Wall clock time and date at job start Sun Mar 29 2020 23:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 119.99885 * 2 1 4 4 H 1.48509 * 109.47441 * 240.00165 * 3 2 1 5 5 H 1.48497 * 109.47264 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47005 * 120.00160 * 3 2 1 7 7 C 1.37879 * 119.99977 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99548 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00415 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47330 * 180.02562 * 9 7 2 11 11 N 1.46498 * 109.47033 * 180.02562 * 10 9 7 12 12 C 1.34779 * 120.00072 * 179.97438 * 11 10 9 13 13 O 1.21694 * 119.99957 * 359.97438 * 12 11 10 14 14 C 1.46426 * 119.99850 * 179.97438 * 12 11 10 15 15 C 1.34806 * 119.99761 * 173.21748 * 14 12 11 16 16 C 1.47216 * 120.00025 * 349.03564 * 15 14 12 17 17 C 1.39873 * 120.14356 * 136.38001 * 16 15 14 18 18 C 1.37896 * 119.93720 * 179.97438 * 17 16 15 19 19 C 1.38329 * 120.23048 * 359.97438 * 18 17 16 20 20 C 1.38858 * 120.29461 * 359.97438 * 19 18 17 21 21 O 1.35903 * 119.97254 * 180.02562 * 20 19 18 22 22 C 1.38430 * 120.05279 * 359.79331 * 20 19 18 23 23 H 0.96999 * 119.99682 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.46948 * 59.99905 * 9 7 2 25 25 H 1.09000 * 109.46749 * 300.00889 * 9 7 2 26 26 H 1.08999 * 109.47100 * 60.00045 * 10 9 7 27 27 H 1.09001 * 109.46855 * 300.00014 * 10 9 7 28 28 H 0.97004 * 119.99785 * 359.97438 * 11 10 9 29 29 H 1.08000 * 120.00640 * 353.21661 * 14 12 11 30 30 H 1.08001 * 120.00146 * 169.03031 * 15 14 12 31 31 H 1.08001 * 120.02979 * 359.95184 * 17 16 15 32 32 H 1.08005 * 119.88218 * 180.02562 * 18 17 16 33 33 H 1.08001 * 119.85072 * 180.02562 * 19 18 17 34 34 H 0.96701 * 114.00001 * 90.00481 * 21 20 19 35 35 H 1.08000 * 120.11509 * 180.23133 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5129 -4.9308 -0.0012 12 6 2.1868 -6.0980 -0.0018 13 8 3.4038 -6.0980 -0.0023 14 6 1.4547 -7.3661 -0.0018 15 6 2.1216 -8.5294 -0.1403 16 6 3.5410 -8.5222 -0.5309 17 6 4.4521 -9.3627 0.1170 18 6 5.7805 -9.3529 -0.2527 19 6 6.2161 -8.5145 -1.2631 20 6 5.3197 -7.6769 -1.9135 21 8 5.7546 -6.8563 -2.9057 22 6 3.9825 -7.6805 -1.5553 23 1 -0.4849 0.8401 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6247 -2.5570 0.8896 26 1 2.8720 -3.6043 0.8894 27 1 2.8720 -3.6043 -0.8905 28 1 0.5429 -4.9308 -0.0011 29 1 0.3804 -7.3695 0.1091 30 1 1.6146 -9.4667 0.0353 31 1 4.1155 -10.0186 0.9063 32 1 6.4832 -10.0026 0.2479 33 1 7.2578 -8.5121 -1.5480 34 1 5.7197 -7.2522 -3.7872 35 1 3.2838 -7.0322 -2.0630 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493652021.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:42:04 Heat of formation + Delta-G solvation = -62.858560 kcal Electronic energy + Delta-G solvation = -18515.561133 eV Core-core repulsion = 15478.066137 eV Total energy + Delta-G solvation = -3037.494996 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.15703 -40.06765 -37.76959 -36.58791 -34.83077 -34.53858 -31.85110 -30.83807 -30.23270 -27.05222 -24.91680 -23.39228 -23.09111 -22.33712 -20.50684 -19.32407 -18.56006 -17.70019 -17.30609 -16.87025 -16.50461 -16.36767 -16.25720 -15.80913 -15.20020 -14.87979 -14.55622 -14.36059 -14.19315 -13.58593 -13.29959 -13.20243 -12.94380 -12.79189 -12.55890 -12.47140 -12.25212 -11.69049 -11.52232 -11.42030 -10.95477 -10.71964 -10.62113 -10.00179 -9.40893 -9.11976 -8.26349 -6.37181 -0.23507 0.46027 0.93139 1.39556 1.42096 1.50258 2.31967 2.38321 2.51242 2.83045 3.08018 3.32735 3.79570 3.96871 4.05493 4.22962 4.36641 4.45558 4.47584 4.52950 4.67021 4.82018 4.91838 5.04138 5.16163 5.27325 5.30157 5.49306 5.52576 5.55074 5.55790 5.65673 5.76879 5.99847 6.14231 6.70746 6.75592 6.88887 7.32128 7.36603 8.85351 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.027476 B = 0.004005 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.837967 B = 6990.111148 C = 7683.731152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.965 3.035 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.551 4.551 8 H 0.055 0.945 9 C 0.024 3.976 10 C 0.145 3.855 11 N -0.715 5.715 12 C 0.518 3.482 13 O -0.573 6.573 14 C -0.212 4.212 15 C -0.018 4.018 16 C -0.071 4.071 17 C -0.112 4.112 18 C -0.119 4.119 19 C -0.148 4.148 20 C 0.068 3.932 21 O -0.517 6.517 22 C -0.084 4.084 23 H 0.267 0.733 24 H 0.008 0.992 25 H 0.009 0.991 26 H 0.041 0.959 27 H 0.039 0.961 28 H 0.410 0.590 29 H 0.170 0.830 30 H 0.185 0.815 31 H 0.155 0.845 32 H 0.155 0.845 33 H 0.137 0.863 34 H 0.403 0.597 35 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.649 -22.634 -2.111 23.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.789 3.211 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.589 4.589 8 H 0.073 0.927 9 C -0.013 4.013 10 C 0.020 3.980 11 N -0.365 5.365 12 C 0.308 3.692 13 O -0.455 6.455 14 C -0.232 4.232 15 C -0.037 4.037 16 C -0.071 4.071 17 C -0.130 4.130 18 C -0.137 4.137 19 C -0.167 4.167 20 C 0.024 3.976 21 O -0.329 6.329 22 C -0.102 4.102 23 H 0.076 0.924 24 H 0.027 0.973 25 H 0.028 0.972 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.246 0.754 29 H 0.188 0.812 30 H 0.202 0.798 31 H 0.172 0.828 32 H 0.173 0.827 33 H 0.155 0.845 34 H 0.260 0.740 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.429 -22.078 -1.661 22.796 hybrid contribution -0.223 1.259 -0.547 1.391 sum 5.206 -20.818 -2.209 21.573 Atomic orbital electron populations 1.70045 1.07494 1.28137 1.50800 1.25857 0.95816 1.03036 0.94262 0.85509 0.78360 0.78151 0.79101 1.19440 1.20230 1.19381 1.21431 0.93446 0.92113 1.51912 0.92687 1.19117 0.94155 0.91718 0.96324 1.21116 0.94945 0.82695 0.99195 1.46149 1.10988 1.05650 1.73697 1.19346 0.87743 0.85682 0.76398 1.90877 1.15160 1.87991 1.51467 1.23201 1.01789 0.90366 1.07868 1.22799 0.91342 0.99080 0.90467 1.19107 0.95064 0.96769 0.96140 1.21578 0.93086 0.98665 0.99677 1.21231 0.96405 0.99168 0.96898 1.21674 1.00131 0.96227 0.98657 1.18580 0.91843 0.93418 0.93725 1.84856 1.86930 1.42090 1.19059 1.21364 0.95054 0.95628 0.98202 0.92433 0.97328 0.97228 0.94079 0.94300 0.75418 0.81242 0.79775 0.82753 0.82746 0.84473 0.73974 0.88488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.08 13.29 21.45 0.28 -54.80 16 2 C 0.01 0.53 5.46 84.66 0.46 0.99 16 3 Si 0.96 44.59 29.54 68.60 2.03 46.62 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 6 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.55 -31.86 9.11 25.60 0.23 -31.62 16 8 H 0.05 3.14 7.74 -2.91 -0.02 3.12 16 9 C 0.02 1.27 5.09 29.85 0.15 1.42 16 10 C 0.14 6.60 5.61 86.38 0.48 7.09 16 11 N -0.71 -25.88 5.55 -467.35 -2.59 -28.47 16 12 C 0.52 17.82 6.79 86.37 0.59 18.41 16 13 O -0.57 -24.15 12.16 -4.33 -0.05 -24.20 16 14 C -0.21 -4.79 9.91 23.62 0.23 -4.55 16 15 C -0.02 -0.34 9.81 23.84 0.23 -0.10 16 16 C -0.07 -1.78 4.53 -20.16 -0.09 -1.87 16 17 C -0.11 -2.33 9.79 22.58 0.22 -2.11 16 18 C -0.12 -2.45 10.02 22.21 0.22 -2.23 16 19 C -0.15 -3.66 9.98 22.44 0.22 -3.44 16 20 C 0.07 2.05 6.70 22.46 0.15 2.20 16 21 O -0.52 -15.11 13.50 -92.45 -1.25 -16.36 16 22 C -0.08 -2.59 6.54 22.68 0.15 -2.44 16 23 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 24 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 25 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 26 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.41 12.52 8.45 -92.71 -0.78 11.74 16 29 H 0.17 2.51 8.06 -2.91 -0.02 2.49 16 30 H 0.19 1.70 8.06 -2.91 -0.02 1.68 16 31 H 0.15 2.12 8.06 -2.91 -0.02 2.09 16 32 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 33 H 0.14 2.82 8.06 -2.91 -0.02 2.80 16 34 H 0.40 7.00 9.06 -74.06 -0.67 6.33 16 35 H 0.10 3.33 7.04 -2.91 -0.02 3.31 16 Total: -1.00 -76.69 308.15 1.34 -75.35 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: -0.34 Total: 20.12 kcal Atomic # 6 Polarization: -21.52 SS G_CDS: 3.26 Total: -18.26 kcal Atomic # 7 Polarization: -80.96 SS G_CDS: -2.31 Total: -83.27 kcal Atomic # 8 Polarization: -39.26 SS G_CDS: -1.30 Total: -40.56 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -76.69 1.34 -75.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493652021.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.495 kcal (2) G-P(sol) polarization free energy of solvation -76.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds