Wall clock time and date at job start Sun Mar 29 2020 23:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 O 1.21256 * 119.99617 * 2 1 4 4 C 1.47180 * 120.00173 * 179.97438 * 2 1 3 5 5 C 1.39624 * 120.10169 * 353.96404 * 4 2 1 6 6 C 1.39228 * 119.67976 * 180.02562 * 5 4 2 7 7 C 1.47864 * 120.05977 * 180.02562 * 6 5 4 8 8 O 1.21547 * 119.99938 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99527 * 179.97438 * 7 6 5 10 10 C 1.46508 * 119.99406 * 179.97438 * 9 7 6 11 11 C 1.50693 * 109.46866 * 180.02562 * 10 9 7 12 12 H 1.08005 * 120.00068 * 359.97438 * 11 10 9 13 13 C 1.37880 * 120.00065 * 180.02562 * 11 10 9 14 14 N 1.31511 * 119.99741 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99904 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46753 * 90.00265 * 15 13 11 17 17 H 1.48501 * 109.46960 * 209.99909 * 15 13 11 18 18 H 1.48495 * 109.47288 * 329.99985 * 15 13 11 19 19 C 1.39749 * 119.87647 * 359.97438 * 6 5 4 20 20 C 1.38097 * 120.20476 * 0.25355 * 19 6 5 21 21 C 1.38026 * 120.32283 * 359.48943 * 20 19 6 22 22 C 1.50699 * 119.94024 * 180.23175 * 21 20 19 23 23 H 1.09003 * 109.46445 * 240.00230 * 1 2 3 24 24 H 1.08997 * 109.46817 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46723 * 120.00607 * 1 2 3 26 26 H 1.07997 * 120.15575 * 0.04130 * 5 4 2 27 27 H 0.96992 * 120.00405 * 0.02562 * 9 7 6 28 28 H 1.08993 * 109.47222 * 300.00386 * 10 9 7 29 29 H 1.09000 * 109.46625 * 60.00426 * 10 9 7 30 30 H 0.97000 * 119.99950 * 180.02562 * 14 13 11 31 31 H 1.08008 * 119.89470 * 179.97438 * 19 6 5 32 32 H 1.07997 * 119.83849 * 179.74846 * 20 19 6 33 33 H 1.09002 * 109.47582 * 263.59189 * 22 21 20 34 34 H 1.09005 * 109.47299 * 23.59775 * 22 21 20 35 35 H 1.09007 * 109.47407 * 143.59337 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2430 -1.2746 0.0006 5 6 1.5529 -2.4816 0.1281 6 6 2.2579 -3.6822 0.1281 7 6 1.5355 -4.9654 0.2621 8 8 0.3251 -4.9727 0.3729 9 7 2.2193 -6.1268 0.2614 10 6 1.5035 -7.3982 0.3948 11 6 2.4911 -8.5360 0.3657 12 1 3.5463 -8.3326 0.2581 13 6 2.0475 -9.8369 0.4752 14 7 0.7624 -10.0847 0.6046 15 14 3.2717 -11.2474 0.4384 16 1 3.7230 -11.5472 1.8210 17 1 2.6233 -12.4505 -0.1425 18 1 4.4417 -10.8658 -0.3925 19 6 3.6495 -3.6723 0.0002 20 6 4.3275 -2.4753 -0.1210 21 6 3.6365 -1.2805 -0.1273 22 6 4.3847 0.0203 -0.2652 23 1 -0.3632 -0.5138 0.8901 24 1 -0.3633 1.0277 0.0005 25 1 -0.3633 -0.5139 -0.8900 26 1 0.4774 -2.4839 0.2261 27 1 3.1852 -6.1210 0.1734 28 1 0.9611 -7.4124 1.3401 29 1 0.7991 -7.5067 -0.4300 30 1 0.4503 -10.9998 0.6821 31 1 4.1968 -4.6034 0.0005 32 1 5.4034 -2.4744 -0.2154 33 1 4.5548 0.4483 0.7228 34 1 5.3427 -0.1614 -0.7523 35 1 3.7977 0.7152 -0.8659 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000447569607.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:59:56 Heat of formation + Delta-G solvation = -80.302648 kcal Electronic energy + Delta-G solvation = -18470.031172 eV Core-core repulsion = 15431.779744 eV Total energy + Delta-G solvation = -3038.251428 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.55157 -40.48197 -38.82954 -36.24778 -34.53473 -33.82956 -33.05433 -30.38434 -29.67354 -28.01898 -25.24988 -24.47785 -23.17001 -21.87753 -20.72702 -19.27514 -18.01087 -17.40815 -16.81105 -16.61245 -16.47668 -16.32296 -16.03885 -15.80523 -15.06409 -14.93044 -14.56547 -14.42347 -14.05051 -14.00512 -13.30636 -13.10932 -12.95931 -12.92045 -12.85303 -12.82859 -12.70265 -12.46493 -12.22260 -11.49670 -11.00670 -10.81259 -10.52318 -10.13456 -10.04091 -9.72208 -8.29305 -6.46055 -0.49811 -0.08589 1.23833 1.44523 1.46647 1.57783 1.92020 2.27285 2.48649 2.77891 3.04597 3.06210 3.63765 3.68324 3.92271 3.99448 4.13572 4.25183 4.49170 4.57870 4.60365 4.68643 4.80403 4.88961 5.00923 5.11214 5.13781 5.21579 5.22322 5.22411 5.43365 5.47340 5.63421 5.74173 5.82886 6.47176 6.63218 6.81278 7.21145 7.37600 8.82920 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.038071 B = 0.003866 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.300447 B = 7240.040952 C = 7948.124134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.399 3.601 3 O -0.478 6.478 4 C -0.197 4.197 5 C -0.013 4.013 6 C -0.164 4.164 7 C 0.539 3.461 8 O -0.596 6.596 9 N -0.699 5.699 10 C 0.265 3.735 11 C -0.558 4.558 12 H 0.085 0.915 13 C 0.006 3.994 14 N -0.930 5.930 15 Si 0.984 3.016 16 H -0.271 1.271 17 H -0.285 1.285 18 H -0.254 1.254 19 C -0.046 4.046 20 C -0.133 4.133 21 C -0.009 4.009 22 C -0.121 4.121 23 H 0.104 0.896 24 H 0.094 0.906 25 H 0.105 0.895 26 H 0.143 0.857 27 H 0.408 0.592 28 H -0.008 1.008 29 H -0.008 1.008 30 H 0.269 0.731 31 H 0.151 0.849 32 H 0.170 0.830 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.584 18.117 -2.153 20.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.281 3.719 3 O -0.356 6.356 4 C -0.198 4.198 5 C -0.032 4.032 6 C -0.167 4.167 7 C 0.328 3.672 8 O -0.479 6.479 9 N -0.349 5.349 10 C 0.143 3.857 11 C -0.595 4.595 12 H 0.103 0.897 13 C -0.194 4.194 14 N -0.569 5.569 15 Si 0.807 3.193 16 H -0.196 1.196 17 H -0.210 1.210 18 H -0.178 1.178 19 C -0.065 4.065 20 C -0.150 4.150 21 C -0.010 4.010 22 C -0.176 4.176 23 H 0.123 0.877 24 H 0.113 0.887 25 H 0.124 0.876 26 H 0.161 0.839 27 H 0.245 0.755 28 H 0.009 0.991 29 H 0.010 0.990 30 H 0.078 0.922 31 H 0.169 0.831 32 H 0.187 0.813 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 7.922 18.475 -2.061 20.207 hybrid contribution 0.116 -1.265 0.094 1.273 sum 8.038 17.210 -1.967 19.096 Atomic orbital electron populations 1.22308 0.91505 1.06013 1.05919 1.22708 0.92821 0.86610 0.69804 1.90476 1.72260 1.34863 1.38048 1.20442 0.94738 0.94578 1.10036 1.21568 1.00930 0.89905 0.90836 1.19867 0.95087 0.92325 1.09418 1.18872 0.86944 0.84933 0.76466 1.90695 1.15861 1.88313 1.53031 1.46124 1.11416 1.05945 1.71367 1.18624 0.92511 0.80265 0.94347 1.21606 0.94361 0.91103 1.52465 0.89666 1.26046 0.97416 1.02176 0.93792 1.70130 1.15833 1.21603 1.49286 0.85161 0.78329 0.76984 0.78782 1.19631 1.21044 1.17801 1.21851 0.92038 1.00406 0.92172 1.21339 1.01968 0.90032 1.01694 1.20760 0.92356 0.97326 0.90555 1.21139 1.00112 0.92898 1.03492 0.87719 0.88698 0.87611 0.83893 0.75530 0.99054 0.99006 0.92208 0.83150 0.81262 0.90138 0.89459 0.90143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.16 9.01 71.24 0.64 -2.51 16 2 C 0.40 8.58 7.16 28.04 0.20 8.78 16 3 O -0.48 -11.94 14.06 -2.95 -0.04 -11.98 16 4 C -0.20 -4.57 5.86 -20.18 -0.12 -4.68 16 5 C -0.01 -0.36 9.01 22.84 0.21 -0.15 16 6 C -0.16 -4.95 5.87 -20.13 -0.12 -5.07 16 7 C 0.54 22.10 7.77 86.79 0.67 22.77 16 8 O -0.60 -29.41 16.34 -3.86 -0.06 -29.48 16 9 N -0.70 -29.45 5.50 -469.69 -2.58 -32.03 16 10 C 0.27 14.37 5.43 85.63 0.46 14.83 16 11 C -0.56 -29.74 9.28 25.60 0.24 -29.50 16 12 H 0.09 4.06 7.60 -2.91 -0.02 4.04 16 13 C 0.01 0.30 5.46 84.66 0.46 0.76 16 14 N -0.93 -55.34 13.29 21.45 0.28 -55.05 16 15 Si 0.98 41.43 29.54 68.60 2.03 43.46 16 16 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 17 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 18 H -0.25 -9.90 7.11 99.48 0.71 -9.19 16 19 C -0.05 -1.05 9.54 22.60 0.22 -0.83 16 20 C -0.13 -2.42 9.64 22.19 0.21 -2.21 16 21 C -0.01 -0.19 5.93 -19.50 -0.12 -0.31 16 22 C -0.12 -2.05 8.72 71.24 0.62 -1.43 16 23 H 0.10 1.50 7.90 -2.39 -0.02 1.48 16 24 H 0.09 1.30 8.12 -2.39 -0.02 1.28 16 25 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.14 3.80 6.57 -2.91 -0.02 3.78 16 27 H 0.41 13.94 6.34 -92.71 -0.59 13.35 16 28 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 29 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 30 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 31 H 0.15 2.87 6.39 -2.91 -0.02 2.85 16 32 H 0.17 1.90 8.05 -2.91 -0.02 1.87 16 33 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.09 1.04 8.04 -2.38 -0.02 1.02 16 35 H 0.08 1.61 5.85 -2.38 -0.01 1.59 16 Total: -1.00 -71.94 304.44 3.74 -68.20 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 0.53 Total: 16.44 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: 3.59 Total: 0.45 kcal Atomic # 7 Polarization: -84.79 SS G_CDS: -2.30 Total: -87.08 kcal Atomic # 8 Polarization: -41.35 SS G_CDS: -0.10 Total: -41.46 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -71.94 3.74 -68.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447569607.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.105 kcal (2) G-P(sol) polarization free energy of solvation -71.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds