Wall clock time and date at job start Sun Mar 29 2020 23:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99995 * 2 1 4 4 H 1.48502 * 109.47105 * 239.99735 * 3 2 1 5 5 H 1.48492 * 109.47221 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46839 * 120.00101 * 3 2 1 7 7 C 1.37881 * 119.99872 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00158 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99883 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.47159 * 300.00222 * 9 7 2 11 11 O 1.42897 * 109.47190 * 60.00063 * 9 7 2 12 12 C 1.52993 * 109.46687 * 179.97438 * 9 7 2 13 13 S 1.81405 * 109.46906 * 179.97438 * 12 9 7 14 14 C 1.81399 * 103.00135 * 179.97438 * 13 12 9 15 15 C 1.53000 * 109.47045 * 180.02562 * 14 13 12 16 16 N 1.46906 * 109.47072 * 180.02562 * 15 14 13 17 17 C 1.47020 * 110.99867 * 293.63551 * 16 15 14 18 18 C 1.53097 * 109.25663 * 177.60414 * 17 16 15 19 19 O 1.43021 * 109.25605 * 56.85187 * 18 17 16 20 20 C 1.43021 * 113.73613 * 301.32802 * 19 18 17 21 21 C 1.47009 * 111.00252 * 170.00094 * 16 15 14 22 22 H 0.97002 * 119.99920 * 359.97438 * 1 2 3 23 23 H 0.96709 * 113.99958 * 59.99516 * 11 9 7 24 24 H 1.09004 * 109.47415 * 60.00342 * 12 9 7 25 25 H 1.09000 * 109.47611 * 300.00079 * 12 9 7 26 26 H 1.09002 * 109.46727 * 60.00568 * 14 13 12 27 27 H 1.08996 * 109.47221 * 300.00332 * 14 13 12 28 28 H 1.08993 * 109.47007 * 60.00402 * 15 14 13 29 29 H 1.08996 * 109.47340 * 300.00208 * 15 14 13 30 30 H 1.08998 * 109.50492 * 297.54142 * 17 16 15 31 31 H 1.09007 * 109.50106 * 57.67293 * 17 16 15 32 32 H 1.08995 * 109.50808 * 296.91455 * 18 17 16 33 33 H 1.08995 * 109.54142 * 176.80219 * 18 17 16 34 34 H 1.08995 * 109.50535 * 298.73468 * 20 19 18 35 35 H 1.09001 * 109.53535 * 178.62697 * 20 19 18 36 36 H 1.08999 * 109.50465 * 302.33238 * 21 16 15 37 37 H 1.08998 * 109.50618 * 62.41050 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8903 11 8 0.4299 -2.5752 -1.1665 12 6 2.2452 -3.6621 0.0005 13 16 1.3382 -5.2331 0.0013 14 6 2.6648 -6.4702 0.0004 15 6 2.0540 -7.8730 0.0003 16 7 3.1284 -8.8749 0.0002 17 6 3.8889 -8.8317 -1.2572 18 6 5.0324 -9.8476 -1.1909 19 8 4.4946 -11.1465 -0.9277 20 6 3.7482 -11.2247 0.2897 21 6 2.5919 -10.2228 0.2384 22 1 -0.4850 0.8401 0.0004 23 1 0.9224 -2.5300 -1.9976 24 1 2.8719 -3.6044 0.8906 25 1 2.8719 -3.6044 -0.8894 26 1 3.2816 -6.3422 0.8900 27 1 3.2804 -6.3423 -0.8899 28 1 1.4376 -8.0007 -0.8894 29 1 1.4382 -8.0012 0.8905 30 1 3.2302 -9.0789 -2.0897 31 1 4.2984 -7.8317 -1.4006 32 1 5.7202 -9.5698 -0.3923 33 1 5.5647 -9.8600 -2.1419 34 1 4.3987 -10.9870 1.1313 35 1 3.3513 -12.2328 0.4098 36 1 2.0544 -10.2382 1.1866 37 1 1.9118 -10.4919 -0.5698 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330732649.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:53:12 Heat of formation + Delta-G solvation = -96.271096 kcal Electronic energy + Delta-G solvation = -17300.874624 eV Core-core repulsion = 14397.374704 eV Total energy + Delta-G solvation = -2903.499921 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.79669 -36.34887 -35.85466 -32.18126 -31.65703 -31.04572 -29.68593 -26.85484 -25.34765 -24.31553 -22.46105 -20.90669 -20.52993 -17.18160 -16.97845 -16.43789 -15.69473 -15.56612 -15.32387 -14.77317 -14.67116 -14.44223 -14.37877 -14.00721 -13.79044 -13.13852 -12.71772 -12.43663 -11.95740 -11.83182 -11.67148 -11.41061 -11.22206 -11.07139 -10.90767 -10.85076 -10.70118 -10.11023 -9.94559 -9.54503 -9.07645 -8.66143 -8.63320 -8.26639 -7.09885 -6.07241 -4.27739 2.09157 3.22070 3.25330 3.31147 3.33012 3.52797 3.68879 4.34212 4.56037 4.67575 4.70627 4.86516 4.92667 5.04797 5.12197 5.19627 5.24536 5.33846 5.46699 5.51471 5.58721 5.64518 5.76051 5.83674 5.89130 6.00631 6.29986 6.64521 6.66782 6.68662 6.84297 7.60290 7.75043 8.04517 8.73729 9.32313 9.49948 10.96647 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.051714 B = 0.003246 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.310927 B = 8623.652847 C = 8913.533506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.081 3.919 3 Si 0.894 3.106 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.573 4.573 8 H 0.057 0.943 9 C 0.246 3.754 10 H 0.065 0.935 11 O -0.555 6.555 12 C -0.094 4.094 13 S -0.258 6.258 14 C -0.095 4.095 15 C 0.076 3.924 16 N -0.536 5.536 17 C 0.013 3.987 18 C 0.064 3.936 19 O -0.388 6.388 20 C 0.064 3.936 21 C 0.018 3.982 22 H 0.263 0.737 23 H 0.345 0.655 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.082 0.918 27 H 0.073 0.927 28 H 0.045 0.955 29 H 0.085 0.915 30 H 0.045 0.955 31 H 0.089 0.911 32 H 0.060 0.940 33 H 0.098 0.902 34 H 0.060 0.940 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.912 -18.965 -0.697 20.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.126 4.126 3 Si 0.721 3.279 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.613 4.613 8 H 0.075 0.925 9 C 0.187 3.813 10 H 0.082 0.918 11 O -0.357 6.357 12 C -0.243 4.243 13 S -0.032 6.032 14 C -0.243 4.243 15 C -0.053 4.053 16 N -0.262 5.262 17 C -0.116 4.116 18 C -0.013 4.013 19 O -0.306 6.306 20 C -0.013 4.013 21 C -0.111 4.111 22 H 0.073 0.927 23 H 0.189 0.811 24 H 0.093 0.907 25 H 0.086 0.914 26 H 0.100 0.900 27 H 0.091 0.909 28 H 0.063 0.937 29 H 0.103 0.897 30 H 0.063 0.937 31 H 0.107 0.893 32 H 0.078 0.922 33 H 0.116 0.884 34 H 0.078 0.922 35 H 0.116 0.884 36 H 0.106 0.894 37 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 6.508 -19.146 0.033 20.222 hybrid contribution 1.738 1.340 -0.803 2.337 sum 8.246 -17.805 -0.770 19.637 Atomic orbital electron populations 1.70076 1.05962 1.26809 1.46219 1.25042 0.94757 0.99189 0.93648 0.86651 0.79658 0.82831 0.78742 1.20079 1.21069 1.20064 1.21506 0.93112 0.90849 1.55806 0.92495 1.19150 0.87517 0.87673 0.86946 0.91752 1.86610 1.37925 1.96093 1.15115 1.24576 1.02423 0.93713 1.03579 1.87055 1.15713 1.02380 1.98015 1.23305 1.00348 0.96023 1.04671 1.21777 0.91993 0.89276 1.02207 1.62226 1.25413 1.04430 1.34157 1.22868 0.96716 1.01066 0.90913 1.22675 0.94582 0.82210 1.01819 1.87978 1.70531 1.30599 1.41516 1.22663 0.92380 0.99007 0.87234 1.22783 0.97243 0.88915 1.02147 0.92711 0.81128 0.90725 0.91358 0.89954 0.90860 0.93666 0.89696 0.93705 0.89254 0.92204 0.88415 0.92206 0.88443 0.89407 0.93802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.17 12.84 55.43 0.71 -24.46 16 2 C 0.08 2.24 5.40 -17.82 -0.10 2.14 16 3 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.57 -15.51 8.76 -34.44 -0.30 -15.81 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.25 6.25 2.88 -27.88 -0.08 6.17 16 10 H 0.06 1.82 8.14 -51.93 -0.42 1.40 16 11 O -0.56 -14.42 12.33 -35.23 -0.43 -14.85 16 12 C -0.09 -1.93 5.57 37.15 0.21 -1.72 16 13 S -0.26 -4.76 21.38 -107.50 -2.30 -7.06 16 14 C -0.09 -1.32 5.88 37.16 0.22 -1.10 16 15 C 0.08 0.92 4.96 -3.82 -0.02 0.91 16 16 N -0.54 -5.85 4.73 -234.31 -1.11 -6.96 16 17 C 0.01 0.13 5.44 -3.71 -0.02 0.11 16 18 C 0.06 0.58 7.01 37.21 0.26 0.84 16 19 O -0.39 -4.08 10.83 -35.23 -0.38 -4.46 16 20 C 0.06 0.55 7.01 37.20 0.26 0.81 16 21 C 0.02 0.16 5.64 -3.72 -0.02 0.14 16 22 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 23 H 0.35 7.95 9.04 45.56 0.41 8.37 16 24 H 0.07 1.47 8.14 -51.92 -0.42 1.05 16 25 H 0.07 1.33 8.14 -51.92 -0.42 0.90 16 26 H 0.08 1.15 8.14 -51.92 -0.42 0.73 16 27 H 0.07 0.98 6.52 -51.93 -0.34 0.64 16 28 H 0.05 0.58 8.12 -51.93 -0.42 0.16 16 29 H 0.08 1.04 8.04 -51.93 -0.42 0.62 16 30 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.09 0.88 6.38 -51.93 -0.33 0.55 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.09 0.72 8.09 -51.93 -0.42 0.30 16 37 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 315.16 15.07 4.75 4.75 Total: -1.00 -30.62 315.16 -8.66 -39.28 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -5.29 Total: 5.46 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: 0.41 Total: -7.53 kcal Atomic # 7 Polarization: -31.02 SS G_CDS: -0.40 Total: -31.42 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: -0.82 Total: -19.32 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: -4.76 SS G_CDS: -2.30 Total: -7.06 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.62 -8.66 -39.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330732649.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.994 kcal (2) G-P(sol) polarization free energy of solvation -30.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds