Wall clock time and date at job start Sun Mar 29 2020 23:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31384 * 1 3 3 Si 1.86799 * 120.00199 * 2 1 4 4 H 1.48502 * 109.46942 * 240.00122 * 3 2 1 5 5 H 1.48503 * 109.46977 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47280 * 119.99711 * 3 2 1 7 7 C 1.39019 * 119.99832 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99995 * 180.02562 * 7 2 1 9 9 N 1.36910 * 120.00192 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00001 * 180.02562 * 9 7 2 11 11 O 1.21620 * 119.99918 * 359.97438 * 10 9 7 12 12 C 1.47429 * 119.99975 * 180.02562 * 10 9 7 13 13 C 1.39768 * 120.19632 * 359.97414 * 12 10 9 14 14 C 1.37770 * 119.90107 * 180.02562 * 13 12 10 15 15 C 1.38559 * 120.30889 * 359.97438 * 14 13 12 16 16 C 1.38078 * 120.39531 * 359.72819 * 15 14 13 17 17 C 1.38680 * 120.09314 * 0.55015 * 16 15 14 18 18 O 1.35659 * 120.15491 * 179.72210 * 17 16 15 19 19 C 1.42903 * 117.00014 * 5.78539 * 18 17 16 20 20 C 1.53781 * 113.61286 * 254.15784 * 19 18 17 21 21 C 1.53788 * 87.07670 * 220.01397 * 20 19 18 22 22 C 1.53780 * 87.08245 * 25.43368 * 21 20 19 23 23 H 0.96998 * 119.99848 * 0.02562 * 1 2 3 24 24 H 0.96997 * 120.00134 * 0.02562 * 9 7 2 25 25 H 1.08001 * 120.05051 * 0.04261 * 13 12 10 26 26 H 1.08003 * 119.84306 * 179.97438 * 14 13 12 27 27 H 1.07997 * 119.79997 * 180.02562 * 15 14 13 28 28 H 1.08004 * 119.95273 * 180.27465 * 16 15 14 29 29 H 1.08998 * 112.84635 * 25.45916 * 19 18 17 30 30 H 1.08999 * 113.61626 * 334.55965 * 20 19 18 31 31 H 1.08999 * 113.61449 * 105.47475 * 20 19 18 32 32 H 1.08992 * 113.61797 * 270.88465 * 21 20 19 33 33 H 1.09000 * 113.61041 * 139.97908 * 21 20 19 34 34 H 1.08997 * 113.61409 * 220.01483 * 22 21 20 35 35 H 1.08996 * 113.69131 * 89.12043 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2479 1.6177 0.0000 4 1 3.1016 1.6963 -1.2125 5 1 1.2829 2.7464 -0.0006 6 1 3.1016 1.6964 1.2125 7 6 2.0089 -1.2040 -0.0005 8 1 3.0889 -1.2040 -0.0001 9 7 1.3243 -2.3896 -0.0005 10 6 1.9982 -3.5568 -0.0005 11 8 3.2144 -3.5568 -0.0010 12 6 1.2611 -4.8336 -0.0011 13 6 -0.1366 -4.8384 -0.0011 14 6 -0.8193 -6.0351 -0.0011 15 6 -0.1268 -7.2352 -0.0016 16 6 1.2540 -7.2450 -0.0078 17 6 1.9579 -6.0502 -0.0021 18 8 3.3145 -6.0585 -0.0024 19 6 3.9555 -7.3285 -0.1373 20 6 4.5751 -7.8478 1.1709 21 6 5.7613 -8.3364 0.3229 22 6 5.3882 -7.2400 -0.6888 23 1 -0.4850 0.8400 -0.0004 24 1 0.3544 -2.3897 -0.0005 25 1 -0.6806 -3.9054 -0.0014 26 1 -1.8993 -6.0377 -0.0007 27 1 -0.6702 -8.1685 -0.0021 28 1 1.7865 -8.1847 -0.0127 29 1 3.3349 -8.0635 -0.6499 30 1 4.8373 -7.0571 1.8739 31 1 4.0068 -8.6551 1.6328 32 1 5.6349 -9.3479 -0.0630 33 1 6.7303 -8.1813 0.7973 34 1 5.4764 -7.5566 -1.7281 35 1 5.8721 -6.2827 -0.4954 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000118324921.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:37:59 Heat of formation + Delta-G solvation = -45.543690 kcal Electronic energy + Delta-G solvation = -19145.546764 eV Core-core repulsion = 16108.802597 eV Total energy + Delta-G solvation = -3036.744167 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.51163 -40.10627 -38.81885 -37.14363 -35.97574 -33.47391 -31.95306 -30.78918 -27.25830 -26.65356 -26.25590 -24.47031 -22.95060 -21.44030 -20.38333 -20.23579 -19.17429 -17.99414 -17.15021 -16.64709 -16.45584 -15.98802 -15.81857 -15.74693 -15.28497 -15.13367 -14.88125 -14.24542 -13.54542 -13.49884 -13.43112 -13.20141 -12.94009 -12.64796 -12.49824 -12.35019 -12.21403 -12.12727 -11.88670 -11.56215 -11.33039 -11.16010 -10.33960 -10.08942 -9.93598 -9.10340 -8.52529 -5.97478 0.03161 0.48770 1.38772 1.40994 1.51064 2.14736 2.27351 2.39955 2.87070 3.16972 3.32641 3.56542 3.61255 3.78556 3.85405 3.94350 4.02478 4.22506 4.27673 4.51057 4.56801 4.68659 4.75598 4.78770 4.92930 4.96855 5.01596 5.11836 5.28562 5.34688 5.41154 5.43963 5.54243 5.89967 5.95136 6.54300 6.67848 7.06873 7.49135 8.08233 8.65390 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.021541 B = 0.005624 C = 0.004546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.558035 B = 4977.764251 C = 6158.017382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.012 4.012 3 Si 0.999 3.001 4 H -0.271 1.271 5 H -0.264 1.264 6 H -0.271 1.271 7 C -0.336 4.336 8 H 0.078 0.922 9 N -0.563 5.563 10 C 0.471 3.529 11 O -0.621 6.621 12 C -0.185 4.185 13 C -0.070 4.070 14 C -0.160 4.160 15 C -0.054 4.054 16 C -0.217 4.217 17 C 0.153 3.847 18 O -0.301 6.301 19 C 0.027 3.973 20 C -0.155 4.155 21 C -0.118 4.118 22 C -0.140 4.140 23 H 0.281 0.719 24 H 0.396 0.604 25 H 0.125 0.875 26 H 0.160 0.840 27 H 0.173 0.827 28 H 0.161 0.839 29 H 0.122 0.878 30 H 0.065 0.935 31 H 0.094 0.906 32 H 0.114 0.886 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.053 -18.574 -0.095 18.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.212 4.212 3 Si 0.822 3.178 4 H -0.196 1.196 5 H -0.188 1.188 6 H -0.196 1.196 7 C -0.466 4.466 8 H 0.096 0.904 9 N -0.199 5.199 10 C 0.260 3.740 11 O -0.509 6.509 12 C -0.189 4.189 13 C -0.089 4.089 14 C -0.178 4.178 15 C -0.072 4.072 16 C -0.235 4.235 17 C 0.105 3.895 18 O -0.214 6.214 19 C -0.029 4.029 20 C -0.192 4.192 21 C -0.155 4.155 22 C -0.178 4.178 23 H 0.091 0.909 24 H 0.231 0.769 25 H 0.143 0.857 26 H 0.178 0.822 27 H 0.190 0.810 28 H 0.179 0.821 29 H 0.140 0.860 30 H 0.084 0.916 31 H 0.113 0.887 32 H 0.132 0.868 33 H 0.101 0.899 34 H 0.107 0.893 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.864 -18.215 -0.078 18.236 hybrid contribution -0.044 1.307 0.013 1.308 sum 0.820 -16.908 -0.065 16.928 Atomic orbital electron populations 1.69649 1.06935 1.29745 1.49252 1.26144 0.96653 1.02520 0.95867 0.84914 0.77789 0.76127 0.79017 1.19622 1.18843 1.19641 1.19693 0.92844 0.83970 1.50051 0.90355 1.41857 1.09340 1.04573 1.64174 1.18425 0.87462 0.84509 0.83563 1.90578 1.14990 1.87841 1.57467 1.19678 0.94516 0.91534 1.13154 1.21366 0.91103 1.00338 0.96090 1.21330 1.01611 0.91048 1.03823 1.21540 0.92728 0.99447 0.93454 1.21503 0.96199 0.96156 1.09670 1.19363 0.83393 0.93420 0.93334 1.86513 1.16106 1.33022 1.85723 1.24740 0.93886 0.84598 0.99643 1.23451 0.98542 1.00856 0.96366 1.22644 0.98262 0.98736 0.95864 1.23202 0.93587 1.00047 1.00932 0.90911 0.76894 0.85744 0.82239 0.80985 0.82126 0.86015 0.91612 0.88747 0.86808 0.89898 0.89349 0.91747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.05 13.05 21.68 0.28 -50.76 16 2 C -0.01 -0.64 5.50 84.95 0.47 -0.18 16 3 Si 1.00 44.43 29.55 68.60 2.03 46.46 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 7 C -0.34 -20.50 9.68 84.09 0.81 -19.69 16 8 H 0.08 5.07 7.15 -2.91 -0.02 5.05 16 9 N -0.56 -32.31 5.23 -309.98 -1.62 -33.93 16 10 C 0.47 26.58 7.71 86.66 0.67 27.24 16 11 O -0.62 -39.53 14.73 16.83 0.25 -39.28 16 12 C -0.18 -8.29 5.89 -20.01 -0.12 -8.40 16 13 C -0.07 -2.52 9.54 22.53 0.21 -2.31 16 14 C -0.16 -4.16 10.02 22.24 0.22 -3.94 16 15 C -0.05 -1.18 10.03 22.31 0.22 -0.96 16 16 C -0.22 -5.83 9.01 22.34 0.20 -5.63 16 17 C 0.15 5.95 6.69 22.85 0.15 6.11 16 18 O -0.30 -12.51 8.22 -68.82 -0.57 -13.07 16 19 C 0.03 0.75 3.68 31.12 0.11 0.86 16 20 C -0.15 -3.55 7.91 31.12 0.25 -3.30 16 21 C -0.12 -2.09 8.08 31.12 0.25 -1.84 16 22 C -0.14 -3.54 7.91 31.12 0.25 -3.29 16 23 H 0.28 14.51 8.31 -92.71 -0.77 13.74 16 24 H 0.40 21.34 5.92 -92.71 -0.55 20.79 16 25 H 0.12 4.57 6.40 -2.91 -0.02 4.55 16 26 H 0.16 2.97 8.06 -2.91 -0.02 2.95 16 27 H 0.17 2.13 8.06 -2.91 -0.02 2.11 16 28 H 0.16 3.11 5.92 -2.91 -0.02 3.10 16 29 H 0.12 2.58 5.97 -2.39 -0.01 2.56 16 30 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -78.26 298.40 4.64 -73.61 By element: Atomic # 1 Polarization: 31.74 SS G_CDS: 0.57 Total: 32.31 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: 3.71 Total: -15.33 kcal Atomic # 7 Polarization: -83.36 SS G_CDS: -1.34 Total: -84.70 kcal Atomic # 8 Polarization: -52.03 SS G_CDS: -0.32 Total: -52.35 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -78.26 4.64 -73.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118324921.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.068 kcal (2) G-P(sol) polarization free energy of solvation -78.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds