 5 1 1.4452 2.6527 0.7000 6 1 3.5453 1.4403 0.7000 7 6 2.0089 -1.2039 -0.0005 8 1 3.0889 -1.2039 -0.0010 9 7 1.3244 -2.3895 -0.0005 10 6 1.9984 -3.5568 -0.0005 11 8 3.2146 -3.5567 -0.0010 12 6 1.2610 -4.8341 0.0000 13 6 1.9580 -6.0459 -0.0005 14 6 1.2657 -7.2360 0.0058 15 6 -0.1243 -7.2338 0.0068 16 8 -0.8029 -8.4092 0.0125 17 6 -0.0305 -9.6035 0.1510 18 6 0.1414 -10.3818 -1.1640 19 6 -0.0554 -11.6651 -0.3367 20 6 -0.8404 -10.8045 0.6673 21 6 -0.8214 -6.0311 0.0008 22 6 -0.1370 -4.8365 -0.0052 23 1 -0.4851 0.8399 -0.0004 24 1 0.3545 -2.3896 0.0002 25 1 3.0380 -6.0485 -0.0009 26 1 1.8034 -8.1727 0.0104 27 1 0.9038 -9.4433 0.6889 28 1 -0.6553 -10.2012 -1.8857 29 1 1.1366 -10.2900 -1.5990 30 1 0.8728 -12.0694 0.0671 31 1 -0.6647 -12.4186 -0.8359 32 1 -0.6366 -11.0532 1.7088 33 1 -1.9062 -10.7388 0.4485 34 1 -1.9014 -6.0339 0.0011 35 1 -0.6794 -3.9025 -0.0094 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079860728.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:37:56 Heat of formation + Delta-G solvation = -31.051783 kcal Electronic energy + Delta-G solvation = -18471.758747 eV Core-core repulsion = 15435.642997 eV Total energy + Delta-G solvation = -3036.115750 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.37077 -38.86788 -37.53737 -35.84647 -34.04853 -31.52798 -30.60212 -29.59844 -25.98963 -25.70495 -25.07524 -22.52370 -22.27290 -19.88730 -19.38538 -18.50899 -17.95599 -16.65203 -15.83985 -15.55906 -15.01861 -14.83771 -14.45837 -14.15464 -13.68622 -13.50859 -13.17210 -13.10425 -12.75668 -12.47622 -12.09620 -11.94937 -11.60946 -11.54849 -11.30326 -11.09989 -10.80903 -10.49289 -10.41854 -10.34684 -10.23469 -9.59165 -8.74329 -8.48715 -8.07375 -7.84168 -6.52934 -3.86688 1.44072 1.68543 3.15265 3.22880 3.25161 3.29070 3.68681 4.11360 4.25726 4.26743 4.50309 4.54386 4.55764 4.92766 4.96089 5.13330 5.20211 5.32028 5.36705 5.45440 5.54545 5.62678 5.64769 5.71251 5.75448 5.91782 6.01420 6.09329 6.32916 6.57204 6.71544 6.92657 7.00237 7.45861 7.59404 7.99360 8.53594 9.08957 9.45649 10.00802 10.64285 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.058081 B = 0.003555 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.968732 B = 7873.751520 C = 8239.345157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.023 3.977 3 Si 0.934 3.066 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.295 4.295 8 H 0.107 0.893 9 N -0.546 5.546 10 C 0.471 3.529 11 O -0.600 6.600 12 C -0.131 4.131 13 C -0.038 4.038 14 C -0.215 4.215 15 C 0.124 3.876 16 O -0.304 6.304 17 C 0.054 3.946 18 C -0.158 4.158 19 C -0.141 4.141 20 C -0.131 4.131 21 C -0.156 4.156 22 C -0.064 4.064 23 H 0.275 0.725 24 H 0.393 0.607 25 H 0.134 0.866 26 H 0.126 0.874 27 H 0.100 0.900 28 H 0.092 0.908 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.129 0.871 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.118 -18.490 0.024 18.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.180 4.180 3 Si 0.761 3.239 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.425 4.425 8 H 0.125 0.875 9 N -0.180 5.180 10 C 0.259 3.741 11 O -0.488 6.488 12 C -0.134 4.134 13 C -0.057 4.057 14 C -0.234 4.234 15 C 0.079 3.921 16 O -0.218 6.218 17 C -0.003 4.003 18 C -0.195 4.195 19 C -0.178 4.178 20 C -0.169 4.169 21 C -0.174 4.174 22 C -0.084 4.084 23 H 0.085 0.915 24 H 0.228 0.772 25 H 0.151 0.849 26 H 0.144 0.856 27 H 0.118 0.882 28 H 0.110 0.890 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.111 0.889 34 H 0.147 0.853 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.664 -18.308 0.014 18.671 hybrid contribution -0.043 0.813 -0.012 0.814 sum -3.707 -17.496 0.003 17.884 Atomic orbital electron populations 1.69589 1.06098 1.28653 1.48869 1.25364 0.95689 1.00030 0.96929 0.85788 0.79286 0.80311 0.78551 1.20202 1.20752 1.19213 1.19824 0.93703 0.82184 1.46789 0.87504 1.41884 1.09443 1.04712 1.61959 1.17663 0.87434 0.83274 0.85723 1.90590 1.13340 1.87153 1.57685 1.20266 0.93299 0.94983 1.04898 1.20997 1.00487 0.90260 0.94001 1.21100 0.92852 0.98950 1.10491 1.19117 0.90613 0.85613 0.96756 1.86081 1.35981 1.12353 1.87378 1.24157 0.95937 0.82247 0.97933 1.23546 1.03111 0.95536 0.97327 1.22686 1.00795 0.96449 0.97884 1.23172 1.00641 0.93350 0.99728 1.20283 1.00058 0.89485 1.07599 1.21259 0.93492 0.97640 0.95985 0.91497 0.77165 0.84853 0.85639 0.88214 0.88979 0.90815 0.89770 0.90488 0.90600 0.88907 0.85297 0.84813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.97 13.05 55.50 0.72 -23.24 16 2 C 0.02 0.61 5.50 -17.46 -0.10 0.51 16 3 Si 0.93 20.78 29.55 -169.99 -5.02 15.76 16 4 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 7 C -0.30 -8.29 9.68 -15.00 -0.15 -8.44 16 8 H 0.11 3.12 7.15 -52.48 -0.38 2.75 16 9 N -0.55 -14.29 5.23 -11.93 -0.06 -14.35 16 10 C 0.47 11.94 7.71 -12.49 -0.10 11.85 16 11 O -0.60 -17.10 15.91 5.26 0.08 -17.02 16 12 C -0.13 -2.70 5.88 -104.96 -0.62 -3.32 16 13 C -0.04 -0.69 9.59 -39.20 -0.38 -1.07 16 14 C -0.22 -3.27 8.99 -39.50 -0.35 -3.63 16 15 C 0.12 1.90 6.69 -39.01 -0.26 1.64 16 16 O -0.30 -4.14 10.14 -18.85 -0.19 -4.33 16 17 C 0.05 0.55 3.60 -25.92 -0.09 0.46 16 18 C -0.16 -1.38 7.93 -25.83 -0.20 -1.58 16 19 C -0.14 -0.96 8.09 -25.83 -0.21 -1.17 16 20 C -0.13 -1.06 7.91 -25.92 -0.21 -1.27 16 21 C -0.16 -2.47 9.97 -39.50 -0.39 -2.86 16 22 C -0.06 -1.16 9.53 -39.20 -0.37 -1.53 16 23 H 0.28 6.94 8.31 -40.82 -0.34 6.60 16 24 H 0.39 9.73 5.92 -40.82 -0.24 9.48 16 25 H 0.13 2.43 7.64 -52.49 -0.40 2.03 16 26 H 0.13 1.54 5.94 -52.48 -0.31 1.23 16 27 H 0.10 0.97 6.06 -51.93 -0.31 0.66 16 28 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.13 1.77 8.06 -52.49 -0.42 1.34 16 35 H 0.13 2.34 6.40 -52.48 -0.34 2.00 16 LS Contribution 300.58 15.07 4.53 4.53 Total: -1.00 -31.27 300.58 -7.44 -38.71 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -4.07 Total: 10.35 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: -3.43 Total: -10.40 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.66 Total: -37.60 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -0.11 Total: -21.35 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.27 -7.44 -38.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079860728.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.656 kcal (2) G-P(sol) polarization free energy of solvation -31.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds