Wall clock time and date at job start Sun Mar 29 2020 23:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31384 * 1 3 3 Si 1.86799 * 120.00199 * 2 1 4 4 H 1.48502 * 109.46942 * 240.00122 * 3 2 1 5 5 H 1.48503 * 109.46977 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47280 * 119.99711 * 3 2 1 7 7 C 1.39019 * 119.99832 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99995 * 180.02562 * 7 2 1 9 9 N 1.36910 * 120.00192 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00001 * 180.02562 * 9 7 2 11 11 O 1.21620 * 119.99918 * 359.97438 * 10 9 7 12 12 C 1.47429 * 119.99975 * 180.02562 * 10 9 7 13 13 C 1.39768 * 120.19632 * 359.97414 * 12 10 9 14 14 C 1.37770 * 119.90107 * 180.02562 * 13 12 10 15 15 C 1.38559 * 120.30889 * 359.97438 * 14 13 12 16 16 C 1.38078 * 120.39531 * 359.72819 * 15 14 13 17 17 C 1.38680 * 120.09314 * 0.55015 * 16 15 14 18 18 O 1.35659 * 120.15491 * 179.72210 * 17 16 15 19 19 C 1.42903 * 117.00014 * 5.78539 * 18 17 16 20 20 C 1.53781 * 113.61286 * 254.15784 * 19 18 17 21 21 C 1.53788 * 87.07670 * 220.01397 * 20 19 18 22 22 C 1.53780 * 87.08245 * 25.43368 * 21 20 19 23 23 H 0.96998 * 119.99848 * 0.02562 * 1 2 3 24 24 H 0.96997 * 120.00134 * 0.02562 * 9 7 2 25 25 H 1.08001 * 120.05051 * 0.04261 * 13 12 10 26 26 H 1.08003 * 119.84306 * 179.97438 * 14 13 12 27 27 H 1.07997 * 119.79997 * 180.02562 * 15 14 13 28 28 H 1.08004 * 119.95273 * 180.27465 * 16 15 14 29 29 H 1.08998 * 112.84635 * 25.45916 * 19 18 17 30 30 H 1.08999 * 113.61626 * 334.55965 * 20 19 18 31 31 H 1.08999 * 113.61449 * 105.47475 * 20 19 18 32 32 H 1.08992 * 113.61797 * 270.88465 * 21 20 19 33 33 H 1.09000 * 113.61041 * 139.97908 * 21 20 19 34 34 H 1.08997 * 113.61409 * 220.01483 * 22 21 20 35 35 H 1.08996 * 113.69131 * 89.12043 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2479 1.6177 0.0000 4 1 3.1016 1.6963 -1.2125 5 1 1.2829 2.7464 -0.0006 6 1 3.1016 1.6964 1.2125 7 6 2.0089 -1.2040 -0.0005 8 1 3.0889 -1.2040 -0.0001 9 7 1.3243 -2.3896 -0.0005 10 6 1.9982 -3.5568 -0.0005 11 8 3.2144 -3.5568 -0.0010 12 6 1.2611 -4.8336 -0.0011 13 6 -0.1366 -4.8384 -0.0011 14 6 -0.8193 -6.0351 -0.0011 15 6 -0.1268 -7.2352 -0.0016 16 6 1.2540 -7.2450 -0.0078 17 6 1.9579 -6.0502 -0.0021 18 8 3.3145 -6.0585 -0.0024 19 6 3.9555 -7.3285 -0.1373 20 6 4.5751 -7.8478 1.1709 21 6 5.7613 -8.3364 0.3229 22 6 5.3882 -7.2400 -0.6888 23 1 -0.4850 0.8400 -0.0004 24 1 0.3544 -2.3897 -0.0005 25 1 -0.6806 -3.9054 -0.0014 26 1 -1.8993 -6.0377 -0.0007 27 1 -0.6702 -8.1685 -0.0021 28 1 1.7865 -8.1847 -0.0127 29 1 3.3349 -8.0635 -0.6499 30 1 4.8373 -7.0571 1.8739 31 1 4.0068 -8.6551 1.6328 32 1 5.6349 -9.3479 -0.0630 33 1 6.7303 -8.1813 0.7973 34 1 5.4764 -7.5566 -1.7281 35 1 5.8721 -6.2827 -0.4954 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000118324921.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:37:59 Heat of formation + Delta-G solvation = -25.111533 kcal Electronic energy + Delta-G solvation = -19144.660759 eV Core-core repulsion = 16108.802597 eV Total energy + Delta-G solvation = -3035.858162 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.18531 -38.60665 -37.21683 -35.90600 -33.88013 -31.51645 -30.40197 -29.47756 -25.67121 -25.47066 -25.00284 -22.93498 -21.69449 -19.89233 -19.15761 -18.37853 -17.62152 -16.32864 -15.80258 -15.43447 -14.73387 -14.67245 -14.26330 -14.11335 -14.01180 -13.51211 -13.24573 -12.50441 -12.40914 -12.24467 -11.98885 -11.55158 -11.49229 -11.24989 -11.17452 -11.05607 -10.79652 -10.42675 -10.34573 -10.17990 -10.13276 -9.51159 -8.60111 -8.28233 -7.96056 -7.75676 -6.45292 -3.78214 1.41340 1.77866 3.22270 3.25837 3.30763 3.59943 3.77029 4.16834 4.50865 4.56822 4.61719 4.77788 4.82009 4.90715 5.12876 5.19312 5.28612 5.39707 5.52654 5.60282 5.70283 5.77772 5.82657 5.90924 5.96072 6.05721 6.11603 6.33411 6.34336 6.63956 6.70059 6.84019 7.11797 7.52748 7.88397 8.08908 8.63729 9.18087 9.55057 10.12513 10.72409 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.021541 B = 0.005624 C = 0.004546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.558035 B = 4977.764251 C = 6158.017382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.021 3.979 3 Si 0.934 3.066 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.291 4.291 8 H 0.105 0.895 9 N -0.553 5.553 10 C 0.475 3.525 11 O -0.576 6.576 12 C -0.133 4.133 13 C -0.066 4.066 14 C -0.166 4.166 15 C -0.081 4.081 16 C -0.224 4.224 17 C 0.168 3.832 18 O -0.257 6.257 19 C 0.045 3.955 20 C -0.155 4.155 21 C -0.140 4.140 22 C -0.129 4.129 23 H 0.274 0.726 24 H 0.392 0.608 25 H 0.133 0.867 26 H 0.122 0.878 27 H 0.119 0.881 28 H 0.126 0.874 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.497 -15.528 0.000 15.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.181 4.181 3 Si 0.760 3.240 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.420 4.420 8 H 0.123 0.877 9 N -0.189 5.189 10 C 0.263 3.737 11 O -0.461 6.461 12 C -0.137 4.137 13 C -0.085 4.085 14 C -0.184 4.184 15 C -0.099 4.099 16 C -0.243 4.243 17 C 0.120 3.880 18 O -0.168 6.168 19 C -0.012 4.012 20 C -0.192 4.192 21 C -0.178 4.178 22 C -0.167 4.167 23 H 0.084 0.916 24 H 0.226 0.774 25 H 0.151 0.849 26 H 0.140 0.860 27 H 0.137 0.863 28 H 0.143 0.857 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.340 -15.148 0.016 15.328 hybrid contribution -0.450 0.575 -0.007 0.730 sum 1.891 -14.573 0.009 14.695 Atomic orbital electron populations 1.69590 1.06041 1.28520 1.49508 1.25321 0.95670 0.99870 0.97257 0.85868 0.78771 0.80154 0.79174 1.19795 1.20888 1.19793 1.19744 0.93595 0.82213 1.46495 0.87680 1.41862 1.09288 1.04592 1.63120 1.17530 0.87564 0.82965 0.85659 1.90643 1.12843 1.86751 1.55892 1.19876 0.93051 0.93070 1.07737 1.21310 0.92469 0.98757 0.95977 1.20897 0.99750 0.92178 1.05594 1.20889 0.93298 0.97869 0.97894 1.21103 0.95312 0.96640 1.11240 1.19044 0.83127 0.92680 0.93134 1.86556 1.15320 1.29420 1.85514 1.24195 0.93457 0.85796 0.97777 1.23489 0.97352 1.01024 0.97380 1.22648 0.98817 0.98345 0.97975 1.23147 0.94170 1.00298 0.99071 0.91619 0.77355 0.84930 0.86009 0.86272 0.85655 0.88783 0.88779 0.91286 0.90101 0.90606 0.90911 0.88393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.45 13.05 55.50 0.72 -23.73 16 2 C 0.02 0.57 5.50 -17.45 -0.10 0.47 16 3 Si 0.93 21.17 29.55 -169.99 -5.02 16.15 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.29 -8.32 9.68 -14.99 -0.15 -8.46 16 8 H 0.11 3.13 7.15 -52.49 -0.38 2.75 16 9 N -0.55 -14.81 5.23 -11.95 -0.06 -14.87 16 10 C 0.48 12.46 7.71 -12.52 -0.10 12.37 16 11 O -0.58 -16.90 14.73 -16.62 -0.24 -17.14 16 12 C -0.13 -2.87 5.89 -104.85 -0.62 -3.49 16 13 C -0.07 -1.19 9.54 -39.18 -0.37 -1.56 16 14 C -0.17 -2.46 10.02 -39.63 -0.40 -2.85 16 15 C -0.08 -1.11 10.03 -39.52 -0.40 -1.50 16 16 C -0.22 -3.41 9.01 -39.48 -0.36 -3.77 16 17 C 0.17 3.27 6.69 -38.68 -0.26 3.01 16 18 O -0.26 -5.14 8.22 -40.56 -0.33 -5.47 16 19 C 0.04 0.64 3.68 -25.92 -0.10 0.54 16 20 C -0.15 -1.88 7.91 -25.92 -0.21 -2.08 16 21 C -0.14 -1.41 8.08 -25.92 -0.21 -1.62 16 22 C -0.13 -1.64 7.91 -25.92 -0.21 -1.85 16 23 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 24 H 0.39 9.91 5.92 -40.82 -0.24 9.66 16 25 H 0.13 2.35 6.40 -52.49 -0.34 2.01 16 26 H 0.12 1.45 8.06 -52.48 -0.42 1.03 16 27 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 28 H 0.13 1.55 5.92 -52.48 -0.31 1.24 16 29 H 0.09 1.15 5.97 -51.93 -0.31 0.84 16 30 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 298.40 15.07 4.50 4.50 Total: -1.00 -32.58 298.40 -7.99 -40.57 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -4.09 Total: 10.79 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: -3.45 Total: -10.79 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.66 Total: -38.60 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: -0.58 Total: -22.61 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -32.58 -7.99 -40.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118324921.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.454 kcal (2) G-P(sol) polarization free energy of solvation -32.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds