Wall clock time and date at job start Sun Mar 29 2020 23:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86798 * 120.00019 * 2 1 4 4 H 1.48511 * 109.47133 * 270.00084 * 3 2 1 5 5 H 1.48498 * 109.47155 * 30.00019 * 3 2 1 6 6 H 1.48506 * 109.47595 * 150.00224 * 3 2 1 7 7 C 1.38657 * 120.00471 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99421 * 0.02562 * 7 2 1 9 9 O 1.34827 * 120.00450 * 179.97438 * 7 2 1 10 10 C 1.35756 * 116.99878 * 185.05863 * 9 7 2 11 11 C 1.38894 * 120.07037 * 354.46297 * 10 9 7 12 12 C 1.38078 * 119.93127 * 179.97438 * 11 10 9 13 13 C 1.38321 * 120.06855 * 0.02562 * 12 11 10 14 14 C 1.38279 * 120.13896 * 359.97438 * 13 12 11 15 15 C 1.50700 * 119.96844 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.47156 * 89.99055 * 15 14 13 17 17 O 1.21272 * 120.00040 * 0.02562 * 16 15 14 18 18 N 1.34781 * 119.99732 * 179.72172 * 16 15 14 19 19 C 1.47067 * 136.05734 * 359.91483 * 18 16 15 20 20 C 1.53229 * 88.08214 * 207.19624 * 19 18 16 21 21 C 1.47064 * 136.05776 * 180.27259 * 18 16 15 22 22 C 1.38126 * 120.06629 * 0.26673 * 14 13 12 23 23 H 0.96996 * 119.99876 * 0.02562 * 1 2 3 24 24 H 1.08003 * 120.03432 * 0.02611 * 11 10 9 25 25 H 1.08001 * 119.96475 * 179.97438 * 12 11 10 26 26 H 1.08006 * 119.93337 * 180.02562 * 13 12 11 27 27 H 1.09003 * 109.46940 * 329.99663 * 15 14 13 28 28 H 1.08997 * 109.46994 * 209.99345 * 15 14 13 29 29 H 1.08997 * 113.46737 * 321.92964 * 19 18 16 30 30 H 1.09005 * 113.46509 * 92.37125 * 19 18 16 31 31 H 1.09002 * 114.33162 * 220.46626 * 20 19 18 32 32 H 1.09002 * 114.01955 * 87.71657 * 20 19 18 33 33 H 1.09002 * 113.47110 * 267.63403 * 21 18 16 34 34 H 1.09008 * 113.46384 * 38.07181 * 21 18 16 35 35 H 1.07999 * 120.03137 * 179.71337 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4002 5 1 1.4470 2.6526 0.7000 6 1 3.5472 1.4402 0.7000 7 6 2.0089 -1.2007 0.0005 8 1 1.4689 -2.1361 0.0005 9 8 3.3572 -1.2007 0.0000 10 6 3.9735 -2.4057 -0.1061 11 6 3.2234 -3.5746 -0.0920 12 6 3.8531 -4.7986 -0.2007 13 6 5.2295 -4.8615 -0.3228 14 6 5.9790 -3.6996 -0.3371 15 6 7.4783 -3.7725 -0.4710 16 6 7.8548 -3.7349 -1.9297 17 8 6.9909 -3.6562 -2.7771 18 7 9.1521 -3.7827 -2.2923 19 6 10.4440 -3.8689 -1.5949 20 6 11.0795 -3.1539 -2.7919 21 6 9.8989 -3.7651 -3.5591 22 6 5.3554 -2.4723 -0.2238 23 1 -0.4850 0.8400 -0.0004 24 1 2.1487 -3.5262 0.0029 25 1 3.2705 -5.7079 -0.1894 26 1 5.7198 -5.8201 -0.4081 27 1 7.8380 -4.7006 -0.0267 28 1 7.9306 -2.9244 0.0430 29 1 10.4800 -3.2866 -0.6742 30 1 10.7981 -4.8912 -1.4619 31 1 12.0536 -3.5463 -3.0840 32 1 11.0535 -2.0663 -2.7240 33 1 10.1063 -4.7594 -3.9546 34 1 9.4722 -3.0947 -4.3052 35 1 5.9418 -1.5654 -0.2304 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089640461.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:43:08 Heat of formation + Delta-G solvation = 4.647541 kcal Electronic energy + Delta-G solvation = -18662.534033 eV Core-core repulsion = 15627.966321 eV Total energy + Delta-G solvation = -3034.567712 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.40328 -39.15418 -37.87184 -36.45785 -32.41403 -32.15696 -30.10323 -29.30522 -27.02919 -26.04871 -25.09101 -22.54962 -21.66704 -20.61382 -19.03046 -17.66619 -17.09044 -17.06669 -16.48800 -15.56358 -15.21375 -14.98640 -14.37749 -13.80824 -13.73419 -13.45479 -13.24511 -12.96266 -12.88524 -12.48347 -12.39333 -12.12494 -11.85148 -11.61378 -11.27696 -11.03598 -10.79760 -10.71863 -10.71141 -10.11438 -9.72703 -9.33659 -8.83920 -8.81619 -8.09678 -7.30541 -6.35850 -4.02415 2.03523 2.33607 2.70017 2.82308 3.25666 3.30160 3.44151 4.03191 4.28849 4.35941 4.62841 4.72631 4.77810 4.90128 5.09111 5.11545 5.15159 5.16274 5.33773 5.36966 5.44294 5.59965 5.70437 5.74882 5.84892 5.89893 6.17063 6.30487 6.58161 6.84146 7.14920 7.26292 7.36688 7.61143 7.67921 7.86413 8.10002 8.24525 8.99814 9.62926 10.72103 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.026492 B = 0.004542 C = 0.004080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.680259 B = 6162.720930 C = 6861.376121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.388 4.388 8 H 0.106 0.894 9 O -0.220 6.220 10 C 0.160 3.840 11 C -0.217 4.217 12 C -0.076 4.076 13 C -0.188 4.188 14 C -0.036 4.036 15 C -0.085 4.085 16 C 0.541 3.459 17 O -0.517 6.517 18 N -0.658 5.658 19 C 0.099 3.901 20 C -0.157 4.157 21 C 0.102 3.898 22 C -0.174 4.174 23 H 0.279 0.721 24 H 0.133 0.867 25 H 0.111 0.889 26 H 0.104 0.896 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.000 -7.948 -1.653 23.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.464 4.464 8 H 0.123 0.877 9 O -0.125 6.125 10 C 0.109 3.891 11 C -0.236 4.236 12 C -0.094 4.094 13 C -0.207 4.207 14 C -0.037 4.037 15 C -0.125 4.125 16 C 0.331 3.669 17 O -0.391 6.391 18 N -0.396 5.396 19 C -0.024 4.024 20 C -0.195 4.195 21 C -0.021 4.021 22 C -0.194 4.194 23 H 0.089 0.911 24 H 0.151 0.849 25 H 0.129 0.871 26 H 0.122 0.878 27 H 0.116 0.884 28 H 0.116 0.884 29 H 0.097 0.903 30 H 0.102 0.898 31 H 0.107 0.893 32 H 0.112 0.888 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 21.127 -7.522 -2.019 22.517 hybrid contribution 0.121 0.543 -0.043 0.558 sum 21.248 -6.979 -2.062 22.460 Atomic orbital electron populations 1.69647 1.05535 1.28380 1.48459 1.24448 0.95011 0.98754 0.95773 0.86190 0.80291 0.81504 0.78959 1.19907 1.20808 1.18415 1.20771 0.76928 0.96627 1.52068 0.87651 1.83567 1.22573 1.25626 1.80734 1.18996 0.91471 0.85572 0.93081 1.21298 1.01119 0.91937 1.09250 1.20735 0.94055 0.96767 0.97852 1.20417 0.93978 0.96462 1.09825 1.18678 0.92189 0.93099 0.99743 1.20507 0.94957 1.04413 0.92624 1.20402 0.79409 0.75496 0.91549 1.90773 1.47179 1.48062 1.53079 1.49792 1.04331 1.75034 1.10488 1.22917 0.81254 1.00722 0.97528 1.23348 0.98005 1.01415 0.96695 1.22887 0.89097 1.00846 0.89299 1.19934 0.92044 0.96904 1.10479 0.91129 0.84943 0.87122 0.87756 0.88448 0.88402 0.90302 0.89803 0.89295 0.88753 0.90064 0.90522 0.86840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.18 13.96 55.48 0.77 -25.40 16 2 C 0.06 1.82 5.49 -17.52 -0.10 1.73 16 3 Si 0.90 22.40 28.62 -169.99 -4.86 17.54 16 4 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.26 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.39 -11.37 9.95 30.89 0.31 -11.07 16 8 H 0.11 3.14 5.44 -52.48 -0.29 2.86 16 9 O -0.22 -6.08 8.59 0.04 0.00 -6.08 16 10 C 0.16 3.95 6.65 -39.11 -0.26 3.69 16 11 C -0.22 -4.99 9.17 -39.40 -0.36 -5.35 16 12 C -0.08 -1.48 10.04 -39.61 -0.40 -1.88 16 13 C -0.19 -3.43 9.70 -39.54 -0.38 -3.81 16 14 C -0.04 -0.67 4.37 -104.65 -0.46 -1.13 16 15 C -0.09 -1.17 5.66 -29.03 -0.16 -1.34 16 16 C 0.54 8.44 8.07 -10.98 -0.09 8.35 16 17 O -0.52 -10.75 16.81 5.56 0.09 -10.65 16 18 N -0.66 -7.52 3.69 -185.45 -0.68 -8.20 16 19 C 0.10 0.65 8.40 -8.65 -0.07 0.58 16 20 C -0.16 -0.88 8.48 -26.36 -0.22 -1.11 16 21 C 0.10 0.89 8.61 -8.51 -0.07 0.82 16 22 C -0.17 -3.74 9.64 -39.39 -0.38 -4.12 16 23 H 0.28 7.63 8.31 -40.82 -0.34 7.29 16 24 H 0.13 3.15 5.64 -52.48 -0.30 2.86 16 25 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 26 H 0.10 1.61 8.06 -52.48 -0.42 1.19 16 27 H 0.10 1.06 8.09 -51.93 -0.42 0.64 16 28 H 0.10 1.15 8.08 -51.93 -0.42 0.73 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.76 8.14 -51.92 -0.42 0.34 16 35 H 0.11 2.29 8.06 -52.49 -0.42 1.87 16 LS Contribution 305.80 15.07 4.61 4.61 Total: -1.00 -34.99 305.80 -7.08 -42.07 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -4.36 Total: 0.75 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: -2.65 Total: -14.63 kcal Atomic # 7 Polarization: -33.69 SS G_CDS: 0.09 Total: -33.60 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: 0.09 Total: -16.73 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.86 Total: 17.54 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -34.99 -7.08 -42.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089640461.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.719 kcal (2) G-P(sol) polarization free energy of solvation -34.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds