Wall clock time and date at job start Mon Mar 30 2020 00:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47346 * 2 1 4 4 C 1.53001 * 109.46637 * 239.99940 * 2 1 3 5 5 C 1.50697 * 109.47291 * 60.00213 * 4 2 1 6 6 H 1.08006 * 119.99920 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00428 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99563 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00432 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47116 * 59.99479 * 9 7 5 11 11 H 1.48490 * 109.47381 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46756 * 300.00079 * 9 7 5 13 13 C 1.53000 * 109.47233 * 120.00458 * 2 1 3 14 14 N 1.46499 * 109.46840 * 299.99500 * 13 2 1 15 15 S 1.65599 * 120.00012 * 165.00017 * 14 13 2 16 16 O 1.42099 * 104.27938 * 181.07373 * 15 14 13 17 17 O 1.42106 * 104.27874 * 308.93199 * 15 14 13 18 18 C 1.81401 * 104.44946 * 65.00106 * 15 14 13 19 19 C 1.53003 * 117.50275 * 253.62393 * 18 15 14 20 20 C 1.53003 * 60.00051 * 252.50919 * 19 18 15 21 21 H 1.09000 * 109.46986 * 299.99746 * 1 2 3 22 22 H 1.08993 * 109.47662 * 59.99968 * 1 2 3 23 23 H 1.09002 * 109.47075 * 180.02562 * 1 2 3 24 24 H 1.08992 * 109.47554 * 180.02562 * 3 2 1 25 25 H 1.09004 * 109.47108 * 300.00289 * 3 2 1 26 26 H 1.09000 * 109.46870 * 60.00183 * 3 2 1 27 27 H 1.09001 * 109.47109 * 179.97438 * 4 2 1 28 28 H 1.09002 * 109.47508 * 299.99876 * 4 2 1 29 29 H 0.97000 * 119.99425 * 180.02562 * 8 7 5 30 30 H 1.09002 * 109.47398 * 59.99826 * 13 2 1 31 31 H 1.09001 * 109.47194 * 180.02562 * 13 2 1 32 32 H 0.97001 * 120.00191 * 345.00817 * 14 13 2 33 33 H 1.09003 * 115.54580 * 39.32860 * 18 15 14 34 34 H 1.09004 * 117.49388 * 0.02562 * 19 18 15 35 35 H 1.09000 * 117.49780 * 145.01552 * 19 18 15 36 36 H 1.09001 * 117.49388 * 252.51340 * 20 19 18 37 37 H 1.08995 * 117.49796 * 107.48635 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5376 -0.0109 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8710 -0.4816 -3.7320 8 7 2.6278 -1.5504 -3.8527 9 14 1.2489 0.3994 -5.2572 10 1 1.7440 1.7995 -5.2567 11 1 1.7436 -0.3007 -6.4697 12 1 -0.2361 0.3995 -5.2576 13 6 2.0401 -0.7213 1.2492 14 7 1.5518 -0.0307 2.4454 15 16 1.6258 -0.7782 3.9212 16 8 1.0525 0.1619 4.8194 17 8 1.0211 -2.0456 3.7028 18 6 3.4007 -0.9671 4.2445 19 6 3.9967 -2.3705 4.1174 20 6 3.8120 -1.7401 5.4992 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 3.1300 1.4425 -0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6768 1.9562 0.8900 27 1 3.1299 -0.7209 -1.2496 28 1 1.6766 -1.7490 -1.2493 29 1 2.8627 -1.8813 -4.7337 30 1 1.6767 -1.7490 1.2492 31 1 3.1301 -0.7209 1.2494 32 1 1.1851 0.8644 2.3729 33 1 4.0253 -0.1256 3.9444 34 1 3.3222 -3.1803 3.8390 35 1 5.0135 -2.4526 3.7334 36 1 4.7074 -1.4074 6.0243 37 1 3.0160 -2.1352 6.1303 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344968263.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:21:33 Heat of formation + Delta-G solvation = -64.705597 kcal Electronic energy + Delta-G solvation = -18362.161297 eV Core-core repulsion = 15460.030158 eV Total energy + Delta-G solvation = -2902.131138 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -37.72502 -37.34012 -36.81544 -35.88163 -33.53467 -31.88780 -27.03478 -26.45680 -25.81287 -23.66095 -22.85381 -22.73180 -19.18372 -18.40395 -17.72761 -16.79533 -16.35248 -15.95868 -15.26647 -14.56524 -14.43334 -14.13314 -13.66772 -13.34675 -12.81501 -12.42487 -12.17082 -12.07332 -11.98503 -11.89036 -11.82718 -11.32934 -11.30429 -11.19484 -10.98353 -10.85508 -10.67826 -10.60197 -10.38388 -10.25216 -9.87640 -9.22582 -9.12871 -8.90412 -8.35836 -6.00663 -4.01328 0.34703 2.72505 3.09944 3.32303 3.37458 3.39410 3.82423 4.13950 4.36963 4.45225 4.58380 4.76032 5.18073 5.30168 5.35232 5.37337 5.54019 5.58946 5.68275 5.76950 5.87435 6.14244 6.26493 6.35874 6.42326 6.67742 6.70767 7.07135 7.10552 7.15367 7.23909 7.62330 7.75867 7.98251 8.41181 9.03112 9.61806 11.10833 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.037310 B = 0.004772 C = 0.004517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.295846 B = 5865.664934 C = 6197.574334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.066 4.066 3 C -0.128 4.128 4 C 0.034 3.966 5 C -0.511 4.511 6 H 0.059 0.941 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.124 3.876 14 N -1.110 6.110 15 S 2.640 3.360 16 O -0.966 6.966 17 O -0.954 6.954 18 C -0.687 4.687 19 C -0.124 4.124 20 C -0.131 4.131 21 H 0.032 0.968 22 H 0.065 0.935 23 H 0.048 0.952 24 H 0.047 0.953 25 H 0.067 0.933 26 H 0.031 0.969 27 H 0.018 0.982 28 H 0.019 0.981 29 H 0.260 0.740 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.416 0.584 33 H 0.158 0.842 34 H 0.119 0.881 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.973 1.092 15.598 15.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.067 4.067 3 C -0.186 4.186 4 C -0.004 4.004 5 C -0.549 4.549 6 H 0.077 0.923 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.717 3.283 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.001 4.001 14 N -0.872 5.872 15 S 2.730 3.270 16 O -0.956 6.956 17 O -0.944 6.944 18 C -0.794 4.794 19 C -0.162 4.162 20 C -0.170 4.170 21 H 0.051 0.949 22 H 0.083 0.917 23 H 0.067 0.933 24 H 0.066 0.934 25 H 0.086 0.914 26 H 0.050 0.950 27 H 0.036 0.964 28 H 0.038 0.962 29 H 0.070 0.930 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.252 0.748 33 H 0.176 0.824 34 H 0.137 0.863 35 H 0.131 0.869 36 H 0.130 0.870 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.415 0.530 16.011 16.201 hybrid contribution 0.391 1.101 -1.263 1.720 sum 2.806 1.632 14.748 15.101 Atomic orbital electron populations 1.21750 0.95120 1.01328 1.00337 1.20809 0.95721 0.95653 0.94559 1.21766 1.00313 0.96088 1.00383 1.19128 0.96225 0.95351 0.89657 1.21165 1.31112 1.12088 0.90539 0.92300 1.25000 0.95316 0.95075 0.99048 1.69949 1.36996 1.23097 1.23519 0.86711 0.79211 0.79737 0.82639 1.20361 1.21421 1.20312 1.21567 0.97835 0.96390 0.84315 1.55475 1.78334 1.30467 1.22919 1.03913 0.75801 0.74180 0.73108 1.93575 1.74971 1.62680 1.64409 1.93597 1.72240 1.43883 1.84637 1.32662 1.27147 1.05353 1.14252 1.22868 1.03505 0.90960 0.98875 1.22731 1.04147 1.00303 0.89811 0.94866 0.91652 0.93283 0.93429 0.91443 0.95036 0.96397 0.96229 0.93022 0.90592 0.92237 0.74814 0.82378 0.86284 0.86945 0.86975 0.87723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.36 8.05 37.16 0.30 -2.06 16 2 C -0.07 -1.23 0.55 -154.51 -0.08 -1.31 16 3 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 4 C 0.03 0.81 4.04 -27.88 -0.11 0.70 16 5 C -0.51 -13.42 7.65 -34.44 -0.26 -13.68 16 6 H 0.06 1.50 5.68 -52.48 -0.30 1.20 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.02 13.29 55.43 0.74 -25.28 16 9 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 C 0.12 1.97 5.02 -4.04 -0.02 1.95 16 14 N -1.11 -15.19 5.22 -10.61 -0.06 -15.25 16 15 S 2.64 34.90 5.82 -107.50 -0.63 34.27 16 16 O -0.97 -15.21 18.08 -57.54 -1.04 -16.25 16 17 O -0.95 -15.41 16.80 -57.54 -0.97 -16.37 16 18 C -0.69 -6.88 6.49 -26.73 -0.17 -7.05 16 19 C -0.12 -1.13 10.17 -26.73 -0.27 -1.40 16 20 C -0.13 -1.09 10.30 -26.73 -0.28 -1.37 16 21 H 0.03 0.53 7.20 -51.93 -0.37 0.15 16 22 H 0.06 1.28 6.62 -51.93 -0.34 0.93 16 23 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 26 H 0.03 0.45 6.60 -51.93 -0.34 0.10 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 30 H 0.08 1.25 7.69 -51.93 -0.40 0.85 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.42 5.34 6.44 -34.47 -0.22 5.12 16 33 H 0.16 1.37 8.14 -51.93 -0.42 0.95 16 34 H 0.12 1.13 7.68 -51.93 -0.40 0.73 16 35 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 311.94 15.07 4.70 4.70 Total: -1.00 -32.45 311.94 -8.63 -41.08 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -5.66 Total: 1.71 kcal Atomic # 6 Polarization: -23.97 SS G_CDS: -0.70 Total: -24.67 kcal Atomic # 7 Polarization: -41.21 SS G_CDS: 0.68 Total: -40.53 kcal Atomic # 8 Polarization: -30.61 SS G_CDS: -2.01 Total: -32.62 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 34.90 SS G_CDS: -0.63 Total: 34.27 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.45 -8.63 -41.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344968263.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.626 kcal (2) G-P(sol) polarization free energy of solvation -32.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds