Wall clock time and date at job start Mon Mar 30 2020 00:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47203 * 2 1 4 4 C 1.52997 * 109.47178 * 120.00333 * 2 1 3 5 5 N 1.46500 * 109.47116 * 178.96626 * 4 2 1 6 6 C 1.46504 * 119.99837 * 296.10372 * 5 4 2 7 7 C 1.50690 * 109.47366 * 275.27659 * 6 5 4 8 8 H 1.08005 * 120.00368 * 359.97438 * 7 6 5 9 9 C 1.37873 * 119.99978 * 179.97438 * 7 6 5 10 10 N 1.31517 * 120.00143 * 359.97438 * 9 7 6 11 11 Si 1.86813 * 120.00161 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.46917 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.46846 * 119.99749 * 11 9 7 14 14 H 1.48500 * 109.46945 * 240.00333 * 11 9 7 15 15 S 1.65603 * 120.00129 * 116.38440 * 5 4 2 16 16 O 1.42100 * 104.27701 * 19.28169 * 15 5 4 17 17 O 1.42095 * 104.27687 * 147.13606 * 15 5 4 18 18 C 1.81396 * 104.44656 * 263.21187 * 15 5 4 19 19 C 1.53007 * 117.49680 * 254.24198 * 18 15 5 20 20 C 1.53002 * 117.49589 * 185.62060 * 18 15 5 21 21 H 1.09006 * 109.47073 * 299.99921 * 1 2 3 22 22 H 1.08998 * 109.47376 * 59.99597 * 1 2 3 23 23 H 1.08998 * 109.47308 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46777 * 240.00135 * 2 1 3 25 25 H 1.09006 * 109.47019 * 308.58388 * 3 2 1 26 26 H 1.08994 * 109.47210 * 68.59162 * 3 2 1 27 27 H 1.09009 * 109.47154 * 188.59137 * 3 2 1 28 28 H 1.09002 * 109.47717 * 58.96404 * 4 2 1 29 29 H 1.09000 * 109.46877 * 298.96426 * 4 2 1 30 30 H 1.09003 * 109.46634 * 35.28178 * 6 5 4 31 31 H 1.08999 * 109.46577 * 155.27141 * 6 5 4 32 32 H 0.97003 * 119.99897 * 179.97438 * 10 9 7 33 33 H 1.08993 * 115.55407 * 39.94937 * 18 15 5 34 34 H 1.08996 * 117.49765 * 359.97438 * 19 18 15 35 35 H 1.08995 * 117.49810 * 145.02581 * 19 18 15 36 36 H 1.09005 * 117.49926 * 214.97196 * 20 18 15 37 37 H 1.08995 * 117.50485 * 0.02562 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5048 -0.7429 1.2368 6 6 4.2178 -1.4674 0.1817 7 6 4.3376 -2.9204 0.5629 8 1 3.9244 -3.2693 1.4978 9 6 4.9747 -3.8044 -0.2818 10 7 5.4774 -3.3797 -1.4205 11 14 5.1226 -5.6058 0.1903 12 1 4.4794 -5.8259 1.5105 13 1 4.4493 -6.4430 -0.8347 14 1 6.5574 -5.9801 0.2709 15 16 4.3546 0.0458 2.4192 16 8 3.4154 0.2151 3.4721 17 8 5.5215 -0.7449 2.5987 18 6 4.7781 1.6474 1.6804 19 6 6.2283 1.8617 1.2419 20 6 5.6907 2.5765 2.4833 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.5568 1.9987 -0.8034 26 1 1.8075 1.9100 0.9567 27 1 3.1192 1.4463 -0.1535 28 1 1.6616 -1.7435 1.2586 29 1 1.6919 -0.1969 2.1391 30 1 3.6661 -1.3816 -0.7545 31 1 5.2131 -1.0411 0.0572 32 1 5.9260 -4.0016 -2.0146 33 1 3.9962 2.1082 1.0768 34 1 6.9278 1.0405 1.3978 35 1 6.4005 2.4637 0.3497 36 1 5.5095 3.6488 2.4077 37 1 6.0370 2.2253 3.4553 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080935839.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:24:00 Heat of formation + Delta-G solvation = -52.177477 kcal Electronic energy + Delta-G solvation = -19099.975126 eV Core-core repulsion = 16198.387248 eV Total energy + Delta-G solvation = -2901.587878 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -37.18483 -36.95313 -36.29134 -35.25426 -33.65161 -32.03924 -27.39752 -27.09721 -25.03253 -23.13163 -22.49901 -22.35988 -19.68303 -18.08212 -17.22202 -16.61001 -16.16759 -15.60779 -15.08096 -14.61562 -14.32685 -13.83480 -13.72709 -13.23953 -12.48988 -12.29201 -12.09796 -11.98277 -11.72016 -11.65049 -11.37646 -11.25964 -11.21061 -11.04797 -10.87885 -10.86548 -10.64483 -10.53535 -10.46151 -10.25275 -10.12802 -9.80745 -9.60350 -8.39790 -7.93076 -6.01830 -4.03918 0.91985 3.18633 3.33856 3.41401 3.47475 3.60523 4.40607 4.48625 4.58634 4.76714 4.94464 5.16682 5.18635 5.26119 5.34215 5.39584 5.47660 5.66720 5.76584 5.81006 5.87022 5.96839 6.02006 6.03678 6.12325 6.28341 6.32882 6.48074 6.62372 6.78539 7.27759 7.44771 7.66547 7.96817 8.27153 8.98867 9.60421 11.06755 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.017333 B = 0.008834 C = 0.007051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.988234 B = 3168.970157 C = 3970.342146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.116 4.116 3 C -0.159 4.159 4 C 0.128 3.872 5 N -0.979 5.979 6 C 0.258 3.742 7 C -0.518 4.518 8 H 0.061 0.939 9 C 0.060 3.940 10 N -0.898 5.898 11 Si 0.895 3.105 12 H -0.272 1.272 13 H -0.285 1.285 14 H -0.283 1.283 15 S 2.629 3.371 16 O -0.975 6.975 17 O -0.936 6.936 18 C -0.702 4.702 19 C -0.122 4.122 20 C -0.136 4.136 21 H 0.052 0.948 22 H 0.051 0.949 23 H 0.056 0.944 24 H 0.084 0.916 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.037 0.963 31 H 0.035 0.965 32 H 0.261 0.739 33 H 0.161 0.839 34 H 0.118 0.882 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.427 11.832 2.473 12.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.136 4.136 3 C -0.216 4.216 4 C 0.001 3.999 5 N -0.818 5.818 6 C 0.136 3.864 7 C -0.558 4.558 8 H 0.079 0.921 9 C -0.141 4.141 10 N -0.538 5.538 11 Si 0.723 3.277 12 H -0.197 1.197 13 H -0.211 1.211 14 H -0.209 1.209 15 S 2.719 3.281 16 O -0.966 6.966 17 O -0.926 6.926 18 C -0.807 4.807 19 C -0.159 4.159 20 C -0.175 4.175 21 H 0.071 0.929 22 H 0.070 0.930 23 H 0.076 0.924 24 H 0.102 0.898 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.094 0.906 29 H 0.099 0.901 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.178 0.822 34 H 0.136 0.864 35 H 0.126 0.874 36 H 0.126 0.874 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -4.116 11.453 3.157 12.573 hybrid contribution -0.013 -0.510 -0.582 0.774 sum -4.129 10.943 2.575 11.976 Atomic orbital electron populations 1.21766 0.95280 1.01821 1.01223 1.21500 0.95214 0.96105 1.00761 1.22106 1.01571 0.96651 1.01225 1.21263 0.80057 1.01457 0.97081 1.57332 1.13689 1.63961 1.46787 1.19024 0.91057 0.91114 0.85201 1.21522 1.36088 0.93164 1.05015 0.92079 1.24914 0.95307 0.99012 0.94907 1.69929 1.38305 1.35117 1.10475 0.86484 0.77876 0.84834 0.78507 1.19673 1.21098 1.20922 1.04306 0.74376 0.75202 0.74243 1.93494 1.62300 1.87328 1.53446 1.93620 1.50724 1.63663 1.84635 1.33226 1.04076 1.24997 1.18362 1.22775 0.90970 1.03293 0.98906 1.22663 1.00022 0.98413 0.96355 0.92934 0.92957 0.92443 0.89771 0.92743 0.93026 0.91964 0.90632 0.90103 0.94475 0.94734 0.92894 0.82160 0.86375 0.87440 0.87417 0.88057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.18 37.16 0.34 -1.42 16 2 C -0.12 -1.74 2.89 -90.62 -0.26 -2.00 16 3 C -0.16 -2.11 7.90 37.16 0.29 -1.81 16 4 C 0.13 2.27 5.26 -4.04 -0.02 2.25 16 5 N -0.98 -20.17 2.26 -115.67 -0.26 -20.43 16 6 C 0.26 6.31 4.90 -5.20 -0.03 6.29 16 7 C -0.52 -14.50 9.36 -34.45 -0.32 -14.83 16 8 H 0.06 1.74 7.81 -52.48 -0.41 1.33 16 9 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 10 N -0.90 -26.00 13.29 55.43 0.74 -25.27 16 11 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 12 H -0.27 -6.67 7.11 56.52 0.40 -6.26 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 15 S 2.63 51.88 5.70 -107.50 -0.61 51.27 16 16 O -0.98 -20.36 16.35 -57.54 -0.94 -21.30 16 17 O -0.94 -22.05 16.54 -57.54 -0.95 -23.01 16 18 C -0.70 -10.46 6.17 -26.73 -0.16 -10.62 16 19 C -0.12 -1.65 10.17 -26.72 -0.27 -1.92 16 20 C -0.14 -1.67 10.30 -26.73 -0.28 -1.94 16 21 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 23 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.08 1.41 6.79 -51.93 -0.35 1.06 16 25 H 0.05 0.63 8.13 -51.93 -0.42 0.21 16 26 H 0.05 0.64 8.00 -51.93 -0.42 0.22 16 27 H 0.06 0.86 5.55 -51.92 -0.29 0.57 16 28 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 29 H 0.08 1.36 6.63 -51.93 -0.34 1.01 16 30 H 0.04 0.92 6.63 -51.93 -0.34 0.57 16 31 H 0.03 0.89 7.79 -51.93 -0.40 0.48 16 32 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 33 H 0.16 2.13 4.76 -51.93 -0.25 1.88 16 34 H 0.12 1.75 7.68 -51.93 -0.40 1.35 16 35 H 0.11 1.22 8.14 -51.93 -0.42 0.79 16 36 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 311.64 15.07 4.70 4.70 Total: -1.00 -32.55 311.64 -8.88 -41.43 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -5.72 Total: 0.02 kcal Atomic # 6 Polarization: -23.60 SS G_CDS: -0.80 Total: -24.40 kcal Atomic # 7 Polarization: -46.17 SS G_CDS: 0.48 Total: -45.69 kcal Atomic # 8 Polarization: -42.41 SS G_CDS: -1.89 Total: -44.30 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 16 Polarization: 51.88 SS G_CDS: -0.61 Total: 51.27 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.55 -8.88 -41.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080935839.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.743 kcal (2) G-P(sol) polarization free energy of solvation -32.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds