Wall clock time and date at job start Sun Mar 29 2020 23:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86795 * 120.00165 * 2 1 4 4 H 1.48498 * 109.47321 * 239.99601 * 3 2 1 5 5 H 1.48501 * 109.47286 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47341 * 119.99345 * 3 2 1 7 7 C 1.38659 * 120.00140 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00180 * 180.02562 * 7 2 1 9 9 O 1.34835 * 119.99628 * 0.02562 * 7 2 1 10 10 C 1.35748 * 116.99775 * 185.05562 * 9 7 2 11 11 C 1.38899 * 120.06661 * 354.48437 * 10 9 7 12 12 C 1.38088 * 119.92685 * 179.97438 * 11 10 9 13 13 C 1.38317 * 120.06895 * 359.74462 * 12 11 10 14 14 C 1.38284 * 120.14047 * 0.51520 * 13 12 11 15 15 C 1.50702 * 119.96831 * 179.76481 * 14 13 12 16 16 C 1.50694 * 109.46957 * 269.72398 * 15 14 13 17 17 O 1.21286 * 120.00428 * 359.97438 * 16 15 14 18 18 N 1.34782 * 120.00015 * 180.27312 * 16 15 14 19 19 C 1.46499 * 119.99962 * 179.71938 * 18 16 15 20 20 C 1.52997 * 117.50207 * 223.62147 * 19 18 16 21 21 C 1.52998 * 60.00221 * 252.51702 * 20 19 18 22 22 C 1.38125 * 120.06462 * 359.48630 * 14 13 12 23 23 H 0.96998 * 120.00132 * 0.02562 * 1 2 3 24 24 H 1.08001 * 120.03955 * 359.96211 * 11 10 9 25 25 H 1.07996 * 119.96101 * 180.02562 * 12 11 10 26 26 H 1.08006 * 119.93193 * 180.27819 * 13 12 11 27 27 H 1.09000 * 109.47283 * 149.72217 * 15 14 13 28 28 H 1.09005 * 109.46947 * 29.72148 * 15 14 13 29 29 H 0.96995 * 119.99510 * 359.72753 * 18 16 15 30 30 H 1.09004 * 115.54938 * 9.33809 * 19 18 16 31 31 H 1.08997 * 117.49360 * 0.02562 * 20 19 18 32 32 H 1.09004 * 117.50205 * 145.02107 * 20 19 18 33 33 H 1.09006 * 117.49491 * 252.51174 * 21 20 19 34 34 H 1.08991 * 117.51853 * 107.48273 * 21 20 19 35 35 H 1.08003 * 120.03206 * 180.23084 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1034 1.6963 -1.2124 5 1 1.2846 2.7464 -0.0006 6 1 3.1032 1.6964 1.2126 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3346 -2.3685 0.0005 10 6 2.0698 -3.5046 0.1077 11 6 3.4573 -3.4394 0.0956 12 6 4.2023 -4.5968 0.2053 13 6 3.5684 -5.8196 0.3324 14 6 2.1873 -5.8884 0.3393 15 6 1.5007 -7.2232 0.4727 16 6 1.2657 -7.8062 -0.8969 17 8 1.6204 -7.1975 -1.8842 18 7 0.6560 -9.0014 -1.0250 19 6 0.4220 -9.5653 -2.3567 20 6 -0.9453 -10.1967 -2.6264 21 6 0.2897 -11.0856 -2.4668 22 6 1.4365 -4.7342 0.2300 23 1 -0.4850 0.8400 -0.0004 24 1 3.9528 -2.4845 0.0003 25 1 5.2811 -4.5467 0.1964 26 1 4.1534 -6.7231 0.4226 27 1 0.5452 -7.0913 0.9803 28 1 2.1297 -7.8991 1.0522 29 1 0.3720 -9.4880 -0.2355 30 1 0.9061 -9.0413 -3.1808 31 1 -1.6709 -10.1921 -1.8130 32 1 -1.3612 -10.0879 -3.6280 33 1 0.6863 -11.5617 -3.3635 34 1 0.3770 -11.6662 -1.5485 35 1 0.3578 -4.7882 0.2392 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089600306.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:43:11 Heat of formation + Delta-G solvation = -15.067951 kcal Electronic energy + Delta-G solvation = -18392.559636 eV Core-core repulsion = 15357.136996 eV Total energy + Delta-G solvation = -3035.422640 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.88721 -38.81002 -37.26348 -36.28770 -32.98703 -32.28031 -31.72917 -29.14155 -27.10003 -25.20029 -22.65172 -22.55433 -21.55929 -21.00245 -20.25006 -17.62895 -17.11946 -16.95364 -16.39368 -15.34829 -14.90275 -14.78237 -14.34422 -14.21384 -13.96155 -13.44336 -13.37568 -12.87837 -12.58488 -12.35873 -11.95872 -11.83918 -11.58112 -11.33486 -11.21532 -10.83082 -10.74317 -10.70624 -10.56734 -10.41651 -9.74062 -9.28171 -8.84468 -8.77691 -8.00566 -7.15564 -6.38390 -3.97464 2.14237 2.45537 2.70001 3.09851 3.17257 3.19390 3.20932 3.70687 4.01953 4.54568 4.58486 4.71652 4.75099 4.92330 5.10935 5.16419 5.27773 5.34082 5.53502 5.57293 5.69340 5.77090 5.79876 5.82585 5.99340 6.23680 6.39951 6.42401 6.71939 6.98086 7.13085 7.32633 7.42282 7.45328 7.50429 7.89243 8.06674 8.32013 9.07254 9.78596 10.79916 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.033251 B = 0.003846 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.867386 B = 7278.810222 C = 7798.972821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.391 4.391 8 H 0.091 0.909 9 O -0.180 6.180 10 C 0.155 3.845 11 C -0.230 4.230 12 C -0.075 4.075 13 C -0.197 4.197 14 C -0.034 4.034 15 C -0.093 4.093 16 C 0.517 3.483 17 O -0.516 6.516 18 N -0.712 5.712 19 C 0.084 3.916 20 C -0.196 4.196 21 C -0.192 4.192 22 C -0.175 4.175 23 H 0.269 0.731 24 H 0.126 0.874 25 H 0.107 0.893 26 H 0.103 0.897 27 H 0.100 0.900 28 H 0.099 0.901 29 H 0.400 0.600 30 H 0.137 0.863 31 H 0.096 0.904 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.420 -18.386 0.333 18.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.468 4.468 8 H 0.108 0.892 9 O -0.084 6.084 10 C 0.101 3.899 11 C -0.250 4.250 12 C -0.093 4.093 13 C -0.216 4.216 14 C -0.034 4.034 15 C -0.133 4.133 16 C 0.304 3.696 17 O -0.390 6.390 18 N -0.364 5.364 19 C -0.023 4.023 20 C -0.235 4.235 21 C -0.231 4.231 22 C -0.194 4.194 23 H 0.079 0.921 24 H 0.144 0.856 25 H 0.125 0.875 26 H 0.121 0.879 27 H 0.118 0.882 28 H 0.117 0.883 29 H 0.234 0.766 30 H 0.155 0.845 31 H 0.115 0.885 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.114 0.886 35 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 1.262 -17.670 -0.406 17.719 hybrid contribution 0.301 0.468 0.337 0.651 sum 1.563 -17.201 -0.069 17.272 Atomic orbital electron populations 1.70030 1.05937 1.27644 1.46414 1.25269 0.95828 0.98758 0.96663 0.85792 0.78683 0.79857 0.79147 1.19535 1.20326 1.19541 1.21275 0.91758 0.80888 1.52850 0.89178 1.83978 1.34219 1.11368 1.78791 1.19272 0.90253 0.87960 0.92376 1.21178 0.93833 0.98971 1.10972 1.20677 0.98371 0.92328 0.97946 1.20350 0.93287 0.96927 1.10987 1.18650 0.93241 0.91726 0.99813 1.20586 1.02687 0.95923 0.94066 1.20808 0.76655 0.80022 0.92111 1.90756 1.49087 1.59185 1.39925 1.45462 1.62046 1.21469 1.07379 1.21568 0.99676 0.93145 0.87885 1.23418 0.91957 1.04467 1.03609 1.23365 1.02528 0.93457 1.03737 1.19948 0.99071 0.89998 1.10396 0.92065 0.85618 0.87470 0.87933 0.88152 0.88307 0.76637 0.84536 0.88518 0.88072 0.88038 0.88587 0.86826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.97 13.67 55.48 0.76 -25.21 16 2 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 3 Si 0.94 21.02 29.55 -169.99 -5.02 16.00 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 7 C -0.39 -11.30 9.49 30.89 0.29 -11.01 16 8 H 0.09 2.40 5.20 -52.49 -0.27 2.13 16 9 O -0.18 -5.34 9.76 0.04 0.00 -5.34 16 10 C 0.15 3.94 6.65 -39.11 -0.26 3.68 16 11 C -0.23 -5.29 9.17 -39.39 -0.36 -5.65 16 12 C -0.07 -1.47 10.04 -39.61 -0.40 -1.87 16 13 C -0.20 -3.62 9.70 -39.54 -0.38 -4.00 16 14 C -0.03 -0.63 4.37 -104.65 -0.46 -1.09 16 15 C -0.09 -1.24 5.83 -29.04 -0.17 -1.41 16 16 C 0.52 7.64 7.82 -10.99 -0.09 7.55 16 17 O -0.52 -10.27 15.60 5.55 0.09 -10.18 16 18 N -0.71 -7.60 5.57 -53.81 -0.30 -7.90 16 19 C 0.08 0.87 6.43 -67.93 -0.44 0.43 16 20 C -0.20 -1.60 10.46 -26.73 -0.28 -1.88 16 21 C -0.19 -1.42 10.46 -26.73 -0.28 -1.70 16 22 C -0.17 -3.91 9.65 -39.39 -0.38 -4.29 16 23 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 24 H 0.13 2.86 5.64 -52.49 -0.30 2.56 16 25 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 26 H 0.10 1.59 8.06 -52.48 -0.42 1.17 16 27 H 0.10 1.14 8.08 -51.93 -0.42 0.72 16 28 H 0.10 1.01 8.08 -51.93 -0.42 0.59 16 29 H 0.40 2.90 8.83 -40.82 -0.36 2.54 16 30 H 0.14 1.69 7.40 -51.93 -0.38 1.31 16 31 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.11 2.46 8.06 -52.48 -0.42 2.04 16 LS Contribution 309.30 15.07 4.66 4.66 Total: -1.00 -34.83 309.30 -7.36 -42.19 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -4.25 Total: 6.01 kcal Atomic # 6 Polarization: -16.94 SS G_CDS: -3.29 Total: -20.24 kcal Atomic # 7 Polarization: -33.56 SS G_CDS: 0.46 Total: -33.10 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: 0.09 Total: -15.52 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -34.83 -7.36 -42.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089600306.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.122 kcal (2) G-P(sol) polarization free energy of solvation -34.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds