Wall clock time and date at job start Mon Mar 30 2020 00:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47465 * 2 1 4 4 H 1.09000 * 109.47293 * 305.00593 * 3 2 1 5 5 C 1.53002 * 109.47666 * 185.00338 * 3 2 1 6 6 N 1.46508 * 109.46736 * 65.00397 * 3 2 1 7 7 S 1.65601 * 119.99671 * 214.72505 * 6 3 2 8 8 O 1.42102 * 104.27493 * 181.34760 * 7 6 3 9 9 O 1.42100 * 104.27930 * 309.20252 * 7 6 3 10 10 C 1.81390 * 104.44970 * 65.27545 * 7 6 3 11 11 C 1.53003 * 109.47317 * 173.74433 * 10 7 6 12 12 C 1.50701 * 115.54954 * 65.19270 * 11 10 7 13 13 H 1.07999 * 120.00024 * 264.78596 * 12 11 10 14 14 C 1.37872 * 120.00168 * 84.78326 * 12 11 10 15 15 N 1.31526 * 119.99935 * 352.24178 * 14 12 11 16 16 Si 1.86796 * 120.00409 * 172.23546 * 14 12 11 17 17 H 1.48504 * 109.47347 * 90.00069 * 16 14 12 18 18 H 1.48494 * 109.47381 * 210.00374 * 16 14 12 19 19 H 1.48504 * 109.46968 * 330.00496 * 16 14 12 20 20 C 1.53004 * 117.50030 * 279.52766 * 11 10 7 21 21 C 1.52997 * 117.50217 * 210.86405 * 11 10 7 22 22 H 1.08995 * 109.47323 * 59.99116 * 1 2 3 23 23 H 1.08996 * 109.47485 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.46592 * 299.99587 * 1 2 3 25 25 H 1.09006 * 109.46592 * 240.00413 * 2 1 3 26 26 H 1.08995 * 109.47323 * 120.00884 * 2 1 3 27 27 H 1.09000 * 109.46973 * 300.00451 * 5 3 2 28 28 H 1.08994 * 109.46813 * 59.99647 * 5 3 2 29 29 H 1.08995 * 109.47141 * 180.02562 * 5 3 2 30 30 H 0.96995 * 119.99826 * 35.00124 * 6 3 2 31 31 H 1.08999 * 109.47730 * 293.74131 * 10 7 6 32 32 H 1.09003 * 109.47196 * 53.74897 * 10 7 6 33 33 H 0.96999 * 119.99438 * 185.02871 * 15 14 12 34 34 H 1.08994 * 117.49784 * 359.97438 * 20 11 10 35 35 H 1.08993 * 117.49954 * 145.01551 * 20 11 10 36 36 H 1.09003 * 117.49936 * 214.97517 * 21 11 10 37 37 H 1.08999 * 117.49767 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5649 1.4443 -0.1258 6 7 1.6525 2.0974 1.2519 7 16 1.2625 3.7068 1.2582 8 8 0.9777 3.9930 2.6206 9 8 2.3486 4.3332 0.5895 10 6 -0.2465 3.8106 0.2570 11 6 -0.7993 5.2362 0.3140 12 6 0.0723 6.2967 -0.3079 13 1 0.7511 6.8675 0.3084 14 6 0.0033 6.5381 -1.6635 15 7 -0.7060 5.7457 -2.4374 16 14 0.9170 7.9908 -2.4013 17 1 2.2835 7.5663 -2.7982 18 1 0.1844 8.4813 -3.5962 19 1 1.0095 9.0797 -1.3958 20 6 -1.6182 5.6277 1.5458 21 6 -2.3150 5.4113 0.2000 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.8932 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 3.9995 0.9052 0.7159 28 1 3.8531 0.9570 -1.0571 29 1 3.9282 2.4719 -0.1253 30 1 1.6283 1.5892 2.0778 31 1 -0.0156 3.5517 -0.7763 32 1 -0.9905 3.1166 0.6480 33 1 -0.6962 5.8713 -3.3991 34 1 -1.7634 4.8695 2.3153 35 1 -1.5267 6.6522 1.9061 36 1 -2.6817 6.2937 -0.3243 37 1 -2.9183 4.5109 0.0840 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331787664.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:46 Heat of formation + Delta-G solvation = -67.699960 kcal Electronic energy + Delta-G solvation = -19021.279066 eV Core-core repulsion = 16119.018083 eV Total energy + Delta-G solvation = -2902.260983 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -37.21047 -36.73833 -36.11920 -35.01046 -32.03344 -31.51858 -29.28214 -28.13555 -25.44575 -23.61883 -21.20399 -20.97416 -19.73991 -18.66998 -16.96009 -16.39100 -15.92680 -15.05943 -14.73749 -14.49912 -14.10355 -13.86613 -13.64639 -13.32572 -13.06469 -12.46425 -12.00130 -11.83119 -11.73747 -11.40641 -11.31485 -11.22961 -11.09940 -11.00475 -10.93586 -10.83225 -10.58245 -10.49516 -10.41350 -10.08669 -9.72474 -9.16821 -8.94305 -8.55315 -8.07651 -6.13390 -4.23511 1.13625 3.31211 3.36751 3.41982 3.52016 4.37941 4.57413 4.77684 4.98387 5.11665 5.13694 5.17716 5.22758 5.41946 5.50711 5.70734 5.72224 5.80913 5.96024 5.97271 6.00134 6.05431 6.25130 6.29903 6.37224 6.48623 6.49251 6.62940 6.73200 6.99387 7.24523 7.37580 7.40037 7.81198 8.21610 8.81806 9.47449 10.94233 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.020439 B = 0.008068 C = 0.007455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.631790 B = 3469.515349 C = 3755.177176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.127 4.127 3 C 0.149 3.851 4 H 0.086 0.914 5 C -0.171 4.171 6 N -1.127 6.127 7 S 2.606 3.394 8 O -0.978 6.978 9 O -0.950 6.950 10 C -0.554 4.554 11 C 0.044 3.956 12 C -0.515 4.515 13 H 0.068 0.932 14 C 0.082 3.918 15 N -0.875 5.875 16 Si 0.891 3.109 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.270 1.270 20 C -0.209 4.209 21 C -0.142 4.142 22 H 0.059 0.941 23 H 0.052 0.948 24 H 0.058 0.942 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.407 0.593 31 H 0.132 0.868 32 H 0.098 0.902 33 H 0.263 0.737 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.098 -11.378 3.006 11.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.166 4.166 3 C 0.041 3.959 4 H 0.104 0.896 5 C -0.230 4.230 6 N -0.883 5.883 7 S 2.703 3.297 8 O -0.968 6.968 9 O -0.939 6.939 10 C -0.687 4.687 11 C 0.042 3.958 12 C -0.552 4.552 13 H 0.086 0.914 14 C -0.123 4.123 15 N -0.510 5.510 16 Si 0.718 3.282 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.195 1.195 20 C -0.246 4.246 21 C -0.181 4.181 22 H 0.079 0.921 23 H 0.071 0.929 24 H 0.077 0.923 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.240 0.760 31 H 0.150 0.850 32 H 0.117 0.883 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.525 -10.602 3.083 11.326 hybrid contribution -0.124 0.046 -0.628 0.641 sum 2.401 -10.556 2.456 11.100 Atomic orbital electron populations 1.21830 0.95499 1.01503 1.02722 1.21831 0.96492 0.95832 1.02454 1.20753 0.95212 0.93941 0.85963 0.89581 1.22322 0.95503 1.03781 1.01426 1.56071 1.85454 1.31515 1.15290 1.05142 0.77619 0.71767 0.75139 1.93498 1.86892 1.82708 1.33707 1.93532 1.50567 1.73146 1.76701 1.29985 1.17810 1.06083 1.14811 1.18272 0.91996 0.88747 0.96802 1.20522 1.22917 1.18500 0.93280 0.91391 1.24948 0.94175 0.96167 0.97007 1.69984 1.39367 1.37350 1.04329 0.86585 0.79980 0.82947 0.78700 1.20039 1.21098 1.19454 1.23195 1.08600 1.01492 0.91309 1.22552 0.96267 1.01187 0.98088 0.92146 0.92851 0.92335 0.90924 0.91599 0.92625 0.92012 0.90642 0.76033 0.84974 0.88324 0.92775 0.90710 0.89554 0.89615 0.91556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 9.80 37.16 0.36 -1.32 16 2 C -0.13 -1.31 5.53 -26.73 -0.15 -1.46 16 3 C 0.15 1.99 2.67 -67.93 -0.18 1.81 16 4 H 0.09 1.24 7.31 -51.93 -0.38 0.86 16 5 C -0.17 -2.21 9.51 37.16 0.35 -1.86 16 6 N -1.13 -16.67 4.81 -4.89 -0.02 -16.70 16 7 S 2.61 52.57 5.11 -107.50 -0.55 52.02 16 8 O -0.98 -21.63 18.08 -57.54 -1.04 -22.67 16 9 O -0.95 -22.50 16.74 -57.54 -0.96 -23.46 16 10 C -0.55 -11.52 5.77 37.16 0.21 -11.31 16 11 C 0.04 1.07 1.32 -155.66 -0.21 0.87 16 12 C -0.52 -14.11 8.19 -34.44 -0.28 -14.39 16 13 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 14 C 0.08 2.23 5.38 -17.82 -0.10 2.14 16 15 N -0.87 -23.91 12.98 55.43 0.72 -23.19 16 16 Si 0.89 21.40 29.55 -169.99 -5.02 16.38 16 17 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 20 C -0.21 -4.62 9.96 -26.69 -0.27 -4.88 16 21 C -0.14 -3.23 9.49 -26.69 -0.25 -3.49 16 22 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 23 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.06 0.64 7.75 -51.93 -0.40 0.24 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 1.17 7.39 -51.93 -0.38 0.79 16 30 H 0.41 5.05 8.80 -34.47 -0.30 4.75 16 31 H 0.13 2.84 7.65 -51.92 -0.40 2.44 16 32 H 0.10 1.74 8.09 -51.92 -0.42 1.32 16 33 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16 34 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 35 H 0.09 1.89 8.14 -51.93 -0.42 1.47 16 36 H 0.09 2.06 8.14 -51.93 -0.42 1.64 16 37 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 320.78 15.07 4.83 4.83 Total: -1.00 -31.88 320.78 -8.61 -40.49 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -6.06 Total: 6.21 kcal Atomic # 6 Polarization: -33.39 SS G_CDS: -0.50 Total: -33.89 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: 0.70 Total: -39.89 kcal Atomic # 8 Polarization: -44.13 SS G_CDS: -2.00 Total: -46.14 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: 52.57 SS G_CDS: -0.55 Total: 52.02 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.88 -8.61 -40.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331787664.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.212 kcal (2) G-P(sol) polarization free energy of solvation -31.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds