Wall clock time and date at job start Mon Mar 30 2020 00:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47452 * 2 1 4 4 C 1.50706 * 109.46993 * 239.99735 * 2 1 3 5 5 H 1.07999 * 120.00196 * 239.99990 * 4 2 1 6 6 C 1.37879 * 119.99394 * 60.00122 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48490 * 109.47405 * 60.00219 * 8 6 4 10 10 H 1.48503 * 109.46845 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47399 * 299.99813 * 8 6 4 12 12 C 1.53002 * 109.46982 * 120.00142 * 2 1 3 13 13 S 1.81399 * 109.47162 * 299.99601 * 12 2 1 14 14 O 1.42096 * 110.54122 * 291.62427 * 13 12 2 15 15 O 1.42097 * 110.54031 * 68.37597 * 13 12 2 16 16 N 1.65601 * 104.44938 * 180.02562 * 13 12 2 17 17 C 1.46499 * 120.00334 * 64.99936 * 16 13 12 18 18 C 1.53784 * 113.61560 * 244.14001 * 17 16 13 19 19 C 1.53958 * 87.01686 * 220.04648 * 18 17 16 20 20 C 1.53777 * 87.11214 * 25.36207 * 19 18 17 21 21 H 1.09002 * 109.46668 * 299.99645 * 1 2 3 22 22 H 1.08992 * 109.46716 * 59.99948 * 1 2 3 23 23 H 1.09000 * 109.47360 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.46952 * 180.02562 * 3 2 1 25 25 H 1.09001 * 109.46832 * 300.00199 * 3 2 1 26 26 H 1.09002 * 109.47153 * 60.00008 * 3 2 1 27 27 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 28 28 H 1.09004 * 109.46930 * 179.97438 * 12 2 1 29 29 H 1.09004 * 109.47059 * 60.00133 * 12 2 1 30 30 H 0.97004 * 120.00069 * 245.00518 * 16 13 12 31 31 H 1.09005 * 112.84776 * 15.33089 * 17 16 13 32 32 H 1.08994 * 113.61210 * 334.56571 * 18 17 16 33 33 H 1.09004 * 113.61379 * 105.47005 * 18 17 16 34 34 H 1.09005 * 113.53557 * 270.80955 * 19 18 17 35 35 H 1.08992 * 113.66716 * 139.93271 * 19 18 17 36 36 H 1.09005 * 113.61459 * 220.09248 * 20 19 18 37 37 H 1.08995 * 113.69339 * 89.20298 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6533 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3212 -1.1204 -4.0079 9 1 1.8257 -2.5202 -4.0077 10 1 1.8268 -0.4199 -5.2204 11 1 3.8063 -1.1211 -4.0083 12 6 2.0400 -0.7213 1.2493 13 16 1.4354 0.1339 2.7304 14 8 2.0482 1.4099 2.8544 15 8 0.0281 -0.0183 2.8544 16 7 2.0542 -0.7401 3.9936 17 6 3.5027 -0.7965 4.2054 18 6 4.0948 -2.2063 4.0416 19 6 4.9884 -1.8844 5.2533 20 6 3.9058 -0.8820 5.6870 21 1 -0.3633 0.5138 0.8901 22 1 -0.3632 0.5138 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 3.1301 1.4423 -0.0005 25 1 1.6768 1.9563 -0.8900 26 1 1.6768 1.9563 0.8900 27 1 0.7095 1.1618 -3.4843 28 1 3.1301 -0.7217 1.2490 29 1 1.6767 -1.7490 1.2492 30 1 1.4575 -1.2147 4.5933 31 1 4.0419 -0.0292 3.6497 32 1 3.3775 -3.0054 4.2282 33 1 4.6491 -2.3419 3.1129 34 1 5.9348 -1.4155 4.9838 35 1 5.1101 -2.7206 5.9416 36 1 4.3077 0.0499 6.0846 37 1 3.1362 -1.3171 6.3245 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331976563.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:11 Heat of formation + Delta-G solvation = -62.162994 kcal Electronic energy + Delta-G solvation = -18896.905393 eV Core-core repulsion = 15994.884511 eV Total energy + Delta-G solvation = -2902.020883 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.96805 -36.47489 -36.25604 -35.27027 -32.79758 -31.65223 -26.65138 -25.70525 -25.67768 -25.22583 -24.49568 -20.06463 -19.50045 -18.76409 -17.26311 -16.54953 -15.94576 -15.36695 -15.21465 -14.74878 -14.69882 -13.23153 -13.17042 -13.04766 -12.75462 -12.55834 -12.48999 -12.26996 -12.04535 -11.40884 -11.21387 -11.05193 -10.97494 -10.91880 -10.81510 -10.68078 -10.45637 -10.35888 -10.26114 -10.08067 -9.63932 -9.59399 -9.16282 -8.66345 -8.39284 -6.02618 -4.14701 0.90779 3.25592 3.27093 3.32696 3.34180 4.31053 4.38943 4.45880 4.53756 4.71241 4.78081 4.86430 5.20386 5.23268 5.57478 5.61636 5.67076 5.71978 5.76799 5.88443 5.90333 5.99459 6.39371 6.42199 6.71792 6.81078 6.92259 7.03943 7.17480 7.32778 7.51669 7.68363 7.99118 8.10528 8.33938 8.83556 9.50582 10.98654 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.027734 B = 0.006385 C = 0.005627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.348606 B = 4384.562065 C = 4974.706040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.082 3.918 3 C -0.164 4.164 4 C -0.502 4.502 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 C -0.580 4.580 13 S 2.591 3.409 14 O -0.966 6.966 15 O -0.967 6.967 16 N -1.118 6.118 17 C 0.125 3.875 18 C -0.160 4.160 19 C -0.141 4.141 20 C -0.144 4.144 21 H 0.028 0.972 22 H 0.095 0.905 23 H 0.036 0.964 24 H 0.036 0.964 25 H 0.095 0.905 26 H 0.028 0.972 27 H 0.263 0.737 28 H 0.116 0.884 29 H 0.118 0.882 30 H 0.411 0.589 31 H 0.116 0.884 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.783 -5.125 12.863 15.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.079 3.921 3 C -0.221 4.221 4 C -0.542 4.542 5 H 0.076 0.924 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.724 3.276 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.203 1.203 12 C -0.713 4.713 13 S 2.689 3.311 14 O -0.956 6.956 15 O -0.958 6.958 16 N -0.873 5.873 17 C 0.017 3.983 18 C -0.199 4.199 19 C -0.179 4.179 20 C -0.184 4.184 21 H 0.046 0.954 22 H 0.113 0.887 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.113 0.887 26 H 0.047 0.953 27 H 0.073 0.927 28 H 0.135 0.865 29 H 0.137 0.863 30 H 0.244 0.756 31 H 0.134 0.866 32 H 0.106 0.894 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.252 -4.098 12.714 14.354 hybrid contribution 0.482 -1.307 -0.889 1.653 sum 5.734 -5.405 11.826 14.210 Atomic orbital electron populations 1.22272 0.96943 1.00612 1.02304 1.17930 0.92817 0.92203 0.89115 1.22272 0.99667 0.97836 1.02351 1.20909 1.31755 1.12076 0.89429 0.92378 1.24937 0.94898 0.94983 0.98906 1.69792 1.36275 1.22546 1.23565 0.86600 0.79124 0.79714 0.82192 1.20297 1.21183 1.20301 1.30524 1.11140 1.12816 1.16856 1.05650 0.74353 0.75317 0.75755 1.93538 1.78141 1.38313 1.85585 1.93547 1.29674 1.86734 1.85819 1.55827 1.13680 1.70564 1.47180 1.22331 0.80194 0.97823 0.97958 1.23574 0.99330 0.97863 0.99180 1.22742 0.97557 0.99464 0.98172 1.23286 0.98738 1.00089 0.96244 0.95369 0.88675 0.94495 0.94516 0.88688 0.95301 0.92696 0.86543 0.86314 0.75621 0.86606 0.89447 0.90591 0.89807 0.91086 0.90831 0.89674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.06 7.78 37.16 0.29 -3.77 16 2 C 0.08 1.98 0.52 -155.65 -0.08 1.90 16 3 C -0.16 -4.04 7.78 37.16 0.29 -3.75 16 4 C -0.50 -13.18 8.01 -34.44 -0.28 -13.46 16 5 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 6 C 0.06 1.72 5.15 -17.82 -0.09 1.63 16 7 N -0.88 -24.18 9.35 55.43 0.52 -23.66 16 8 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 C -0.58 -11.25 5.01 37.16 0.19 -11.07 16 13 S 2.59 48.00 4.47 -107.50 -0.48 47.52 16 14 O -0.97 -20.37 15.19 -57.54 -0.87 -21.25 16 15 O -0.97 -20.46 15.70 -57.54 -0.90 -21.36 16 16 N -1.12 -15.16 5.68 -4.20 -0.02 -15.18 16 17 C 0.13 1.48 4.31 -67.12 -0.29 1.19 16 18 C -0.16 -1.57 7.89 -25.82 -0.20 -1.78 16 19 C -0.14 -1.17 8.09 -25.83 -0.21 -1.38 16 20 C -0.14 -1.36 7.86 -25.92 -0.20 -1.57 16 21 H 0.03 0.66 5.46 -51.93 -0.28 0.38 16 22 H 0.09 2.54 6.07 -51.93 -0.32 2.22 16 23 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.09 2.53 6.07 -51.93 -0.32 2.21 16 26 H 0.03 0.68 5.46 -51.93 -0.28 0.39 16 27 H 0.26 6.89 8.31 -40.82 -0.34 6.56 16 28 H 0.12 2.03 8.14 -51.92 -0.42 1.61 16 29 H 0.12 2.10 8.14 -51.92 -0.42 1.68 16 30 H 0.41 4.70 8.90 -34.47 -0.31 4.39 16 31 H 0.12 1.43 7.75 -51.93 -0.40 1.02 16 32 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 300.82 15.07 4.53 4.53 Total: -1.00 -31.37 300.82 -8.52 -39.89 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -5.68 Total: 5.95 kcal Atomic # 6 Polarization: -31.47 SS G_CDS: -0.59 Total: -32.06 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: 0.49 Total: -38.84 kcal Atomic # 8 Polarization: -40.83 SS G_CDS: -1.78 Total: -42.61 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: 48.00 SS G_CDS: -0.48 Total: 47.52 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.37 -8.52 -39.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331976563.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.277 kcal (2) G-P(sol) polarization free energy of solvation -31.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds