Wall clock time and date at job start Sun Mar 29 2020 23:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 119.99885 * 2 1 4 4 H 1.48509 * 109.47441 * 240.00165 * 3 2 1 5 5 H 1.48497 * 109.47264 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47005 * 120.00160 * 3 2 1 7 7 C 1.37879 * 119.99977 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99548 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00415 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47330 * 180.02562 * 9 7 2 11 11 N 1.46498 * 109.47033 * 180.02562 * 10 9 7 12 12 C 1.34779 * 120.00072 * 179.97438 * 11 10 9 13 13 O 1.21694 * 119.99957 * 359.97438 * 12 11 10 14 14 C 1.46426 * 119.99850 * 179.97438 * 12 11 10 15 15 C 1.34806 * 119.99761 * 173.21748 * 14 12 11 16 16 C 1.47216 * 120.00025 * 349.03564 * 15 14 12 17 17 C 1.39873 * 120.14356 * 136.38001 * 16 15 14 18 18 C 1.37896 * 119.93720 * 179.97438 * 17 16 15 19 19 C 1.38329 * 120.23048 * 359.97438 * 18 17 16 20 20 C 1.38858 * 120.29461 * 359.97438 * 19 18 17 21 21 O 1.35903 * 119.97254 * 180.02562 * 20 19 18 22 22 C 1.38430 * 120.05279 * 359.79331 * 20 19 18 23 23 H 0.96999 * 119.99682 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.46948 * 59.99905 * 9 7 2 25 25 H 1.09000 * 109.46749 * 300.00889 * 9 7 2 26 26 H 1.08999 * 109.47100 * 60.00045 * 10 9 7 27 27 H 1.09001 * 109.46855 * 300.00014 * 10 9 7 28 28 H 0.97004 * 119.99785 * 359.97438 * 11 10 9 29 29 H 1.08000 * 120.00640 * 353.21661 * 14 12 11 30 30 H 1.08001 * 120.00146 * 169.03031 * 15 14 12 31 31 H 1.08001 * 120.02979 * 359.95184 * 17 16 15 32 32 H 1.08005 * 119.88218 * 180.02562 * 18 17 16 33 33 H 1.08001 * 119.85072 * 180.02562 * 19 18 17 34 34 H 0.96701 * 114.00001 * 90.00481 * 21 20 19 35 35 H 1.08000 * 120.11509 * 180.23133 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5129 -4.9308 -0.0012 12 6 2.1868 -6.0980 -0.0018 13 8 3.4038 -6.0980 -0.0023 14 6 1.4547 -7.3661 -0.0018 15 6 2.1216 -8.5294 -0.1403 16 6 3.5410 -8.5222 -0.5309 17 6 4.4521 -9.3627 0.1170 18 6 5.7805 -9.3529 -0.2527 19 6 6.2161 -8.5145 -1.2631 20 6 5.3197 -7.6769 -1.9135 21 8 5.7546 -6.8563 -2.9057 22 6 3.9825 -7.6805 -1.5553 23 1 -0.4849 0.8401 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6247 -2.5570 0.8896 26 1 2.8720 -3.6043 0.8894 27 1 2.8720 -3.6043 -0.8905 28 1 0.5429 -4.9308 -0.0011 29 1 0.3804 -7.3695 0.1091 30 1 1.6146 -9.4667 0.0353 31 1 4.1155 -10.0186 0.9063 32 1 6.4832 -10.0026 0.2479 33 1 7.2578 -8.5121 -1.5480 34 1 5.7197 -7.2522 -3.7872 35 1 3.2838 -7.0322 -2.0630 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493652021.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:42:05 Heat of formation + Delta-G solvation = -37.711780 kcal Electronic energy + Delta-G solvation = -18514.470687 eV Core-core repulsion = 15478.066137 eV Total energy + Delta-G solvation = -3036.404550 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.00472 -38.86447 -36.71434 -34.91941 -33.50947 -32.82615 -30.27954 -29.71456 -29.01412 -25.24521 -23.61456 -22.35776 -21.64250 -20.75255 -19.32041 -18.19183 -16.75288 -16.41942 -16.10243 -15.68202 -15.16542 -14.84688 -14.58385 -14.46381 -14.05606 -13.69041 -13.20801 -12.89710 -12.58584 -12.29300 -12.20552 -11.84307 -11.54501 -11.18799 -11.00607 -10.64502 -10.46172 -10.30318 -9.99335 -9.71867 -9.46955 -9.23050 -8.63123 -8.43118 -8.22573 -8.07580 -6.07814 -4.10493 0.74457 1.44169 1.90748 3.32869 3.36239 3.39821 3.63002 3.76675 3.81453 4.25556 4.43885 4.70383 4.92967 5.07593 5.14988 5.26956 5.29203 5.36476 5.57987 5.80424 5.96105 6.12019 6.13220 6.38178 6.38672 6.46529 6.53558 6.61237 6.77178 6.87826 6.96280 7.53530 7.63329 7.76159 7.90586 8.06482 8.30141 8.71189 8.95371 9.54253 11.03822 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.027476 B = 0.004005 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.837967 B = 6990.111148 C = 7683.731152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.122 3.878 11 N -0.715 5.715 12 C 0.523 3.477 13 O -0.534 6.534 14 C -0.197 4.197 15 C -0.042 4.042 16 C -0.051 4.051 17 C -0.111 4.111 18 C -0.121 4.121 19 C -0.138 4.138 20 C 0.091 3.909 21 O -0.495 6.495 22 C -0.058 4.058 23 H 0.262 0.738 24 H 0.022 0.978 25 H 0.022 0.978 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.397 0.603 29 H 0.133 0.867 30 H 0.135 0.865 31 H 0.121 0.879 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.382 0.618 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.526 -20.895 -2.903 21.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.560 4.560 8 H 0.077 0.923 9 C -0.025 4.025 10 C 0.000 4.000 11 N -0.364 5.364 12 C 0.310 3.690 13 O -0.414 6.414 14 C -0.218 4.218 15 C -0.062 4.062 16 C -0.051 4.051 17 C -0.129 4.129 18 C -0.139 4.139 19 C -0.156 4.156 20 C 0.047 3.953 21 O -0.304 6.304 22 C -0.076 4.076 23 H 0.072 0.928 24 H 0.040 0.960 25 H 0.040 0.960 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.230 0.770 29 H 0.151 0.849 30 H 0.153 0.847 31 H 0.139 0.861 32 H 0.140 0.860 33 H 0.140 0.860 34 H 0.237 0.763 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.328 -20.308 -2.437 21.136 hybrid contribution -0.250 0.814 -0.262 0.891 sum 5.078 -19.494 -2.700 20.324 Atomic orbital electron populations 1.69946 1.06091 1.26961 1.50405 1.24989 0.94888 0.99387 0.94971 0.86572 0.79521 0.82631 0.78817 1.20081 1.21232 1.20109 1.21024 0.93227 0.90424 1.51363 0.92318 1.19318 0.94192 0.91171 0.97778 1.21710 0.96002 0.81512 1.00808 1.46334 1.10452 1.06676 1.72933 1.18498 0.87905 0.84593 0.77978 1.90887 1.13229 1.87352 1.49926 1.23205 1.00291 0.92892 1.05365 1.22293 0.92584 0.97623 0.93659 1.18713 0.93219 0.96850 0.96358 1.21150 0.93216 0.99029 0.99541 1.20778 0.95665 0.99671 0.97791 1.21411 0.99625 0.96253 0.98330 1.18266 0.91390 0.92636 0.93004 1.84933 1.86896 1.40968 1.17626 1.21372 0.95016 0.94620 0.96639 0.92808 0.95975 0.95990 0.92591 0.92520 0.76950 0.84923 0.84689 0.86054 0.85976 0.85975 0.76318 0.86138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.42 13.29 55.43 0.74 -25.69 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 8 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 9 C 0.01 0.32 5.09 -27.89 -0.14 0.18 16 10 C 0.12 2.68 5.61 -4.04 -0.02 2.65 16 11 N -0.72 -12.73 5.55 -61.70 -0.34 -13.07 16 12 C 0.52 8.98 6.79 -12.96 -0.09 8.89 16 13 O -0.53 -10.99 12.16 5.19 0.06 -10.93 16 14 C -0.20 -2.43 9.91 -37.50 -0.37 -2.80 16 15 C -0.04 -0.47 9.81 -37.15 -0.36 -0.83 16 16 C -0.05 -0.69 4.53 -105.08 -0.48 -1.16 16 17 C -0.11 -1.32 9.79 -39.10 -0.38 -1.70 16 18 C -0.12 -1.39 10.02 -39.67 -0.40 -1.79 16 19 C -0.14 -1.76 9.98 -39.32 -0.39 -2.15 16 20 C 0.09 1.34 6.70 -39.28 -0.26 1.08 16 21 O -0.50 -6.92 13.50 -19.43 -0.26 -7.19 16 22 C -0.06 -0.88 6.54 -38.95 -0.25 -1.13 16 23 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 24 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 27 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 28 H 0.40 6.06 8.45 -40.82 -0.35 5.71 16 29 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 30 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 31 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 32 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 33 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 34 H 0.38 3.12 9.06 45.56 0.41 3.53 16 35 H 0.12 1.94 7.04 -52.49 -0.37 1.57 16 LS Contribution 308.15 15.07 4.64 4.64 Total: -1.00 -34.50 308.15 -7.40 -41.89 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -3.65 Total: 5.90 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: -3.57 Total: -12.25 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: 0.39 Total: -38.76 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: -0.20 Total: -18.12 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -34.50 -7.40 -41.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493652021.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.180 kcal (2) G-P(sol) polarization free energy of solvation -34.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds