Wall clock time and date at job start Mon Mar 30 2020 00:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50703 * 120.00014 * 2 1 4 4 N 1.46495 * 109.47317 * 125.00125 * 3 2 1 5 5 C 1.34775 * 120.00172 * 179.97438 * 4 3 2 6 6 O 1.21287 * 119.99798 * 0.02562 * 5 4 3 7 7 C 1.50705 * 120.00246 * 179.97438 * 5 4 3 8 8 C 1.50695 * 109.46992 * 180.02562 * 7 5 4 9 9 C 1.38299 * 119.93247 * 90.00201 * 8 7 5 10 10 C 1.38101 * 120.07425 * 179.97438 * 9 8 7 11 11 C 1.38886 * 119.92536 * 0.02562 * 10 9 8 12 12 O 1.35750 * 120.06440 * 180.02562 * 11 10 9 13 13 C 1.34828 * 117.00075 * 5.53777 * 12 11 10 14 14 H 1.07993 * 120.00518 * 354.94289 * 13 12 11 15 15 C 1.38663 * 119.99751 * 174.94575 * 13 12 11 16 16 N 1.31556 * 120.00220 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 119.99821 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47517 * 59.99414 * 17 15 13 19 19 H 1.48505 * 109.47332 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46989 * 299.99567 * 17 15 13 21 21 C 1.38874 * 119.86623 * 0.27854 * 11 10 9 22 22 C 1.38106 * 119.92542 * 359.44577 * 21 11 10 23 23 H 1.08002 * 119.99905 * 180.02562 * 1 2 3 24 24 H 1.07996 * 120.00120 * 359.97438 * 1 2 3 25 25 H 1.08001 * 120.00289 * 179.97438 * 2 1 3 26 26 H 1.08998 * 109.47278 * 4.99664 * 3 2 1 27 27 H 1.09005 * 109.46966 * 244.99864 * 3 2 1 28 28 H 0.97005 * 120.00223 * 0.02562 * 4 3 2 29 29 H 1.08998 * 109.46621 * 60.00483 * 7 5 4 30 30 H 1.08996 * 109.47266 * 300.00146 * 7 5 4 31 31 H 1.07999 * 119.96503 * 0.02562 * 9 8 7 32 32 H 1.07992 * 120.03608 * 180.02562 * 10 9 8 33 33 H 0.96996 * 120.00178 * 179.97438 * 16 15 13 34 34 H 1.07996 * 120.03745 * 179.72497 * 21 11 10 35 35 H 1.07997 * 119.96326 * 180.27708 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 3.7790 2.4086 1.3328 6 8 3.7151 3.3556 0.5776 7 6 4.7355 2.4365 2.4970 8 6 5.4891 3.7415 2.4968 9 6 4.9837 4.8303 3.1838 10 6 5.6721 6.0275 3.1861 11 6 6.8729 6.1375 2.4970 12 8 7.5521 7.3129 2.4977 13 6 7.0678 8.2993 3.2789 14 1 6.1337 8.1633 3.8036 15 6 7.7690 9.4885 3.4086 16 7 8.9071 9.6541 2.7698 17 14 7.0984 10.8548 4.4914 18 1 6.9669 10.3619 5.8860 19 1 8.0287 12.0120 4.4615 20 1 5.7665 11.2768 3.9880 21 6 7.3746 5.0444 1.8028 22 6 6.6843 3.8482 1.8092 23 1 -0.5400 -0.9353 0.0004 24 1 -0.5400 0.9353 0.0004 25 1 1.8500 -0.9353 0.0004 26 1 1.3586 2.1317 0.0895 27 1 2.6213 1.4026 -0.9314 28 1 3.0451 0.5745 1.7351 29 1 5.4402 1.6097 2.4080 30 1 4.1775 2.3397 3.4282 31 1 4.0501 4.7439 3.7198 32 1 5.2771 6.8771 3.7231 33 1 9.3974 10.4861 2.8602 34 1 8.3058 5.1282 1.2623 35 1 7.0761 2.9964 1.2733 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110596261.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:37 Heat of formation + Delta-G solvation = -22.350939 kcal Electronic energy + Delta-G solvation = -18158.542337 eV Core-core repulsion = 15122.803883 eV Total energy + Delta-G solvation = -3035.738454 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.76339 -38.74462 -36.59192 -35.76157 -32.97864 -32.38074 -31.22183 -30.08670 -27.35094 -25.69559 -24.77363 -21.91008 -21.07264 -20.66025 -19.75849 -17.92057 -17.07669 -16.81407 -16.36967 -15.58485 -14.99217 -14.54041 -14.30089 -14.20914 -13.75402 -13.55143 -13.37501 -13.23546 -12.85942 -12.63005 -12.30407 -11.78415 -11.51293 -11.44394 -11.20869 -10.78994 -10.70082 -10.59179 -10.39236 -10.16245 -9.58839 -9.27318 -9.08956 -8.76679 -8.08507 -7.10122 -6.39573 -3.98099 1.72285 2.31467 2.34563 2.81570 3.16767 3.17209 3.20489 3.40082 4.01503 4.45646 4.61103 4.72793 5.02586 5.16583 5.24170 5.32085 5.33436 5.39005 5.46827 5.61591 5.72415 5.79474 5.91391 6.14479 6.20259 6.27914 6.42633 6.48247 6.76793 6.97999 7.11262 7.30004 7.43345 7.48813 7.52217 7.90575 8.05792 8.36175 9.06032 9.77285 10.78605 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.041846 B = 0.003377 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.963275 B = 8289.210470 C = 8600.216108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.174 4.174 3 C 0.145 3.855 4 N -0.739 5.739 5 C 0.507 3.493 6 O -0.521 6.521 7 C -0.079 4.079 8 C -0.170 4.170 9 C -0.057 4.057 10 C -0.232 4.232 11 C 0.156 3.844 12 O -0.178 6.178 13 C -0.391 4.391 14 H 0.091 0.909 15 C 0.039 3.961 16 N -0.864 5.864 17 Si 0.941 3.059 18 H -0.270 1.270 19 H -0.278 1.278 20 H -0.270 1.270 21 C -0.192 4.192 22 C -0.060 4.060 23 H 0.102 0.898 24 H 0.100 0.900 25 H 0.114 0.886 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.399 0.601 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.103 0.897 32 H 0.126 0.874 33 H 0.270 0.730 34 H 0.116 0.884 35 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.414 -18.258 -0.577 22.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.192 4.192 3 C 0.022 3.978 4 N -0.393 5.393 5 C 0.294 3.706 6 O -0.395 6.395 7 C -0.119 4.119 8 C -0.172 4.172 9 C -0.075 4.075 10 C -0.252 4.252 11 C 0.103 3.897 12 O -0.082 6.082 13 C -0.467 4.467 14 H 0.109 0.891 15 C -0.165 4.165 16 N -0.499 5.499 17 Si 0.765 3.235 18 H -0.195 1.195 19 H -0.203 1.203 20 H -0.195 1.195 21 C -0.211 4.211 22 C -0.078 4.078 23 H 0.120 0.880 24 H 0.118 0.882 25 H 0.132 0.868 26 H 0.087 0.913 27 H 0.092 0.908 28 H 0.232 0.768 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.122 0.878 32 H 0.144 0.856 33 H 0.080 0.920 34 H 0.135 0.865 35 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -12.059 -17.255 -1.289 21.090 hybrid contribution -0.468 0.239 0.760 0.924 sum -12.527 -17.016 -0.529 21.136 Atomic orbital electron populations 1.23974 0.95829 1.02360 0.98596 1.23037 0.96230 0.98205 1.01713 1.20364 0.91973 0.95224 0.90277 1.46089 1.41759 1.20487 1.30965 1.21109 0.80771 0.81780 0.86935 1.90750 1.67110 1.34920 1.46694 1.20401 0.96955 0.98145 0.96400 1.18641 0.97654 0.94359 1.06510 1.20507 0.97465 0.92291 0.97239 1.21101 0.97820 0.98769 1.07487 1.19388 0.90673 0.86946 0.92710 1.83975 1.48358 1.17224 1.58626 1.21282 1.07131 0.92749 1.25586 0.89150 1.25282 0.95528 0.97949 0.97784 1.70031 1.13636 1.26249 1.40007 0.85786 0.78626 0.79396 0.79642 1.19534 1.20309 1.19521 1.20152 1.02460 0.91843 1.06646 1.20400 0.94129 0.96240 0.97029 0.87983 0.88160 0.86764 0.91262 0.90824 0.76758 0.88960 0.89008 0.87843 0.85603 0.92026 0.86550 0.87387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.04 14.32 29.02 0.42 -0.62 16 2 C -0.17 -1.18 9.63 -36.02 -0.35 -1.53 16 3 C 0.14 1.40 6.11 -5.19 -0.03 1.37 16 4 N -0.74 -7.38 5.55 -61.47 -0.34 -7.72 16 5 C 0.51 7.16 7.82 -10.98 -0.09 7.08 16 6 O -0.52 -10.08 16.03 5.55 0.09 -10.00 16 7 C -0.08 -1.01 5.83 -29.04 -0.17 -1.18 16 8 C -0.17 -3.05 4.38 -104.58 -0.46 -3.50 16 9 C -0.06 -1.10 9.69 -39.61 -0.38 -1.49 16 10 C -0.23 -5.33 9.17 -39.39 -0.36 -5.69 16 11 C 0.16 3.97 6.65 -39.11 -0.26 3.71 16 12 O -0.18 -5.28 9.76 0.05 0.00 -5.28 16 13 C -0.39 -11.26 9.49 30.89 0.29 -10.97 16 14 H 0.09 2.41 5.20 -52.49 -0.27 2.14 16 15 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 16 N -0.86 -25.90 13.67 55.48 0.76 -25.14 16 17 Si 0.94 20.99 29.55 -169.99 -5.02 15.97 16 18 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 19 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 20 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 21 C -0.19 -4.29 9.99 -39.39 -0.39 -4.68 16 22 C -0.06 -1.13 9.69 -39.61 -0.38 -1.52 16 23 H 0.10 0.47 8.06 -52.49 -0.42 0.05 16 24 H 0.10 0.62 7.84 -52.49 -0.41 0.21 16 25 H 0.11 0.62 8.06 -52.49 -0.42 0.20 16 26 H 0.07 0.75 7.79 -51.93 -0.40 0.34 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.40 2.67 8.46 -40.82 -0.35 2.33 16 29 H 0.09 0.93 8.08 -51.93 -0.42 0.51 16 30 H 0.09 0.95 8.08 -51.93 -0.42 0.53 16 31 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 32 H 0.13 2.87 5.64 -52.49 -0.30 2.57 16 33 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.12 2.50 8.06 -52.49 -0.42 2.08 16 35 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 LS Contribution 312.00 15.07 4.70 4.70 Total: -1.00 -34.71 312.00 -6.32 -41.02 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -4.24 Total: 4.48 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: -2.26 Total: -18.04 kcal Atomic # 7 Polarization: -33.28 SS G_CDS: 0.42 Total: -32.86 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: 0.09 Total: -15.27 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -34.71 -6.32 -41.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110596261.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.673 kcal (2) G-P(sol) polarization free energy of solvation -34.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds