Wall clock time and date at job start Mon Mar 30 2020 00:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47223 * 2 1 4 4 H 1.09000 * 109.73176 * 305.40540 * 3 2 1 5 5 C 1.53175 * 109.60397 * 185.00064 * 3 2 1 6 6 N 1.46470 * 109.90185 * 177.60460 * 5 3 2 7 7 C 1.46901 * 111.00373 * 196.99591 * 6 5 3 8 8 C 1.50692 * 109.47343 * 168.09674 * 7 6 5 9 9 H 1.07999 * 120.00061 * 0.02562 * 8 7 6 10 10 C 1.37879 * 120.00434 * 180.02562 * 8 7 6 11 11 N 1.31512 * 120.00629 * 180.02562 * 10 8 7 12 12 Si 1.86803 * 119.99483 * 0.02562 * 10 8 7 13 13 H 1.48499 * 109.47140 * 89.99840 * 12 10 8 14 14 H 1.48501 * 109.47211 * 209.99756 * 12 10 8 15 15 H 1.48498 * 109.47426 * 329.99818 * 12 10 8 16 16 C 1.46474 * 112.46113 * 71.96630 * 6 5 3 17 17 C 1.53179 * 109.82776 * 288.08051 * 16 6 5 18 18 H 1.08997 * 109.60556 * 182.35124 * 17 16 6 19 19 C 1.53003 * 109.60414 * 302.83465 * 17 16 6 20 20 S 1.81644 * 108.76766 * 62.67248 * 17 16 6 21 21 O 1.42098 * 108.71291 * 193.38219 * 20 17 16 22 22 O 1.42107 * 108.71978 * 61.87392 * 20 17 16 23 23 H 1.09000 * 109.46794 * 59.99840 * 1 2 3 24 24 H 1.08996 * 109.46756 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46886 * 299.99893 * 1 2 3 26 26 H 1.09001 * 109.47123 * 239.99620 * 2 1 3 27 27 H 1.09001 * 109.47158 * 119.99760 * 2 1 3 28 28 H 1.09004 * 109.40068 * 57.47072 * 5 3 2 29 29 H 1.09008 * 109.40131 * 297.73647 * 5 3 2 30 30 H 1.08999 * 109.47713 * 288.10555 * 7 6 5 31 31 H 1.09008 * 109.46775 * 48.09913 * 7 6 5 32 32 H 0.96993 * 120.00376 * 179.97438 * 11 10 8 33 33 H 1.09002 * 109.40186 * 48.16867 * 16 6 5 34 34 H 1.09003 * 109.40240 * 167.99448 * 16 6 5 35 35 H 1.09005 * 109.46977 * 60.00169 * 19 17 16 36 36 H 1.08992 * 109.47549 * 179.97438 * 19 17 16 37 37 H 1.09001 * 109.47092 * 300.00197 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6023 1.9876 -0.8363 5 6 3.5666 1.4478 -0.1258 6 7 4.0573 2.8267 -0.1838 7 6 5.4318 2.8751 -0.6999 8 6 5.7979 4.3012 -1.0209 9 1 5.0814 5.0926 -0.8575 10 6 7.0477 4.5959 -1.5232 11 7 7.3674 5.8405 -1.8029 12 14 8.2868 3.2270 -1.8066 13 1 8.1312 2.6958 -3.1845 14 1 9.6619 3.7606 -1.6342 15 1 8.0526 2.1365 -0.8263 16 6 3.9570 3.5112 1.1073 17 6 2.4893 3.8185 1.4199 18 1 2.4223 4.3644 2.3608 19 6 1.8892 4.6591 0.2911 20 16 1.5817 2.2515 1.5624 21 8 0.1881 2.5283 1.5405 22 8 2.1285 1.5041 2.6402 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.8568 0.9217 -1.0352 29 1 4.0028 0.9443 0.7371 30 1 6.1166 2.4848 0.0529 31 1 5.5021 2.2697 -1.6037 32 1 8.2467 6.0478 -2.1560 33 1 4.3675 2.8718 1.8889 34 1 4.5216 4.4428 1.0680 35 1 1.9517 4.1063 -0.6463 36 1 0.8449 4.8761 0.5154 37 1 2.4433 5.5933 0.1997 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347294721.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:33 Heat of formation + Delta-G solvation = -93.469678 kcal Electronic energy + Delta-G solvation = -19145.893940 eV Core-core repulsion = 16242.515498 eV Total energy + Delta-G solvation = -2903.378442 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.70097 -38.10528 -37.21959 -36.17948 -35.02518 -33.79465 -30.91563 -28.96593 -27.02557 -24.47279 -23.70384 -22.88763 -21.65521 -19.57928 -18.95617 -17.97309 -17.78181 -16.76804 -16.60763 -16.28138 -15.81908 -15.61442 -14.96308 -14.81581 -14.51385 -14.04923 -13.91557 -13.56650 -13.55963 -13.27029 -13.13585 -13.08059 -12.99674 -12.66638 -12.57987 -12.30185 -12.14943 -12.03493 -11.96147 -11.83008 -11.57653 -11.30084 -10.77234 -10.73448 -9.19520 -8.25087 -6.28180 -0.96909 1.38028 1.40115 1.48852 1.64459 2.36678 2.57238 2.72222 3.08448 3.10964 3.42766 3.61268 3.66323 3.92867 4.03084 4.13067 4.26331 4.38936 4.49665 4.65960 4.68942 4.74812 4.81067 4.89651 4.93727 4.97261 5.05501 5.08797 5.12365 5.35099 5.36293 5.53238 5.86296 6.18305 6.55237 6.79644 7.35113 8.90722 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.031218 B = 0.006512 C = 0.005929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.703471 B = 4298.900409 C = 4721.647956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.110 4.110 3 C -0.537 4.537 4 H 0.162 0.838 5 C 0.060 3.940 6 N -0.547 5.547 7 C 0.171 3.829 8 C -0.514 4.514 9 H 0.048 0.952 10 C 0.010 3.990 11 N -0.947 5.947 12 Si 0.940 3.060 13 H -0.265 1.265 14 H -0.289 1.289 15 H -0.248 1.248 16 C 0.070 3.930 17 C -0.551 4.551 18 H 0.150 0.850 19 C -0.128 4.128 20 S 2.409 3.591 21 O -0.960 6.960 22 O -0.974 6.974 23 H 0.075 0.925 24 H 0.087 0.913 25 H 0.047 0.953 26 H 0.112 0.888 27 H 0.077 0.923 28 H 0.112 0.888 29 H 0.052 0.948 30 H -0.004 1.004 31 H 0.044 0.956 32 H 0.265 0.735 33 H 0.049 0.951 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.889 -11.123 3.254 15.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.148 4.148 3 C -0.650 4.650 4 H 0.179 0.821 5 C -0.069 4.069 6 N -0.271 5.271 7 C 0.045 3.955 8 C -0.553 4.553 9 H 0.067 0.933 10 C -0.187 4.187 11 N -0.588 5.588 12 Si 0.764 3.236 13 H -0.190 1.190 14 H -0.215 1.215 15 H -0.171 1.171 16 C -0.059 4.059 17 C -0.662 4.662 18 H 0.168 0.832 19 C -0.186 4.186 20 S 2.596 3.404 21 O -0.957 6.957 22 O -0.971 6.971 23 H 0.094 0.906 24 H 0.105 0.895 25 H 0.066 0.934 26 H 0.131 0.869 27 H 0.095 0.905 28 H 0.130 0.870 29 H 0.070 0.930 30 H 0.014 0.986 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.108 0.892 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.611 -11.074 3.601 16.444 hybrid contribution 1.876 0.134 -0.139 1.886 sum -9.735 -10.939 3.463 15.048 Atomic orbital electron populations 1.22189 0.94433 1.04216 1.03187 1.21443 0.96683 0.90904 1.05811 1.29965 1.04565 1.09687 1.20766 0.82070 1.22013 0.90362 0.89974 1.04507 1.61015 1.25069 1.15178 1.25822 1.19990 0.84266 0.96313 0.94929 1.21269 0.98964 0.93070 1.41955 0.93340 1.25768 1.00287 0.97630 0.95047 1.70033 1.22191 1.20282 1.46264 0.85830 0.78013 0.80005 0.79791 1.19040 1.21500 1.17118 1.21758 0.92590 1.01532 0.90014 1.29972 1.07597 1.19635 1.09020 0.83222 1.21514 1.00501 1.00447 0.96147 1.08378 0.75507 0.78162 0.78341 1.93510 1.29761 1.84891 1.87529 1.93505 1.80896 1.70260 1.52455 0.90604 0.89453 0.93395 0.86924 0.90486 0.86992 0.93016 0.98596 0.93844 0.92586 0.93345 0.89232 0.90161 0.90068 0.91397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.42 9.61 71.98 0.69 -2.73 16 2 C -0.11 -2.10 5.39 30.60 0.16 -1.93 16 3 C -0.54 -12.65 2.26 30.65 0.07 -12.58 16 4 H 0.16 3.37 7.36 -2.39 -0.02 3.35 16 5 C 0.06 1.65 4.69 86.44 0.41 2.05 16 6 N -0.55 -19.23 3.55 -902.35 -3.21 -22.44 16 7 C 0.17 7.26 3.80 85.55 0.32 7.58 16 8 C -0.51 -27.15 8.82 25.60 0.23 -26.92 16 9 H 0.05 2.84 7.51 -2.91 -0.02 2.81 16 10 C 0.01 0.56 5.47 84.66 0.46 1.02 16 11 N -0.95 -56.59 13.96 21.45 0.30 -56.29 16 12 Si 0.94 41.27 27.47 68.60 1.88 43.16 16 13 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 14 H -0.29 -12.78 7.11 99.48 0.71 -12.08 16 15 H -0.25 -10.00 6.54 99.48 0.65 -9.35 16 16 C 0.07 2.41 4.72 86.44 0.41 2.82 16 17 C -0.55 -15.74 3.40 30.66 0.10 -15.63 16 18 H 0.15 3.65 8.14 -2.39 -0.02 3.63 16 19 C -0.13 -3.58 8.79 71.98 0.63 -2.95 16 20 S 2.41 68.00 3.85 -56.49 -0.22 67.78 16 21 O -0.96 -29.71 15.72 -127.41 -2.00 -31.71 16 22 O -0.97 -32.62 17.93 -127.41 -2.28 -34.91 16 23 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.05 1.09 5.85 -2.39 -0.01 1.08 16 26 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.08 1.50 8.01 -2.39 -0.02 1.48 16 28 H 0.11 2.69 7.75 -2.38 -0.02 2.67 16 29 H 0.05 1.39 7.93 -2.38 -0.02 1.37 16 30 H 0.00 -0.16 7.18 -2.39 -0.02 -0.17 16 31 H 0.04 1.75 7.22 -2.38 -0.02 1.73 16 32 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 33 H 0.05 1.59 7.93 -2.39 -0.02 1.57 16 34 H 0.09 3.56 6.56 -2.39 -0.02 3.55 16 35 H 0.08 2.24 6.45 -2.38 -0.02 2.23 16 36 H 0.08 1.93 7.95 -2.39 -0.02 1.91 16 37 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -67.01 296.92 -1.06 -68.06 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: 0.98 Total: 15.60 kcal Atomic # 6 Polarization: -52.75 SS G_CDS: 3.49 Total: -49.26 kcal Atomic # 7 Polarization: -75.82 SS G_CDS: -2.91 Total: -78.73 kcal Atomic # 8 Polarization: -62.33 SS G_CDS: -4.29 Total: -66.62 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 1.88 Total: 43.16 kcal Atomic # 16 Polarization: 68.00 SS G_CDS: -0.22 Total: 67.78 kcal Total: -67.01 -1.06 -68.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347294721.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.406 kcal (2) G-P(sol) polarization free energy of solvation -67.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds