Wall clock time and date at job start Mon Mar 30 2020 00:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47223 * 2 1 4 4 H 1.09000 * 109.73176 * 305.40540 * 3 2 1 5 5 C 1.53175 * 109.60397 * 185.00064 * 3 2 1 6 6 N 1.46470 * 109.90185 * 177.60460 * 5 3 2 7 7 C 1.46901 * 111.00373 * 196.99591 * 6 5 3 8 8 C 1.50692 * 109.47343 * 168.09674 * 7 6 5 9 9 H 1.07999 * 120.00061 * 0.02562 * 8 7 6 10 10 C 1.37879 * 120.00434 * 180.02562 * 8 7 6 11 11 N 1.31512 * 120.00629 * 180.02562 * 10 8 7 12 12 Si 1.86803 * 119.99483 * 0.02562 * 10 8 7 13 13 H 1.48499 * 109.47140 * 89.99840 * 12 10 8 14 14 H 1.48501 * 109.47211 * 209.99756 * 12 10 8 15 15 H 1.48498 * 109.47426 * 329.99818 * 12 10 8 16 16 C 1.46474 * 112.46113 * 71.96630 * 6 5 3 17 17 C 1.53179 * 109.82776 * 288.08051 * 16 6 5 18 18 H 1.08997 * 109.60556 * 182.35124 * 17 16 6 19 19 C 1.53003 * 109.60414 * 302.83465 * 17 16 6 20 20 S 1.81644 * 108.76766 * 62.67248 * 17 16 6 21 21 O 1.42098 * 108.71291 * 193.38219 * 20 17 16 22 22 O 1.42107 * 108.71978 * 61.87392 * 20 17 16 23 23 H 1.09000 * 109.46794 * 59.99840 * 1 2 3 24 24 H 1.08996 * 109.46756 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46886 * 299.99893 * 1 2 3 26 26 H 1.09001 * 109.47123 * 239.99620 * 2 1 3 27 27 H 1.09001 * 109.47158 * 119.99760 * 2 1 3 28 28 H 1.09004 * 109.40068 * 57.47072 * 5 3 2 29 29 H 1.09008 * 109.40131 * 297.73647 * 5 3 2 30 30 H 1.08999 * 109.47713 * 288.10555 * 7 6 5 31 31 H 1.09008 * 109.46775 * 48.09913 * 7 6 5 32 32 H 0.96993 * 120.00376 * 179.97438 * 11 10 8 33 33 H 1.09002 * 109.40186 * 48.16867 * 16 6 5 34 34 H 1.09003 * 109.40240 * 167.99448 * 16 6 5 35 35 H 1.09005 * 109.46977 * 60.00169 * 19 17 16 36 36 H 1.08992 * 109.47549 * 179.97438 * 19 17 16 37 37 H 1.09001 * 109.47092 * 300.00197 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6023 1.9876 -0.8363 5 6 3.5666 1.4478 -0.1258 6 7 4.0573 2.8267 -0.1838 7 6 5.4318 2.8751 -0.6999 8 6 5.7979 4.3012 -1.0209 9 1 5.0814 5.0926 -0.8575 10 6 7.0477 4.5959 -1.5232 11 7 7.3674 5.8405 -1.8029 12 14 8.2868 3.2270 -1.8066 13 1 8.1312 2.6958 -3.1845 14 1 9.6619 3.7606 -1.6342 15 1 8.0526 2.1365 -0.8263 16 6 3.9570 3.5112 1.1073 17 6 2.4893 3.8185 1.4199 18 1 2.4223 4.3644 2.3608 19 6 1.8892 4.6591 0.2911 20 16 1.5817 2.2515 1.5624 21 8 0.1881 2.5283 1.5405 22 8 2.1285 1.5041 2.6402 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.8568 0.9217 -1.0352 29 1 4.0028 0.9443 0.7371 30 1 6.1166 2.4848 0.0529 31 1 5.5021 2.2697 -1.6037 32 1 8.2467 6.0478 -2.1560 33 1 4.3675 2.8718 1.8889 34 1 4.5216 4.4428 1.0680 35 1 1.9517 4.1063 -0.6463 36 1 0.8449 4.8761 0.5154 37 1 2.4433 5.5933 0.1997 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347294721.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:33 Heat of formation + Delta-G solvation = -70.889453 kcal Electronic energy + Delta-G solvation = -19144.914788 eV Core-core repulsion = 16242.515498 eV Total energy + Delta-G solvation = -2902.399290 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.34877 -36.85024 -35.99079 -35.09809 -33.32143 -32.18811 -29.60053 -27.43504 -25.65625 -23.26282 -22.21996 -21.77641 -20.23670 -18.38087 -17.07586 -16.70120 -16.57436 -15.47953 -15.17767 -14.84619 -14.36325 -14.00871 -13.94063 -13.79394 -12.86070 -12.74082 -12.57703 -12.33740 -12.22964 -11.89959 -11.84993 -11.81067 -11.70553 -11.37886 -11.24878 -11.08182 -10.98711 -10.66680 -10.60227 -10.20575 -10.00466 -9.65817 -9.39722 -8.69330 -7.72415 -6.17461 -4.16495 0.21137 2.81036 3.19722 3.28030 3.28991 3.72973 3.99663 4.30600 4.36448 4.58943 4.68970 4.82996 4.95840 5.11149 5.15522 5.25906 5.32744 5.34423 5.57476 5.68579 5.82592 5.86374 5.90688 5.96607 6.03936 6.11344 6.15948 6.34423 6.53278 6.64739 6.75680 7.37735 7.54079 7.75878 8.47330 8.89716 9.43044 10.95058 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.031218 B = 0.006512 C = 0.005929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.703471 B = 4298.900409 C = 4721.647956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.107 4.107 3 C -0.552 4.552 4 H 0.146 0.854 5 C 0.065 3.935 6 N -0.540 5.540 7 C 0.166 3.834 8 C -0.517 4.517 9 H 0.084 0.916 10 C 0.071 3.929 11 N -0.896 5.896 12 Si 0.873 3.127 13 H -0.275 1.275 14 H -0.285 1.285 15 H -0.267 1.267 16 C 0.071 3.929 17 C -0.551 4.551 18 H 0.132 0.868 19 C -0.127 4.127 20 S 2.402 3.598 21 O -0.946 6.946 22 O -0.948 6.948 23 H 0.066 0.934 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.087 0.913 27 H 0.076 0.924 28 H 0.093 0.907 29 H 0.046 0.954 30 H -0.004 1.004 31 H 0.031 0.969 32 H 0.265 0.735 33 H 0.043 0.957 34 H 0.118 0.882 35 H 0.081 0.919 36 H 0.061 0.939 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.336 -8.620 3.724 13.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.146 4.146 3 C -0.663 4.663 4 H 0.164 0.836 5 C -0.064 4.064 6 N -0.264 5.264 7 C 0.041 3.959 8 C -0.555 4.555 9 H 0.102 0.898 10 C -0.131 4.131 11 N -0.534 5.534 12 Si 0.700 3.300 13 H -0.201 1.201 14 H -0.211 1.211 15 H -0.192 1.192 16 C -0.058 4.058 17 C -0.663 4.663 18 H 0.150 0.850 19 C -0.185 4.185 20 S 2.587 3.413 21 O -0.943 6.943 22 O -0.945 6.945 23 H 0.085 0.915 24 H 0.084 0.916 25 H 0.086 0.914 26 H 0.105 0.895 27 H 0.095 0.905 28 H 0.111 0.889 29 H 0.064 0.936 30 H 0.014 0.986 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.136 0.864 35 H 0.100 0.900 36 H 0.080 0.920 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -11.024 -8.564 4.037 14.532 hybrid contribution 1.790 -0.688 -0.299 1.940 sum -9.235 -9.251 3.738 13.596 Atomic orbital electron populations 1.22133 0.94784 1.02896 1.03729 1.21323 0.96345 0.92446 1.04517 1.30051 1.05826 1.08156 1.22233 0.83580 1.21869 0.89329 0.91934 1.03286 1.61137 1.27153 1.12826 1.25293 1.20184 0.82195 0.99202 0.94318 1.20996 0.99763 0.91464 1.43257 0.89776 1.24880 0.97959 0.95300 0.94974 1.69873 1.21519 1.17786 1.44234 0.86901 0.81177 0.82784 0.79130 1.20096 1.21102 1.19175 1.21833 0.91067 1.02781 0.90103 1.29960 1.09468 1.18862 1.07962 0.84971 1.21499 0.99566 1.01166 0.96290 1.08662 0.76119 0.78620 0.77906 1.93527 1.29068 1.84710 1.87032 1.93540 1.80592 1.69834 1.50538 0.91475 0.91561 0.91441 0.89483 0.90521 0.88850 0.93563 0.98637 0.95111 0.92492 0.93855 0.86403 0.89988 0.91989 0.90066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.94 9.61 37.16 0.36 -1.58 16 2 C -0.11 -1.22 5.39 -26.73 -0.14 -1.36 16 3 C -0.55 -7.28 2.26 -26.64 -0.06 -7.34 16 4 H 0.15 1.76 7.36 -51.93 -0.38 1.38 16 5 C 0.07 0.99 4.69 -3.97 -0.02 0.97 16 6 N -0.54 -9.86 3.55 -236.56 -0.84 -10.70 16 7 C 0.17 3.64 3.80 -4.98 -0.02 3.62 16 8 C -0.52 -13.46 8.82 -34.44 -0.30 -13.77 16 9 H 0.08 2.36 7.51 -52.49 -0.39 1.96 16 10 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 11 N -0.90 -26.07 13.96 55.43 0.77 -25.29 16 12 Si 0.87 20.29 27.47 -169.99 -4.67 15.62 16 13 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 14 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 15 H -0.27 -5.95 6.54 56.52 0.37 -5.58 16 16 C 0.07 1.23 4.72 -3.96 -0.02 1.21 16 17 C -0.55 -8.06 3.40 -26.64 -0.09 -8.15 16 18 H 0.13 1.65 8.14 -51.93 -0.42 1.23 16 19 C -0.13 -1.81 8.79 37.16 0.33 -1.48 16 20 S 2.40 35.79 3.85 -107.50 -0.41 35.38 16 21 O -0.95 -15.37 15.72 -57.79 -0.91 -16.28 16 22 O -0.95 -16.49 17.93 -57.79 -1.04 -17.53 16 23 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.07 0.84 5.85 -51.93 -0.30 0.54 16 26 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.08 0.86 8.01 -51.93 -0.42 0.45 16 28 H 0.09 1.31 7.75 -51.93 -0.40 0.91 16 29 H 0.05 0.69 7.93 -51.92 -0.41 0.28 16 30 H 0.00 -0.09 7.18 -51.93 -0.37 -0.46 16 31 H 0.03 0.66 7.22 -51.92 -0.38 0.29 16 32 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 33 H 0.04 0.72 7.93 -51.93 -0.41 0.31 16 34 H 0.12 2.26 6.56 -51.93 -0.34 1.92 16 35 H 0.08 1.18 6.45 -51.93 -0.33 0.85 16 36 H 0.06 0.77 7.95 -51.93 -0.41 0.36 16 37 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 296.92 15.07 4.47 4.47 Total: -1.00 -31.04 296.92 -8.53 -39.57 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -5.84 Total: 0.79 kcal Atomic # 6 Polarization: -25.96 SS G_CDS: -0.07 Total: -26.03 kcal Atomic # 7 Polarization: -35.92 SS G_CDS: -0.07 Total: -35.99 kcal Atomic # 8 Polarization: -31.86 SS G_CDS: -1.94 Total: -33.81 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.67 Total: 15.62 kcal Atomic # 16 Polarization: 35.79 SS G_CDS: -0.41 Total: 35.38 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.04 -8.53 -39.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347294721.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.317 kcal (2) G-P(sol) polarization free energy of solvation -31.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds