Wall clock time and date at job start Mon Mar 30 2020 00:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33011 * 119.99778 * 2 1 4 4 C 1.50707 * 119.99858 * 180.27558 * 3 2 1 5 5 C 1.47064 * 120.00589 * 0.27162 * 3 2 1 6 6 O 1.21630 * 119.99652 * 0.02562 * 5 3 2 7 7 N 1.34774 * 120.00032 * 180.02562 * 5 3 2 8 8 C 1.39900 * 119.99491 * 174.79984 * 7 5 3 9 9 C 1.38939 * 120.00591 * 326.10060 * 8 7 5 10 10 C 1.37997 * 119.99966 * 179.77301 * 9 8 7 11 11 C 1.38911 * 119.99750 * 0.50762 * 10 9 8 12 12 O 1.35781 * 119.99463 * 179.72581 * 11 10 9 13 13 C 1.34810 * 116.99862 * 185.93822 * 12 11 10 14 14 H 1.08001 * 120.00737 * 5.40419 * 13 12 11 15 15 C 1.38637 * 119.99709 * 185.40844 * 13 12 11 16 16 N 1.31569 * 120.00226 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00004 * 179.97438 * 15 13 12 18 18 H 1.48510 * 109.46952 * 59.99516 * 17 15 13 19 19 H 1.48496 * 109.47499 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47314 * 300.00180 * 17 15 13 21 21 C 1.38913 * 120.01282 * 359.74713 * 11 10 9 22 22 C 1.37993 * 120.00216 * 359.97438 * 21 11 10 23 23 H 1.08997 * 109.47188 * 299.72871 * 1 2 3 24 24 H 1.09000 * 109.46902 * 59.72645 * 1 2 3 25 25 H 1.09002 * 109.47066 * 179.72304 * 1 2 3 26 26 H 1.08004 * 119.99692 * 180.27340 * 2 1 3 27 27 H 1.08997 * 109.46998 * 89.99218 * 4 3 2 28 28 H 1.08997 * 109.47109 * 210.00204 * 4 3 2 29 29 H 1.09003 * 109.46902 * 329.99874 * 4 3 2 30 30 H 0.96994 * 120.00294 * 354.79865 * 7 5 3 31 31 H 1.08005 * 120.00031 * 0.02995 * 9 8 7 32 32 H 1.07993 * 119.99996 * 180.23491 * 10 9 8 33 33 H 0.97000 * 120.00134 * 180.02562 * 16 15 13 34 34 H 1.07995 * 120.00472 * 179.97438 * 21 11 10 35 35 H 1.08005 * 120.00668 * 179.97438 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1721 1.1519 0.0000 4 6 3.6791 1.1520 -0.0063 5 6 1.4368 2.4256 0.0060 6 8 0.2205 2.4256 0.0115 7 7 2.1108 3.5927 0.0055 8 6 1.4151 4.8020 -0.0986 9 6 0.2559 4.8733 -0.8613 10 6 -0.4328 6.0651 -0.9601 11 6 0.0387 7.1960 -0.3055 12 8 -0.6360 8.3699 -0.4073 13 6 -0.0621 9.4558 0.1484 14 1 0.9303 9.3866 0.5690 15 6 -0.7458 10.6614 0.1801 16 7 -1.9545 10.7460 -0.3326 17 14 0.0492 12.1660 0.9508 18 1 1.3071 12.4856 0.2290 19 1 -0.8811 13.3197 0.8579 20 1 0.3540 11.8888 2.3775 21 6 1.2004 7.1262 0.4528 22 6 1.8862 5.9332 0.5565 23 1 -0.3633 0.5096 0.8924 24 1 -0.3633 0.5181 -0.8875 25 1 -0.3633 -1.0277 -0.0050 26 1 2.0470 -0.9354 -0.0045 27 1 4.0381 1.1543 -1.0354 28 1 4.0446 2.0407 0.5082 29 1 4.0446 0.2607 0.5039 30 1 3.0780 3.5943 0.0773 31 1 -0.1084 3.9950 -1.3735 32 1 -1.3358 6.1196 -1.5499 33 1 -2.4327 11.5896 -0.3108 34 1 1.5670 8.0056 0.9613 35 1 2.7897 5.8790 1.1457 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080259762.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:22:16 Heat of formation + Delta-G solvation = -20.689317 kcal Electronic energy + Delta-G solvation = -18584.441953 eV Core-core repulsion = 15548.775553 eV Total energy + Delta-G solvation = -3035.666400 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.26359 -38.73933 -36.70484 -34.96356 -34.08106 -32.18510 -30.31073 -30.14080 -27.83315 -25.44758 -24.98273 -22.95247 -22.18401 -20.73653 -19.24165 -17.92721 -17.25613 -16.45600 -16.16301 -15.14862 -14.58137 -14.42201 -14.30960 -14.03998 -13.66223 -13.49653 -13.20542 -12.86606 -12.79414 -12.66022 -12.39647 -12.06124 -11.76678 -11.63987 -11.52395 -11.48800 -11.02793 -10.67481 -10.44197 -9.66631 -9.44933 -9.20441 -9.15268 -8.68122 -8.19002 -6.88924 -6.43144 -4.01162 1.27385 2.19363 2.29101 3.13817 3.14307 3.17953 3.38370 3.40971 3.98067 4.57746 4.64880 4.71090 5.03071 5.11777 5.23410 5.33038 5.34397 5.51404 5.57217 5.69254 5.79163 5.81449 5.97892 6.16033 6.23903 6.26888 6.37655 6.47317 6.81422 6.88042 7.02476 7.17833 7.23397 7.42511 7.76478 7.81283 8.01123 8.43471 9.02036 9.72915 10.74850 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.047596 B = 0.003784 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.142631 B = 7398.741488 C = 7838.861608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.071 4.071 3 C -0.196 4.196 4 C -0.114 4.114 5 C 0.540 3.460 6 O -0.524 6.524 7 N -0.658 5.658 8 C 0.039 3.961 9 C -0.067 4.067 10 C -0.177 4.177 11 C 0.146 3.854 12 O -0.177 6.177 13 C -0.392 4.392 14 H 0.091 0.909 15 C 0.039 3.961 16 N -0.862 5.862 17 Si 0.941 3.059 18 H -0.270 1.270 19 H -0.278 1.278 20 H -0.270 1.270 21 C -0.218 4.218 22 C -0.092 4.092 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.049 0.951 26 H 0.122 0.878 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.400 0.600 31 H 0.124 0.876 32 H 0.121 0.879 33 H 0.270 0.730 34 H 0.131 0.869 35 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.836 -16.563 0.967 19.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.091 4.091 3 C -0.199 4.199 4 C -0.171 4.171 5 C 0.330 3.670 6 O -0.402 6.402 7 N -0.303 5.303 8 C -0.054 4.054 9 C -0.087 4.087 10 C -0.197 4.197 11 C 0.092 3.908 12 O -0.080 6.080 13 C -0.468 4.468 14 H 0.108 0.892 15 C -0.165 4.165 16 N -0.497 5.497 17 Si 0.765 3.235 18 H -0.195 1.195 19 H -0.203 1.203 20 H -0.195 1.195 21 C -0.238 4.238 22 C -0.112 4.112 23 H 0.101 0.899 24 H 0.100 0.900 25 H 0.068 0.932 26 H 0.140 0.860 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.236 0.764 31 H 0.142 0.858 32 H 0.139 0.861 33 H 0.080 0.920 34 H 0.149 0.851 35 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 9.578 -16.325 0.818 18.944 hybrid contribution 1.067 0.756 0.550 1.418 sum 10.644 -15.568 1.368 18.909 Atomic orbital electron populations 1.21042 0.91653 1.00808 1.04436 1.23607 0.97321 0.96472 0.91704 1.21471 0.96293 0.93234 1.08865 1.20767 0.91052 1.02784 1.02471 1.18426 0.87465 0.83909 0.77170 1.90802 1.13393 1.87196 1.48782 1.43210 1.09915 1.04496 1.72692 1.17245 0.98041 0.85133 1.04970 1.20592 0.94294 0.96856 0.96954 1.20120 1.02799 0.91039 1.05763 1.19418 0.90978 0.87421 0.92991 1.84004 1.43648 1.12841 1.67510 1.21260 1.00800 0.85667 1.39097 0.89173 1.25286 0.95680 0.98466 0.97101 1.70035 1.11119 1.26793 1.41771 0.85789 0.78664 0.79610 0.79399 1.19512 1.20293 1.19521 1.20971 0.98593 0.98324 1.05931 1.20484 0.99896 0.92185 0.98648 0.89946 0.89988 0.93186 0.85989 0.91048 0.91767 0.91245 0.76415 0.85847 0.86138 0.91962 0.85128 0.87220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.36 8.45 36.01 0.30 -1.05 16 2 C -0.07 -0.69 9.95 -36.12 -0.36 -1.05 16 3 C -0.20 -2.11 6.00 -102.85 -0.62 -2.72 16 4 C -0.11 -0.83 9.65 36.01 0.35 -0.49 16 5 C 0.54 7.99 7.45 -12.68 -0.09 7.89 16 6 O -0.52 -9.42 10.78 5.25 0.06 -9.37 16 7 N -0.66 -9.49 5.29 -10.90 -0.06 -9.54 16 8 C 0.04 0.71 6.27 -83.65 -0.52 0.18 16 9 C -0.07 -1.35 8.64 -39.41 -0.34 -1.69 16 10 C -0.18 -3.97 9.98 -39.42 -0.39 -4.36 16 11 C 0.15 3.60 6.65 -39.08 -0.26 3.34 16 12 O -0.18 -5.10 9.75 0.01 0.00 -5.10 16 13 C -0.39 -10.99 9.44 30.88 0.29 -10.70 16 14 H 0.09 2.31 5.29 -52.49 -0.28 2.04 16 15 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 16 N -0.86 -25.48 13.67 55.48 0.76 -24.73 16 17 Si 0.94 20.51 29.55 -169.99 -5.02 15.49 16 18 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 19 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 20 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 21 C -0.22 -4.76 9.12 -39.42 -0.36 -5.12 16 22 C -0.09 -1.69 9.96 -39.41 -0.39 -2.08 16 23 H 0.08 1.07 7.22 -51.93 -0.37 0.69 16 24 H 0.08 1.04 7.22 -51.93 -0.37 0.67 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.12 0.82 8.06 -52.48 -0.42 0.39 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.43 6.64 -51.93 -0.34 0.08 16 29 H 0.07 0.40 8.07 -51.93 -0.42 -0.02 16 30 H 0.40 4.37 6.89 -40.82 -0.28 4.09 16 31 H 0.12 2.40 6.45 -52.48 -0.34 2.06 16 32 H 0.12 2.61 8.06 -52.49 -0.42 2.18 16 33 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.13 2.80 5.71 -52.49 -0.30 2.50 16 35 H 0.11 1.64 8.06 -52.48 -0.42 1.22 16 LS Contribution 299.68 15.07 4.52 4.52 Total: -1.00 -32.54 299.68 -6.20 -38.74 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -3.96 Total: 6.86 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: -2.49 Total: -16.87 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: 0.70 Total: -34.27 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: 0.06 Total: -14.47 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.54 -6.20 -38.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080259762.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.054 kcal (2) G-P(sol) polarization free energy of solvation -32.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds